SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > EspA chaperone CesA domains in all bacterial and archaeal genomes


EspA chaperone CesA family domain assignments
in
all bacterial and archaeal genomes

Assignment details

(show help)

12 selected genomes have 12 significant domains in 12 proteins.


Citrobacter rodentium ICC168 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|283786655|ref|YP_003366520.1|   1.54e-40   0.0000127   3-85   1xou B:  

Escherichia coli Xuzhou21 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|387884884|ref|YP_006315186.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O103:H2 str. 12009 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|260845715|ref|YP_003223493.1|   6.28e-42   0.0000106   2-82   1xou B:  

Escherichia coli O55:H7 str. RM12579 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|387509110|ref|YP_006161366.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O55:H7 str. CB9615 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|291285074|ref|YP_003501892.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O26:H11 str. 11368 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|260858244|ref|YP_003232135.1|   6.28e-42   0.0000106   2-82   1xou B:  

Escherichia coli O111:H- str. 11128 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|260869704|ref|YP_003236106.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O127:H6 str. E2348/69 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|215488997|ref|YP_002331428.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O157:H7 str. TW14359 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|254795661|ref|YP_003080498.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O157:H7 str. EC4115 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|209400330|ref|YP_002273182.1|   1.65e-44   0.00000771   2-82   1xou B:  

Escherichia coli O157:H7 str. Sakai has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|15833840|ref|NP_312613.1|   1.61e-45   0.00000682   3-85   1xou B:  

Escherichia coli O157:H7 str. EDL933 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|15804247|ref|NP_290286.1|   1.61e-45   0.00000682   3-85   1xou B:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a EspA chaperone CesA domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   1792 1792
No Yes Citrobacter rodentium ICC168   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes NCBI 2017_08 genome   1713 1713
No Yes STRING v9.0.5 (STRING)   8 8
No Yes Uniprot 2018_03 genome   43 43
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.