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  Home > Genomes > Coronavirus S2 glycoprotein domains in all bacterial genomes


Coronavirus S2 glycoprotein superfamily domain assignments
in
all bacterial genomes

Network of domain occurrence in all genomes

Assignment details

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23 selected genomes have 23 significant domains in 23 proteins.


Nocardia farcinica IFM 10152 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|54027601|ref|YP_121843.1|   0.0000439   240-340   Coronavirus S2 glycoprotein  

Desulfotalea psychrophila LSv54 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|51244467|ref|YP_064351.1|   0.0000408   33-104   Coronavirus S2 glycoprotein  

Shewanella piezotolerans WP3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|212633180|ref|YP_002309705.1|   0.0000267   33-104   Coronavirus S2 glycoprotein  

Shewanella loihica PV-4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|127514475|ref|YP_001095672.1|   0.0000403   33-104   Coronavirus S2 glycoprotein  

Shewanella halifaxensis HAW-EB4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|167622299|ref|YP_001672593.1|   0.00000994   33-104   Coronavirus S2 glycoprotein  
 
Weak hits:
gi|167625591|ref|YP_001675885.1|   0.0188   33-103   Coronavirus S2 glycoprotein  

Shewanella sediminis HAW-EB3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|157373441|ref|YP_001472041.1|   0.0000732   34-104   Coronavirus S2 glycoprotein  
 
Weak hits:
gi|157377081|ref|YP_001475681.1|   0.0827   27-75   Coronavirus S2 glycoprotein  

Shewanella pealeana ATCC 700345 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|157963722|ref|YP_001503756.1|   0.0000173   33-104   Coronavirus S2 glycoprotein  

Shewanella oneidensis MR-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|414562276|ref|NP_719926.2|   0.000023   34-106   Coronavirus S2 glycoprotein  

Shewanella baltica OS185 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|152998864|ref|YP_001364545.1|   0.0000837   33-104   Coronavirus S2 glycoprotein  

Shewanella woodyi ATCC 51908 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|170728939|ref|YP_001762965.1|   0.000022   33-104   Coronavirus S2 glycoprotein  

Shewanella sp. MR-4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|113968658|ref|YP_732451.1|   0.0000764   34-105   Coronavirus S2 glycoprotein  

Shewanella amazonensis SB2B has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|119776538|ref|YP_929278.1|   0.00000105   33-104   Coronavirus S2 glycoprotein  

Shewanella violacea DSS12 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|294142886|ref|YP_003558864.1|   0.0000068   33-104   Coronavirus S2 glycoprotein  

Glaciecola nitratireducens FR1064 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|348028002|ref|YP_004870688.1|   0.000068   39-110   Coronavirus S2 glycoprotein  

Nitrosococcus watsonii C-113 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|300114300|ref|YP_003760875.1|   0.0000523   39-106   Coronavirus S2 glycoprotein  

Nitrosococcus oceani ATCC 19707 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|77164906|ref|YP_343431.1|   0.0000837   40-105   Coronavirus S2 glycoprotein  

Bacillus thuringiensis MC28 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|407702766|ref|YP_006815915.1|   0.000045   15-90   Coronavirus S2 glycoprotein  
 
Weak hits:
gi|407702511|ref|YP_006815661.1|   0.0638   10-55   Coronavirus S2 glycoprotein  
gi|407703092|ref|YP_006816240.1|   0.0596   9-75   Coronavirus S2 glycoprotein  
gi|407703778|ref|YP_006827363.1|   0.00481   36-97   Coronavirus S2 glycoprotein  
gi|407704733|ref|YP_006828318.1|   0.00237   3-48   Coronavirus S2 glycoprotein  

Desulfovibrio desulfuricans ND132 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376296883|ref|YP_005168113.1|   0.00000785   38-107   Coronavirus S2 glycoprotein  

Shewanella baltica BA175 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386326347|ref|YP_006022464.1|   0.0000837   33-104   Coronavirus S2 glycoprotein  

Shewanella baltica OS117 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386339341|ref|YP_006035707.1|   0.0000837   33-104   Coronavirus S2 glycoprotein  

Shewanella baltica OS223 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|217971526|ref|YP_002356277.1|   0.0000837   33-104   Coronavirus S2 glycoprotein  

Shewanella baltica OS155 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126172566|ref|YP_001048715.1|   0.0000837   33-104   Coronavirus S2 glycoprotein  

Glaciecola psychrophila 170 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|476416664|ref|YP_007546582.1|   0.000000942   32-105   Coronavirus S2 glycoprotein  

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Add assignments from groups of genomes

View all assignments containing a Coronavirus S2 glycoprotein domain in each group of genomes.

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Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   9226 9226
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Nitrosococcus watsonii C-113   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes NCBI 2017_08 genome   250 196
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   15 15
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   6908 3924
No Yes Global Ocean Sampling Expedition (GOS)   6 6
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   88 45
No Yes PDB chains (SCOP 1.75) (PDB)   15 14
No Yes Protein Data Bank (all PDB sequenc)   324 187
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   67 64
No Yes UniProt viral sequences (Viral)   1504 873

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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