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PA0094-like family domain assignments
in
all bacterial and archaeal genomes

Assignment details

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16 selected genomes have 18 significant domains in 18 proteins.


Pseudomonas protegens Pf-5 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|70733382|ref|YP_263157.1|   1.15e-45   0.000000558   1-141   1tu1 A:  
 
Weak hits:
gi|70733378|ref|YP_263153.1|   2.51e-35   0.0021   1-140   1tu1 A:  

Pseudomonas aeruginosa UCBPP-PA14 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|116053815|ref|YP_788252.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas protegens CHA0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|501683464|ref|YP_008003290.1|   1.05e-45   0.00000055   1-141   1tu1 A:  
 
Weak hits:
gi|501683460|ref|YP_008003286.1|   2.51e-35   0.0021   1-140   1tu1 A:  

Pseudomonas aeruginosa SCV20265 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|568306835|ref|YP_008979104.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa MTB-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|564949989|ref|YP_008882559.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa LES431 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|568151279|ref|YP_008940224.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa RP73 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|514407721|ref|YP_008130563.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa B136-33 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|478476297|ref|YP_007706948.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa PA1R has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|558666448|ref|YP_008803158.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  
gi|558669512|ref|YP_008806222.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa PA1 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|558672799|ref|YP_008809507.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  
gi|558675863|ref|YP_008812571.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa DK2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|392981508|ref|YP_006480095.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa NCGM2.S1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386063072|ref|YP_005978376.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa M18 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386056165|ref|YP_005972687.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa LESB58 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|218888839|ref|YP_002437703.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

Pseudomonas aeruginosa PA7 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|152987036|ref|YP_001345564.1|   1.67e-47   0.0000000726   1-141   1tu1 A:  

Pseudomonas aeruginosa PAO1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|15595292|ref|NP_248784.1|   1.2e-47   0.0000000692   1-141   1tu1 A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2614 2614
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2515 2515
No Yes STRING v9.0.5 (STRING)   5 5
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   59 59
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6
No Yes TargetDB (Targets)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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