Select to display Genome Domains Proteins No ALL 195046 195046 Yes Homo sapiens 76_38 Human 202 172 Yes Pan troglodytes 76_2.1.4 Chimpanzee 84 67 Yes Gorilla gorilla 76_3.1 Western gorilla 103 86 Yes Pongo abelii 76_2 Sumatran orangutan 81 71 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 73 65 Yes Papio anubis 76 Olive baboon 79 66 Yes Macaca mulatta 76_1 Rhesus monkey 130 112 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 150 128 Yes Otolemur garnettii 76_3 Small-eared galago 82 68 Yes Microcebus murinus 76_1 Gray mouse lemur 65 53 Yes Rattus norvegicus 76_5.0 Norway rat 84 72 Yes Mus musculus 76_38 House mouse 132 114 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 65 57 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 76 64 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 65 57 Yes Cavia porcellus 76_3 Domestic guinea pig 77 66 Yes Oryctolagus cuniculus 76_2 Rabbit 84 71 Yes Ochotona princeps 76 American pika 74 58 Yes Tupaia belangeri 76 Northern tree shrew 63 53 Yes Sus scrofa 76_10.2 Pig 78 73 Yes Bos taurus 76_3.1 Cattle 76 64 Yes Ovis aries 76_3.1 Sheep 78 64 Yes Vicugna pacos 76_1 Alpaca 58 46 Yes Tursiops truncatus 76_1 Bottlenose dolphin 71 61 Yes Mustela putorius furo 76_1.0 Domestic ferret 79 67 Yes Ailuropoda melanoleuca 76_1 Giant panda 78 70 Yes Canis familiaris 76_3.1 Dog 84 70 Yes Felis catus 76_6.2 Domestic cat 70 63 Yes Equus caballus 76_2 Horse 73 66 Yes Myotis lucifugus 76_2.0 Little brown bat 78 67 Yes Pteropus vampyrus 76_1 Large flying fox 71 62 Yes Sorex araneus 76_1 European shrew 59 51 Yes Erinaceus europaeus 76 Western European hedgehog 69 56 Yes Procavia capensis 76_1 Cape rock hyrax 66 54 Yes Loxodonta africana 76_3 African savanna elephant 89 79 Yes Echinops telfairi 76 Small Madagascar hedgehog 71 57 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 79 69 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 48 39 Yes Macropus eugenii 76_1.0 Tammar wallaby 73 60 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 77 70 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 84 72 Yes Ornithorhynchus anatinus 76_5 Platypus 78 70 Yes Saccoglossus kowalevskii v3.0 125 103 Yes Petromyzon marinus 76_7.0 Sea lamprey 50 41 Yes Meleagris gallopavo 76_2 Turkey 72 63 Yes Gallus gallus 76_4 Chicken 66 59 Yes Anas platyrhynchos 76_1.0 Mallard 72 63 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 72 63 Yes Ficedula albicollis 76_1.0 Collared flycatcher 69 59 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 82 69 Yes Anolis carolinensis 76_2.0 Green anole 84 75 Yes Xenopus laevis African clawed frog 73 68 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 86 75 Yes Latimeria chalumnae 76_1 Coelacanth 95 86 Yes Lepisosteus oculatus 76 Spotted gar 103 90 Yes Gadus morhua 76_1 Atlantic cod 94 80 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 107 91 Yes Takifugu rubripes 76_4 Torafugu 229 210 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 120 108 Yes Oryzias latipes 76_1 Japanese medaka 121 106 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 87 80 Yes Poecilia formosa 76 Amazon molly 90 80 Yes Oreochromis niloticus 76_1.0 Nile tilapia 113 95 Yes Astyanax mexicanus 76 Mexican tetra 97 85 Yes Danio rerio 76_9 Zebrafish 136 122 Yes Oikopleura dioica 161 151 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 85 70 Yes Ciona intestinalis 76 Vase tunicate 69 63 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 58 55 Yes Adineta vaga 228 182 Yes Octopus bimaculoides 280 63 49 Yes Crassostrea gigas 22 Pacific oyster 76 68 Yes Lottia gigantea Owl limpet 58 52 Yes Helobdella robusta 64 59 Yes Capitella sp. I 267 248 Yes Danaus plexippus OGS1.0 Monarch butterfly 25 18 Yes Heliconius melpomene Postman butterfly 26 19 Yes Bombyx mori Domestic silkworm 24 21 Yes Nasonia vitripennis Jewel wasp 25 20 Yes Apis mellifera 38.2d (Not maintained) Honey bee 42 36 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 25 16 Yes Linepithema humile v1.1 Argentine ant 21 16 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 28 24 Yes Solenopsis invicta v.2.2.3 Red fire ant 23 19 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 18 13 Yes Atta cephalotes v1.1 20 17 Yes Camponotus floridanus v3.3 Florida carpenter ant 20 16 Yes Lucilia cuprina Australian sheep blowfly 15 10 Yes Drosophila grimshawi 1.3 30 26 Yes Drosophila willistoni 1.3 20 15 Yes Drosophila pseudoobscura 2.13 23 17 Yes Drosophila persimilis 1.3 23 17 Yes Drosophila suzukii 29 19 Yes Drosophila yakuba 1.3 21 15 Yes Drosophila simulans 1.3 18 14 Yes Drosophila sechellia 1.3 27 22 Yes Drosophila melanogaster 76_5 Fruit fly 50 39 Yes Drosophila erecta 1.3 23 17 Yes Drosophila ananassae 1.3 21 16 Yes Drosophila virilis 1.2 22 16 Yes Drosophila mojavensis 1.3 23 17 Yes Megaselia scalaris 22 7 6 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 28 20 Yes Culex pipiens quinquefasciatus Southern house mosquito 27 18 Yes Anopheles darlingi 22 American malaria mosquito 11 10 Yes Anopheles gambiae 49_3j African malaria mosquito 20 14 Yes Tribolium castaneum 3.0 Red flour beetle 26 21 Yes Pediculus humanus corporis Human body louse 22 18 Yes Acyrthosiphon pisum Pea aphid 111 90 Yes Rhodnius prolixus 22 28 25 Yes Daphnia pulex Common water flea 35 31 Yes Strigamia maritima 22 63 54 Yes Sarcoptes scabiei 17 13 Yes Tetranychus urticae Two-spotted spider mite 22 21 Yes Ixodes scapularis Black-legged tick 44 37 Yes Pristionchus pacificus 26 26 Yes Meloidogyne incognita Southern root-knot nematode 16 15 Yes Meloidogyne hapla 7 6 Yes Onchocerca volvulus 22 17 13 Yes Brugia malayi WS250 Agent of lymphatic filariasis 32 25 Yes Caenorhabditis japonica 15 12 Yes Caenorhabditis brenneri 21 19 Yes Caenorhabditis remanei 18 16 Yes Caenorhabditis elegans 76_235 Roundworm 32 25 Yes Caenorhabditis briggsae 2 14 12 Yes Trichinella spiralis 22 14 12 Yes Hymenolepis microstoma 39 35 Yes Echinococcus multilocularis 21 20 Yes Echinococcus granulosus 23 19 Yes Taenia solium Pork tapeworm 26 22 Yes Schistosoma mansoni 23 19 Yes Mnemiopsis leidyi Sea walnut 46 40 Yes Thelohanellus kitauei 145 132 Yes Acropora digitifera v1.0 94 82 Yes Nematostella vectensis 1.0 Starlet sea anemone 88 72 Yes Hydra vulgaris 30 25 Yes Amphimedon queenslandica 418 380 Yes Trichoplax adhaerens 30 24 Yes Proterospongia sp. ATCC 50818 45 32 Yes Monosiga brevicollis 47 36 Yes Sphaeroforma arctica JP610 13 11 Yes Capsaspora owczarzaki ATCC 30864 15 13 Yes Conidiobolus coronatus NRRL28638 v1.0 79 76 Yes Mortierella verticillata NRRL 6337 70 65 Yes Phycomyces blakesleeanus 45 41 Yes Rhizopus oryzae RA 99-880 34 33 Yes Mucor circinelloides 47 40 Yes Rhizomucor miehei CAU432 31 30 Yes Malassezia globosa CBS 7966 6 6 Yes Sporisorium reilianum 22 9 6 Yes Ustilago maydis 6 5 Yes Mixia osmundae IAM 14324 v1.0 7 6 Yes Cronartium quercuum f. sp. fusiforme G11 v1.0 10 9 Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3 16 13 Yes Melampsora laricis-populina 10 10 Yes Rhodotorula graminis WP1 v1.0 9 8 Yes Sporobolomyces roseus IAM 13481 6 6 Yes Microbotryum violaceum 22 8 7 Yes Wallemia sebi v1.0 5 5 Yes Sphaerobolus stellatus v1.0 17 17 Yes Piloderma croceum F 1598 v1.0 10 10 Yes Serpula lacrymans var. lacrymans S7.9 5 4 Yes Coniophora puteana 7 6 Yes Hydnomerulius pinastri v2.0 8 6 Yes Paxillus rubicundulus Ve08.2h10 v1.0 9 7 Yes Pisolithus microcarpus 441 v1.0 9 8 Yes Pisolithus tinctorius Marx 270 v1.0 9 8 Yes Scleroderma citrinum Foug A v1.0 9 9 Yes Coprinopsis cinerea okayama7 130 v3 9 7 Yes Pleurotus ostreatus Oyster mushroom 12 9 Yes Amanita thiersii Skay4041 v1.0 7 6 Yes Amanita muscaria Koide v1.0 Fly agaric 9 6 Yes Galerina marginata v1.0 20 18 Yes Hebeloma cylindrosporum h7 v2.0 10 9 Yes Laccaria bicolor S238N-H82 13 13 Yes Agaricus bisporus var. bisporus 12 8 Yes Schizophyllum commune 7 6 Yes Stereum hirsutum FP-91666 SS1 v1.0 11 9 Yes Heterobasidion annosum 5 4 Yes Gloeophyllum trabeum v1.0 9 9 Yes Punctularia strigosozonata v1.0 7 7 Yes Sebacina vermifera MAFF 305830 v1.0 7 6 Yes Fomitiporia mediterranea v1.0 7 6 Yes Tulasnella calospora AL13/4D v1.0 22 21 Yes Postia placenta 12 12 Yes Wolfiporia cocos MD-104 SS10 v1.0 8 8 Yes Fomitopsis pinicola v1.0 8 7 Yes Fomitopsis pinicola FP-58527 SS1 v3.0 8 7 Yes Phanerochaete chrysosporium RP-78 2.1 9 8 Yes Dichomitus squalens 11 10 Yes Trametes versicolor v1.0 10 9 Yes Tremella mesenterica Witches' butter 10 8 Yes Daldinia eschscholzii EC12 v1.0 8 8 Yes Apiospora montagnei NRRL 25634 v1.0 11 10 Yes Magnaporthe poae ATCC 64411 22 3 3 Yes Magnaporthe grisea 70-15 14 14 Yes Podospora anserina 8 7 Yes Sporotrichum thermophile ATCC 42464 9 9 Yes Thielavia terrestris NRRL 8126 11 10 Yes Chaetomium globosum CBS 148.51 9 9 Yes Neurospora tetrasperma 12 12 Yes Neurospora discreta FGSC 8579 11 11 Yes Neurospora crassa OR74A 12 12 Yes Cryphonectria parasitica Chestnut blight fungus 9 9 Yes Verticillium albo-atrum VaMs.102 14 14 Yes Verticillium dahliae VdLs.17 14 13 Yes Acremonium alcalophilum v 1.0 7 7 Yes Glomerella graminicola 22 13 11 Yes Fusarium graminearum 13 12 Yes Nectria haematococca mpVI 10 10 Yes Fusarium oxysporum f. sp. lycopersici 4286 16 15 Yes Fusarium verticillioides 7600 10 10 Yes Trichoderma asperellum CBS 433.97 v1.0 10 8 Yes Trichoderma atroviride 6 6 Yes Trichoderma citrinoviride v1.0 9 8 Yes Trichoderma reesei 1.2 8 8 Yes Trichoderma virens Gv29-8 8 7 Yes Trichoderma longibrachiatum ATCC 18648 v1.0 9 8 Yes Trichoderma harzianum CBS 226.95 v1.0 9 8 Yes Amorphotheca resinae v1.0 Creosote fungus 9 8 Yes Botrytis cinerea B05.10 14 13 Yes Sclerotinia sclerotiorum 10 10 Yes Blumeria graminis 22 8 7 Yes Didymella exigua CBS 183.55 v1.0 10 10 Yes Leptosphaeria maculans 22 9 9 Yes Setosphaeria turcica v1.0 10 10 Yes Cochliobolus miyabeanus ATCC 44560 v1.0 8 8 Yes Cochliobolus victoriae FI3 v1.0 8 8 Yes Cochliobolus carbonum 26-R-13 v1.0 8 8 Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 10 10 Yes Alternaria brassicicola 11 10 Yes Cochliobolus lunatus m118 v2.0 9 9 Yes Pyrenophora teres f. teres 22 13 12 Yes Pyrenophora tritici-repentis 8 7 Yes Stagonospora nodorum 10 9 Yes Mycosphaerella graminicola IPO323 10 9 Yes Zasmidium cellare ATCC 36951 v1.0 12 12 Yes Dothistroma septosporum 8 8 Yes Septoria musiva v1.0 8 8 Yes Mycosphaerella fijiensis CIRAD86 7 7 Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 10 9 Yes Paracoccidioides brasiliensis Pb18 6 6 Yes Coccidioides posadasii RMSCC 3488 5 5 Yes Coccidioides immitis RS 4 4 Yes Ajellomyces dermatitidis SLH14081 8 7 Yes Histoplasma capsulatum class NAmI strain WU24 7 7 Yes Microsporum canis CBS 113480 5 5 Yes Trichophyton equinum CBS 127.97 5 5 Yes Trichophyton verrucosum HKI 0517 5 5 Yes Arthroderma benhamiae CBS 112371 5 5 Yes Trichophyton tonsurans CBS 112818 4 4 Yes Trichophyton rubrum CBS 118892 5 5 Yes Uncinocarpus reesii 1704 6 6 Yes Aspergillus zonatus v1.0 6 6 Yes Penicillium chrysogenum Wisconsin 54-1255 6 6 Yes Penicillium chrysogenum v1.0 5 5 Yes Aspergillus acidus v1.0 9 9 Yes Aspergillus fumigatus Af293 7 6 Yes Aspergillus brasiliensis v1.0 7 7 Yes Aspergillus nidulans FGSC A4 7 7 Yes Aspergillus sydowii v1.0 9 9 Yes Aspergillus versicolor v1.0 9 8 Yes Aspergillus glaucus 6 6 Yes Aspergillus carbonarius ITEM 5010 6 5 Yes Neosartorya fischeri NRRL 181 7 6 Yes Aspergillus terreus NIH2624 10 8 Yes Aspergillus tubingensis v1.0 8 7 Yes Aspergillus wentii v1.0 9 8 Yes Aspergillus oryzae RIB40 8 8 Yes Aspergillus niger 22 7 7 Yes Aspergillus niger ATCC 1015 6 5 Yes Aspergillus flavus NRRL3357 7 7 Yes Aspergillus clavatus NRRL 1 5 5 Yes Penicillium marneffei ATCC 18224 8 8 Yes Tuber melanosporum Mel28 22 5 5 Yes Tuber melanosporum Vittad Perigord truffle 15 15 Yes Hansenula polymorpha v2.0 4 4 Yes Dekkera bruxellensis CBS 2499 v2.0 4 4 Yes Pichia membranifaciens v1.0 7 6 Yes Candida tanzawaensis NRRL Y-17324 v1.0 5 5 Yes Candida dubliniensis CD36 7 7 Yes Candida tropicalis MYA-3404 7 7 Yes Candida parapsilosis 4 4 Yes Candida albicans SC5314 6 6 Yes Lodderomyces elongisporus NRRL YB-4239 4 4 Yes Babjeviella inositovora NRRL Y-12698 v1.0 5 5 Yes Pichia stipitis CBS 6054 3 3 Yes Candida guilliermondii ATCC 6260 4 4 Yes Hyphopichia burtonii NRRL Y-1933 v1.0 5 5 Yes Debaromyces hansenii 7 7 Yes Wickerhamomyces anomalus 6 6 Yes Pichia pastoris GS115 4 4 Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1 4 4 Yes Yarrowia lipolytica CLIB122 7 7 Yes Candida lusitaniae ATCC 42720 4 4 Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0 3 3 Yes Vanderwaltozyma polyspora DSM 70294 7 5 Yes Candida glabrata CBS138 6 6 Yes Kluyveromyces thermotolerans CBS 6340 3 3 Yes Lachancea kluyveri 4 4 Yes Kluyveromyces waltii 3 3 Yes Ashbya gossypii ATCC 10895 5 4 Yes Zygosaccharomyces rouxii 3 3 Yes Saccharomyces mikatae MIT 7 6 Yes Saccharomyces paradoxus MIT 7 6 Yes Saccharomyces cerevisiae 76 Baker's yeast 8 6 Yes Saccharomyces bayanus MIT 6 6 Yes Kluyveromyces lactis 5 4 Yes Schizosaccharomyces cryophilus OY26 22 3 3 Yes Schizosaccharomyces octosporus yFS286 3 3 Yes Schizosaccharomyces japonicus yFS275 4 3 Yes Schizosaccharomyces pombe Fission yeast 3 3 Yes Catenaria anguillulae PL171 v1.0 26 24 Yes Allomyces macrogynus ATCC 38327 53 51 Yes Spizellomyces punctatus DAOM BR117 21 17 Yes Dictyostelium discoideum 38 27 Yes Dictyostelium purpureum 29 25 Yes Entamoeba dispar 1.2 2 2 Yes Entamoeba invadens 1.2 2 2 Yes Entamoeba histolytica 1 2 2 Yes Selaginella moellendorffii 196 188 Yes Pinus taeda Loblolly pine 156 144 Yes Picea abies Norway spruce 110 106 Yes Eucalyptus grandis v201 Rose gum 79 71 Yes Theobroma cacao B97-61/B2 v1 Cacao 60 57 Yes Gossypium raimondii v221 162 157 Yes Citrus clementina v165 68 64 Yes Citrus sinensis v154 Sweet orange 95 90 Yes Thellungiella halophila v173 199 192 Yes Brassica rapa Chiifu-401 1.2 Field mustard 240 235 Yes Capsella rubella v183 194 187 Yes Arabidopsis lyrata Lyrate rockcress 218 208 Yes Arabidopsis thaliana 10 Thale cress 171 163 Yes Carica papaya Papaya 42 39 Yes Medicago truncatula Barrel medic 91 86 Yes Phaseolus vulgaris v186 French bean 67 61 Yes Glycine max v109 Soybean 148 137 Yes Cucumis sativus v122 Cucumber 70 65 Yes Fragaria vesca Wild strawberry 100 97 Yes Malus domestica v196 Apple 119 115 Yes Prunus persica v139 Peach 54 51 Yes Linum usitatissimum v200 Flax 78 70 Yes Manihot esculenta v147 Cassava 71 69 Yes Populus trichocarpa v156 Black cottonwood 84 79 Yes Vitis vinifera Wine grape 48 46 Yes Mimulus guttatus v140 Spotted monkey flower 52 50 Yes Solanum lycopersicum v.2.3 Tomato 58 54 Yes Solanum tuberosum Potato 88 83 Yes Actinidia chinensis Hongyang 80 77 Yes Aquilegia coerulea v195 109 95 Yes Triticum urartu 22 45 43 Yes Triticum aestivum 22 Bread wheat 157 148 Yes Aegilops tauschii 22 51 49 Yes Brachypodium distachyon Stiff brome 59 53 Yes Oryza barthii 22 African wild rice 56 51 Yes Oryza meridionalis 22 77 69 Yes Oryza glumaepatula 22 70 65 Yes Oryza glaberrima African rice 55 51 Yes Oryza punctata 22 86 75 Yes Oryza nivara 22 89 82 Yes Oryza brachyantha 22 Malo sina 44 40 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 103 94 Yes Oryza sativa v193 Rice 103 94 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 73 67 Yes Panicum virgatum v202 Switchgrass 123 115 Yes Setaria italica v164 Foxtail millet 64 61 Yes Zea mays subsp. mays Maize 133 118 Yes Zea mays v181 Maize 137 121 Yes Sorghum bicolor Sorghum 58 54 Yes Musa balbisiana Balbis banana 89 83 Yes Musa acuminata 22 Wild Malaysian banana 79 75 Yes Amborella trichopoda 22 57 55 Yes Physcomitrella patens 129 125 Yes Coccomyxa subellipsoidea sp. C-169 v2 22 17 Yes Asterochloris sp. Cgr/DA1pho v1.0 13 10 Yes Chlorella variabilis sp. NC64A 18 14 Yes Chlorella vulgaris 23 19 Yes Volvox carteri f. nagariensis 24 20 Yes Volvox carteri v199 26 22 Yes Chlamydomonas reinhardtii 4.0 27 23 Yes Ostreococcus sp. RCC809 14 11 Yes Ostreococcus lucimarinus CCE9901 15 12 Yes Ostreococcus tauri 13 11 Yes Bathycoccus prasinos 10 7 Yes Micromonas sp. RCC299 17 15 Yes Micromonas pusilla CCMP1545 v3.0 21 15 Yes Cyanidioschyzon merolae strain 10D 22 23 20 Yes Cyanidioschyzon merolae 22 20 Yes Porphyridium purpureum 02_2012 7 5 Yes Thecamonas trahens ATCC 50062 35 28 Yes Bigelowiella natans CCMP2755 22 60 52 Yes Giardia lamblia 2.3 12 11 Yes Cyanophora paradoxa 104 94 Yes Leishmania mexicana 2.4 18 15 Yes Leishmania major strain Friedlin 17 15 Yes Leishmania infantum JPCM5 2.4 17 15 Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4 17 13 Yes Trypanosoma vivax 17 13 Yes Trypanosoma cruzi strain CL Brener 15 13 Yes Trypanosoma congolense 2.4 21 18 Yes Trypanosoma brucei gambiense v4.1 21 17 Yes Trypanosoma brucei TREU927 v4.1 20 17 Yes Ectocarpus siliculosus 31 26 Yes Aureococcus anophagefferens 25 22 Yes Albugo laibachii 22 34 29 Yes Pythium iwayamai DAOM BR242034 22 23 20 Yes Pythium arrhenomanes ATCC 12531 22 22 21 Yes Pythium ultimum v1.7-2 27 21 Yes Pythium aphanidermatum DAOM BR444 22 21 18 Yes Pythium irregulare DAOM BR486 22 28 20 Yes Pythium vexans DAOM BR484 22 25 21 Yes Phytophthora ramorum 1.1 Sudden oak death agent 18 17 Yes Phytophthora sojae 1.1 23 17 Yes Phytophthora infestans T30-4 32 27 Yes Phytophthora capsici 26 20 Yes Hyaloperonospora arabidopsidis 22 11 8 Yes Phaeodactylum tricornutum CCAP 1055/1 9 7 Yes Fragilariopsis cylindrus 24 19 Yes Thalassiosira pseudonana CCMP1335 20 14 Yes Perkinsus marinus ATCC 50983 37 27 Yes Paramecium tetraurelia 140 118 Yes Tetrahymena thermophila SB210 1 74 63 Yes Ichthyophthirius multifiliis strain G5 41 39 Yes Cryptosporidium hominis 5 4 Yes Cryptosporidium muris 9 6 Yes Cryptosporidium parvum Iowa II 7 5 Yes Neospora caninum 14 12 Yes Toxoplasma gondii VEG 13 9 Yes Toxoplasma gondii ME49 15 11 Yes Toxoplasma gondii GT1 16 12 Yes Babesia bovis T2Bo 14 12 Yes Theileria parva 9 8 Yes Theileria annulata 10 7 Yes Plasmodium falciparum 3D7 10 9 Yes Plasmodium vivax SaI-1 7.0 15 12 Yes Plasmodium knowlesi strain H 13 10 Yes Plasmodium yoelii ssp. yoelii 1 15 12 Yes Plasmodium chabaudi 12 10 Yes Plasmodium berghei ANKA 11 9 Yes Symbiodinium minutum clade B1 v1.2 133 105 Yes Naegleria gruberi 72 66 Yes Trichomonas vaginalis 43 43 Yes Guillardia theta CCMP2712 v1.0 89 63 Yes Emiliania huxleyi CCMP1516 61 55 No Thermobaculum terrenum ATCC BAA-798 1 1 No Gloeocapsa sp. PCC 7428 1 1 No Gloeobacter violaceus PCC 7421 4 4 No Conexibacter woesei DSM 14684 2 1 No Eggerthella sp. YY7918 1 1 No Eggerthella lenta DSM 2243 1 1 No Acidothermus cellulolyticus 11B 2 1 No Kineococcus radiotolerans SRS30216 1 1 No Catenulispora acidiphila DSM 44928 1 1 No Stackebrandtia nassauensis DSM 44728 1 1 No Streptomyces hygroscopicus subsp. jinggangensis 5008 1 1 No Actinosynnema mirum DSM 43827 2 1 No Kribbella flavida DSM 17836 2 2 No Salinispora arenicola CNS-205 1 1 No Salinispora tropica CNB-440 1 1 No Verrucosispora maris AB-18-032 1 1 No Micromonospora sp. L5 1 1 No Micromonospora aurantiaca ATCC 27029 1 1 No Actinoplanes sp. N902-109 1 1 No Rhodococcus jostii RHA1 2 1 No Rhodococcus opacus B4 2 1 No Amycolicicoccus subflavus DQS3-9A1 3 1 No Mycobacterium sp. JLS 1 1 No Mycobacterium intracellulare ATCC 13950 3 1 No Mycobacterium vanbaalenii PYR-1 1 1 No Mycobacterium rhodesiae NBB3 1 1 No Mycobacterium chubuense NBB4 3 1 No Anaerolinea thermophila UNI-1 2 1 No Sphaerobacter thermophilus DSM 20745 1 1 No Herpetosiphon aurantiacus DSM 785 7 6 No Roseiflexus sp. RS-1 3 2 No Roseiflexus castenholzii DSM 13941 1 1 No Chloroflexus sp. MS-G 3 3 No Chloroflexus sp. Y-400-fl 4 3 No Chloroflexus aggregans DSM 9485 2 2 No Chloroflexus aurantiacus J-10-fl 4 3 No Truepera radiovictrix DSM 17093 2 2 No Deinococcus deserti VCD115 2 1 No Deinococcus geothermalis DSM 11300 1 1 No Meiothermus silvanus DSM 9946 1 1 No Megamonas hypermegale 1 1 No Clostridium clariflavum DSM 19732 2 2 No Clostridium cellulolyticum H10 4 2 No Sulfobacillus acidophilus DSM 10332 1 1 No Syntrophobotulus glycolicus DSM 8271 1 1 No Desulfotomaculum kuznetsovii DSM 6115 2 2 No Eubacterium limosum KIST612 5 5 No Clostridium sp. BNL1100 3 3 No Clostridium perfringens ATCC 13124 1 1 No Clostridium cellulovorans 743B 9 5 No Clostridium botulinum A str. ATCC 3502 1 1 No Mahella australiensis 50-1 BON 1 1 No Streptococcus pneumoniae P1031 1 1 No Paenibacillus sp. JDR-2 1 1 No Paenibacillus mucilaginosus 3016 1 1 No Bacillus amyloliquefaciens FZB42 2 1 No Gemmatimonas aurantiaca T-27 1 1 No Melioribacter roseus P3M 1 1 No Ignavibacterium album JCM 16511 1 1 No Haliscomenobacter hydrossis DSM 1100 4 4 No Niastella koreensis GR20-10 3 3 No Chitinophaga pinensis DSM 2588 3 2 No Rhodothermus marinus DSM 4252 1 1 No Belliella baltica DSM 15883 1 1 No Cyclobacterium marinum DSM 745 5 5 No Fibrella aestuarina 3 3 No Leadbetterella byssophila DSM 17132 2 2 No Dyadobacter fermentans DSM 18053 5 5 No Cytophaga hutchinsonii ATCC 33406 4 2 No Spirosoma linguale DSM 74 4 4 No Parabacteroides distasonis ATCC 8503 4 3 No Tannerella forsythia ATCC 43037 2 2 No Paludibacter propionicigenes WB4 3 3 No Odoribacter splanchnicus DSM 20712 5 4 No Bacteroides sp. CF50 2 1 No Prevotella melaninogenica ATCC 25845 1 1 No Prevotella denticola F0289 1 1 No Prevotella ruminicola 23 1 1 No Bacteroides salanitronis DSM 18170 1 1 No Bacteroides helcogenes P 36-108 2 2 No Bacteroides vulgatus ATCC 8482 1 1 No Bacteroides thetaiotaomicron VPI-5482 1 1 No Bacteroides fragilis YCH46 8 8 No Pedobacter saltans DSM 12145 1 1 No Pedobacter heparinus DSM 2366 4 4 No Sphingobacterium sp. 21 3 2 No Fluviicola taffensis DSM 16823 1 1 No Owenweeksia hongkongensis DSM 17368 3 3 No Maribacter sp. HTCC2170 5 4 No Robiginitalea biformata HTCC2501 3 3 No Aequorivita sublithincola DSM 14238 1 1 No Zobellia galactanivorans 5 5 No Muricauda ruestringensis DSM 13258 4 4 No Cellulophaga algicola DSM 14237 1 1 No Cellulophaga lytica DSM 7489 1 1 No Ornithobacterium rhinotracheale DSM 15997 1 1 No Capnocytophaga canimorsus Cc5 1 1 No Capnocytophaga ochracea DSM 7271 1 1 No Flavobacterium johnsoniae UW101 2 2 No Phycisphaera mikurensis NBRC 102666 2 2 No Isosphaera pallida ATCC 43644 1 1 No Planctomyces brasiliensis DSM 5305 4 2 No Planctomyces limnophilus DSM 3776 1 1 No Rhodopirellula baltica SH 1 3 3 No Pirellula staleyi DSM 6068 6 3 No Opitutus terrae PB90-1 3 2 No Akkermansia muciniphila ATCC BAA-835 2 2 No Turneriella parva DSM 21527 2 1 No Leptospira borgpetersenii serovar Hardjo-bovis str. L550 2 1 No Leptospira interrogans serovar Lai str. IPAV 4 4 No Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 4 3 No Brachyspira murdochii DSM 12563 1 1 No Brachyspira intermedia PWS/A 1 1 No Brachyspira pilosicoli 95/1000 1 1 No Brachyspira hyodysenteriae WA1 1 1 No Candidatus Chloracidobacterium thermophilum B 3 1 No Candidatus Solibacter usitatus Ellin6076 2 1 No Granulicella mallensis MP5ACTX8 1 1 No Candidatus Koribacter versatilis Ellin345 8 5 No Terriglobus roseus DSM 18391 1 1 No Fusobacterium nucleatum subsp. nucleatum ATCC 25586 1 1 No candidate division WWE3 bacterium RAAC2_WWE3_1 2 1 No Candidatus Saccharimonas aalborgensis 5 1 No Desulfatibacillum alkenivorans AK-01 2 2 No Geobacter daltonii FRC-32 2 1 No Haliangium ochraceum DSM 14365 4 3 No Sorangium cellulosum 'So ce 56' 11 9 No Stigmatella aurantiaca DW4/3-1 15 10 No Corallococcus coralloides DSM 2259 20 12 No Myxococcus xanthus DK 1622 7 4 No Myxococcus fulvus HW-1 3 2 No Thauera sp. MZ1T 1 1 No Azoarcus sp. BH72 1 1 No Cupriavidus necator N-1 1 1 No Ramlibacter tataouinensis TTB310 1 1 No Variovorax paradoxus S110 1 1 No Acidovorax citrulli AAC00-1 1 1 No Acidovorax avenae subsp. avenae ATCC 19860 3 2 No Nitrosomonas sp. Is79A3 1 1 No Sideroxydans lithotrophicus ES-1 2 1 No Caulobacter sp. K31 1 1 No Hyphomonas neptunium ATCC 15444 2 1 No Azospirillum brasilense Sp245 2 2 No Methylobacterium chloromethanicum CM4 1 1 No Methylobacterium extorquens AM1 1 1 No Methylobacterium populi BJ001 1 1 No Parvibaculum lavamentivorans DS-1 2 1 No Brucella microti CCM 4915 1 1 No Brucella pinnipedialis B2/94 1 1 No Brucella canis ATCC 23365 1 1 No Brucella suis ATCC 23445 1 1 No Brucella melitensis ATCC 23457 1 1 No Brucella ovis ATCC 25840 1 1 No Brucella abortus S19 1 1 No Pelagibacterium halotolerans B2 1 1 No Aggregatibacter aphrophilus NJ8700 1 1 No Aggregatibacter actinomycetemcomitans D7S-1 1 1 No Gallibacterium anatis UMN179 1 1 No Pasteurella multocida subsp. multocida str. 3480 1 1 No Haemophilus influenzae PittEE 1 1 No Vibrio vulnificus MO6-24/O 1 1 No Vibrio cholerae O395 3 2 No Psychromonas sp. CNPT3 1 1 No Ferrimonas balearica DSM 9799 1 1 No Shewanella piezotolerans WP3 2 2 No Shewanella loihica PV-4 2 1 No Shewanella denitrificans OS217 1 1 No Shewanella pealeana ATCC 700345 2 2 No Shewanella woodyi ATCC 51908 1 1 No Shewanella frigidimarina NCIMB 400 2 1 No Colwellia psychrerythraea 34H 1 1 No Pseudoalteromonas atlantica T6c 2 2 No Pseudoalteromonas haloplanktis TAC125 1 1 No Glaciecola sp. 4H-3-7+YE-5 1 1 No Alteromonas sp. SN2 1 1 No Alteromonas macleodii str. 'Deep ecotype' 1 1 No Kangiella koreensis DSM 16069 2 1 No Hahella chejuensis KCTC 2396 1 1 No Methylomicrobium alcaliphilum 2 2 No Pseudoxanthomonas suwonensis 11-1 1 1 No Xanthomonas axonopodis pv. citri str. 306 1 1 No Xanthomonas campestris pv. campestris str. B100 1 1 No Nitrosococcus watsonii C-113 1 1 No Nitrosococcus halophilus Nc4 1 1 No Nitrosococcus oceani ATCC 19707 1 1 No Yersinia pseudotuberculosis IP 31758 1 1 No Yersinia pestis Pestoides F 1 1 No Yersinia enterocolitica subsp. enterocolitica 8081 1 1 No Shigella sonnei Ss046 1 1 No Shigella flexneri 5 str. 8401 1 1 No Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 1 1 No Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1 1 No Candidatus Caldiarchaeum subterraneum 1 1 No Nitrosopumilus maritimus SCM1 4 2 No Sulfolobus islandicus Y.N.15.51 1 1 No Sulfolobus solfataricus P2 1 1 No Sulfolobus acidocaldarius DSM 639 1 1 No Methanosphaerula palustris E1-9c 2 1 No Methanoculleus bourgensis MS2 1 1 No Archaeoglobus fulgidus DSM 4304 1 1 No Pyrococcus furiosus COM1 1 1 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 118 103 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 44 33 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 20 14 Yes Ascaris suum Victoria/Ghent Pig roundworm 17 14 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 27 21 Yes Cryptococcus neoformans var. grubii H99 3 2 Yes Cryptococcus neoformans B-3501A 5 4 Yes Cryptococcus neoformans JEC21 5 4 Yes Paracoccidioides brasiliensis Pb01 7 7 Yes Paracoccidioides brasiliensis Pb03 6 6 Yes Coccidioides posadasii str. Silveira 5 5 Yes Coccidioides immitis RMSCC 3703 5 5 Yes Coccidioides immitis RMSCC 2394 6 6 Yes Coccidioides immitis H538.4 5 5 Yes Ajellomyces dermatitidis ER-3 6 6 Yes Histoplasma capsulatum H143 9 8 Yes Histoplasma capsulatum H88 9 8 Yes Histoplasma capsulatum G186AR 8 8 Yes Aspergillus fumigatus A1163 7 6 Yes Candida albicans WO-1 4 4 Yes Saccharomyces cerevisiae UC5 7 6 Yes Saccharomyces cerevisiae PW5 4 4 Yes Saccharomyces cerevisiae FL100 4 2 Yes Saccharomyces cerevisiae CLIB324 3 3 Yes Saccharomyces cerevisiae CBS7960 6 5 Yes Saccharomyces cerevisiae YJM269 7 6 Yes Saccharomyces cerevisiae T7 8 7 Yes Saccharomyces cerevisiae FostersB 4 3 Yes Saccharomyces cerevisiae FostersO 4 4 Yes Saccharomyces cerevisiae VL3 6 5 Yes Saccharomyces cerevisiae Vin13 5 5 Yes Saccharomyces cerevisiae LalvinQA23 5 4 Yes Saccharomyces cerevisiae AWRI796 6 6 Yes Saccharomyces cerevisiae Sigma1278b 8 6 Yes Saccharomyces cerevisiae W303 8 6 Yes Saccharomyces cerevisiae JAY291 9 7 Yes Saccharomyces cerevisiae AWRI1631 5 4 Yes Saccharomyces cerevisiae YPS163 3 2 Yes Saccharomyces cerevisiae T73 2 2 Yes Saccharomyces cerevisiae CLIB215 7 6 Yes Saccharomyces cerevisiae Y10 3 3 Yes Saccharomyces cerevisiae YJM789 8 6 Yes Saccharomyces cerevisiae YJM789 8 6 Yes Saccharomyces cerevisiae RM11-1a 8 6 Yes Saccharomyces cerevisiae RM11-1a 8 6 Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 8 6 Yes Schizosaccharomyces pombe 972h- 3 3 Yes Batrachochytrium dendrobatidis JEL423 10 9 Yes Batrachochytrium dendrobatidis JAM81 10 9 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 55 52 Yes Hordeum vulgare 22 Domesticated barley 113 112 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 55 51 Yes Trypanosoma brucei Lister 427 v4.1 21 17 Yes Neospora caninum Nc-Liverpool 6.2 14 12 Yes Plasmodium falciparum HB3 10 9 Yes Plasmodium falciparum Dd2 12 10 No Crinalium epipsammum PCC 9333 1 1 No Gloeobacter kilaueensis Gloeobacter sp. JS 1 1 No Frankia sp. CcI3 1 1 No Streptomyces venezuelae ATCC 10712 2 1 No Streptomyces hygroscopicus subsp. jinggangensis TL01 1 1 No Actinoplanes friuliensis DSM 7358 2 2 No Mycobacterium sp. MOTT36Y 3 1 No Mycobacterium sp. KMS 3 1 No Mycobacterium sp. MCS 3 1 No Mycobacterium yongonense 05-1390 3 1 No Mycobacterium intracellulare MOTT-64 1 1 No Mycobacterium indicus pranii MTCC 9506 2 1 No Mycobacterium intracellulare MOTT-02 1 1 No Mycobacterium kansasii ATCC 12478 3 1 No Deinococcus peraridilitoris DSM 19664 3 3 No Clostridium thermocellum DSM 1313 1 1 No Sulfobacillus acidophilus TPY 1 1 No Clostridium autoethanogenum DSM 10061 1 1 No Clostridium perfringens str. 13 1 1 No Clostridium botulinum H04402 065 2 2 No Clostridium botulinum F str. 230613 2 1 No Clostridium botulinum F str. Langeland 3 2 No Clostridium botulinum B1 str. Okra 2 2 No Clostridium botulinum Ba4 str. 657 3 2 No Clostridium botulinum A2 str. Kyoto 3 2 No Clostridium botulinum A3 str. Loch Maree 2 2 No Clostridium botulinum A str. Hall 3 2 No Clostridium botulinum A str. ATCC 19397 2 1 No Streptococcus pneumoniae gamPNI0373 1 1 No Streptococcus pneumoniae D39 1 1 No Streptococcus pneumoniae R6 1 1 No Paenibacillus sp. Y412MC10 2 1 No Paenibacillus mucilaginosus KNP414 1 1 No Paenibacillus mucilaginosus K02 1 1 No Paenibacillus larvae subsp. larvae DSM 25430 1 1 No Paenibacillus polymyxa CR1 4 3 No Paenibacillus polymyxa E681 2 1 No Bacillus amyloliquefaciens subsp. plantarum UCMB5036 2 1 No Bacillus amyloliquefaciens CC178 2 1 No Bacillus amyloliquefaciens XH7 2 1 No Bacillus amyloliquefaciens TA208 2 1 No Bacillus amyloliquefaciens DSM 7 2 1 No Rhodothermus marinus SG0.5JP17-172 2 2 No Echinicola vietnamensis DSM 17526 2 2 No Emticicia oligotrophica DSM 17448 1 1 No Prevotella sp. oral taxon 299 str. F0039 1 1 No Prevotella dentalis DSM 3688 1 1 No Bacteroides xylanisolvens XB1A 2 2 No Bacteroides fragilis 638R 5 5 No Bacteroides fragilis NCTC 9343 7 7 No Nonlabens dokdonensis DSW-6 5 3 No Singulisphaera acidiphila DSM 18658 4 3 No Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 2 2 No Leptospira interrogans serovar Lai str. 56601 4 4 No Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 2 2 No Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' 4 3 No Brachyspira pilosicoli WesB 1 1 No Brachyspira pilosicoli B2904 1 1 No Brachyspira pilosicoli P43/6/78 1 1 No Leptospirillum ferriphilum ML-04 1 1 No Fusobacterium nucleatum subsp. vincentii 3_1_36A2 1 1 No Sorangium cellulosum So0157-2 17 10 No Anaeromyxobacter dehalogenans 2CP-C 2 1 No Myxococcus stipitatus DSM 14675 15 7 No Ralstonia solanacearum PSI07 1 1 No Burkholderia thailandensis MSMB121 1 1 No Variovorax paradoxus B4 1 1 No Variovorax paradoxus EPS 2 1 No Nitrosomonas sp. AL212 3 3 No Wolbachia endosymbiont of Drosophila simulans wNo 2 1 No Methylobacterium extorquens DM4 1 1 No Methylobacterium extorquens PA1 1 1 No Brucella ceti TE10759-12 1 1 No Brucella canis HSK A52141 1 1 No Brucella melitensis NI 1 1 No Brucella melitensis M5-90 1 1 No Brucella melitensis M28 1 1 No Brucella melitensis bv. 1 str. 16M 1 1 No Brucella abortus A13334 1 1 No Brucella melitensis biovar Abortus 2308 1 1 No Brucella abortus bv. 1 str. 9-941 1 1 No Aggregatibacter actinomycetemcomitans ANH9381 1 1 No Aggregatibacter actinomycetemcomitans D11S-1 1 1 No Pasteurella multocida 36950 1 1 No Pasteurella multocida subsp. multocida str. HN06 1 1 No Pasteurella multocida subsp. multocida str. Pm70 1 1 No Haemophilus influenzae KR494 1 1 No Haemophilus influenzae F3047 1 1 No Haemophilus influenzae F3031 1 1 No Haemophilus influenzae 10810 1 1 No Haemophilus influenzae PittGG 1 1 No Haemophilus influenzae 86-028NP 1 1 No Haemophilus influenzae R2866 1 1 No Haemophilus influenzae R2846 1 1 No Haemophilus influenzae Rd KW20 1 1 No Vibrio sp. EJY3 1 1 No Vibrio vulnificus YJ016 1 1 No Vibrio cholerae LMA3984-4 3 2 No Vibrio cholerae M66-2 3 2 No Vibrio cholerae O395 3 2 No Vibrio cholerae IEC224 3 2 No Vibrio cholerae O1 str. 2010EL-1786 3 2 No Vibrio cholerae MJ-1236 3 2 No Vibrio cholerae O1 biovar El Tor str. N16961 3 2 No Alteromonas macleodii str. 'Ionian Sea UM4b' 3 3 No Alteromonas macleodii str. 'Ionian Sea UM7' 3 3 No Alteromonas macleodii str. 'Ionian Sea U8' 3 3 No Alteromonas macleodii str. 'Ionian Sea U7' 3 3 No Alteromonas macleodii str. 'Ionian Sea U4' 3 3 No Alteromonas macleodii str. 'Aegean Sea MED64' 2 2 No Alteromonas macleodii str. 'English Channel 615' 2 2 No Alteromonas macleodii AltDE1 3 3 No Alteromonas macleodii str. 'English Channel 673' 1 1 No Alteromonas macleodii str. 'Balearic Sea AD45' 2 2 No Alteromonas macleodii str. 'Black Sea 11' 1 1 No Alteromonas macleodii ATCC 27126 1 1 No Xanthomonas citri subsp. citri Aw12879 1 1 No Xanthomonas campestris pv. vesicatoria str. 85-10 1 1 No Xanthomonas axonopodis pv. citrumelo F1 1 1 No Xanthomonas axonopodis Xac29-1 1 1 No Xanthomonas campestris pv. raphani 756C 1 1 No Xanthomonas campestris pv. campestris str. 8004 1 1 No Xanthomonas campestris pv. campestris str. ATCC 33913 1 1 No Morganella morganii subsp. morganii KT 1 1 No Yersinia pseudotuberculosis PB1/+ 1 1 No Yersinia pseudotuberculosis YPIII 1 1 No Yersinia pseudotuberculosis IP 32953 1 1 No Yersinia pestis biovar Microtus str. 91001 1 1 No Yersinia pestis A1122 1 1 No Yersinia pestis Z176003 1 1 No Yersinia pestis D182038 1 1 No Yersinia pestis D106004 1 1 No Yersinia pestis biovar Medievalis str. Harbin 35 1 1 No Yersinia pestis Nepal516 1 1 No Yersinia pestis Antiqua 1 1 No Yersinia pestis Angola 1 1 No Yersinia pestis CO92 1 1 No Yersinia pestis KIM10+ 1 1 No Yersinia enterocolitica subsp. palearctica 105.5R(r) 1 1 No Yersinia enterocolitica subsp. palearctica Y11 1 1 No Shigella sonnei 53G 1 1 No Shigella flexneri 2002017 1 1 No Shigella flexneri 2a str. 2457T 1 1 No Shigella flexneri 2a str. 301 1 1 No Shigella boydii Sb227 1 1 No Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 2 1 No Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 1 1 No Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 1 1 No Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 1 1 No Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 1 1 No Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 1 1 No Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 1 1 No Salmonella enterica subsp. enterica serovar Newport str. SL254 1 1 No Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. 798 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 1 1 No Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. Ty21a 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. CT18 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. Ty2 1 1 No Salmonella enterica serovar Bovismorbificans genomics 1 1 No Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 1 1 No Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 1 1 No Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 1 1 No Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. B182 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 2 2 No Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 1 1 No Salmonella enterica subsp. enterica serovar Pullorum str. S06004 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 1 1 No Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1 1 No Escherichia coli E24377A 1 1 No Escherichia coli E. coli PMV-1 1 1 No Escherichia coli JJ1886 2 2 No Escherichia coli LY180 1 1 No Escherichia coli APEC O78 1 1 No Escherichia coli O7:K1 str. CE10 1 1 No Escherichia coli NA114 1 1 No Escherichia coli str. 'clone D i2' 2 2 No Escherichia coli str. 'clone D i14' 2 2 No Escherichia coli UM146 1 1 No Escherichia coli 042 1 1 No Escherichia coli Xuzhou21 1 1 No Escherichia coli IHE3034 1 1 No Escherichia coli O83:H1 str. NRG 857C 1 1 No Escherichia coli ABU 83972 2 2 No Escherichia coli KO11FL 1 1 No Escherichia coli KO11FL 1 1 No Escherichia coli LF82 1 1 No Escherichia coli ED1a 2 2 No Escherichia coli IAI39 1 1 No Escherichia coli UMN026 2 2 No Escherichia coli S88 1 1 No Escherichia coli IAI1 1 1 No Escherichia coli W 1 1 No Escherichia coli W 1 1 No Escherichia coli DH1 1 1 No Escherichia coli DH1 1 1 No Escherichia coli BL21(DE3) 1 1 No Escherichia coli BL21(DE3) 1 1 No Escherichia coli SMS-3-5 1 1 No Escherichia coli SE15 1 1 No Escherichia coli SE11 1 1 No Escherichia coli APEC O1 1 1 No Escherichia coli O103:H2 str. 12009 1 1 No Escherichia coli UTI89 1 1 No Escherichia coli 536 1 1 No Escherichia coli HS 1 1 No Escherichia coli ETEC H10407 1 1 No Escherichia coli O55:H7 str. RM12579 1 1 No Escherichia coli O55:H7 str. CB9615 1 1 No Escherichia coli O26:H11 str. 11368 1 1 No Escherichia coli CFT073 2 2 No Escherichia coli O111:H- str. 11128 1 1 No Escherichia coli O127:H6 str. E2348/69 1 1 No Escherichia coli O157:H7 str. TW14359 1 1 No Escherichia coli O157:H7 str. EC4115 1 1 No Escherichia coli O157:H7 str. Sakai 1 1 No Escherichia coli O157:H7 str. EDL933 1 1 No Escherichia coli BW2952 1 1 No Escherichia coli str. K-12 substr. MG1655 1 1 No Escherichia coli str. K-12 substr. W3110 1 1 No Escherichia coli str. K-12 substr. DH10B 1 1 No Escherichia coli B str. REL606 1 1 No Pseudomonas fluorescens Pf0-1 2 2 No Sulfolobus islandicus LAL14/1 2 1 No Sulfolobus islandicus REY15A 2 1 No Sulfolobus islandicus HVE10/4 1 1 No Sulfolobus islandicus Y.G.57.14 2 1 No Sulfolobus islandicus L.S.2.15 1 1 No Sulfolobus islandicus M.16.27 1 1 No Sulfolobus islandicus M.14.25 1 1 No Sulfolobus islandicus M.16.4 1 1 No Sulfolobus islandicus L.D.8.5 1 1 No Sulfolobus solfataricus 98/2 1 1 No Methanolobus psychrophilus R15 3 3 No Methanoregula formicica Methanoregula formicicum SMSP 1 1 No Pyrococcus sp. NA2 1 1 No Pyrococcus furiosus DSM 3638 1 1 Yes Homo sapiens 75_37 (old version GRC) Human 224 190 Yes Homo sapiens Human 111 92 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 76 66 Yes Heliconius numata 4 4 Yes Loa loa v3.3 (Request) Eye worm 22 18 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 28 26 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 19 15 Yes Moniliophthora perniciosa FA553 3 3 Yes Encephalitozoon intestinalis 1 1 Yes Encephalitozoon cuniculi (endoparasite) 1 1 Yes Picea sitchensis Sitka spruce 7 7 Yes Lotus japonicus 51 49 Yes Malus x domestica (Duplicate) Apple 119 115 Yes Ricinus communis Castor bean 48 48 Yes Nicotiana benthamiana 0.4.4 (Early draft) 118 115 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 57 53 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 58 54 Yes Phoenix dactylifera Date palm 35 32 Yes Homo sapiens 69_37 Human 84 69 Yes Pan troglodytes 69_2.1.4 Chimpanzee 84 67 Yes Gorilla gorilla 69_3.1 Western gorilla 77 65 Yes Pongo abelii 69_2 Sumatran orangutan 79 69 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 64 57 Yes Macaca mulatta 69_1 Rhesus monkey 76 64 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 80 67 Yes Otolemur garnettii 69_3 Small-eared galago 81 67 Yes Microcebus murinus 69_1 Gray mouse lemur 65 53 Yes Rattus norvegicus 69_3.4 Norway rat 71 61 Yes Mus musculus 69_38 House mouse 78 68 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 65 57 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 75 63 Yes Cavia porcellus 69_3 Domestic guinea pig 77 66 Yes Oryctolagus cuniculus 69_2 Rabbit 81 68 Yes Ochotona princeps 69 American pika 74 58 Yes Tupaia belangeri 69 Northern tree shrew 63 53 Yes Sus scrofa 69_10.2 Pig 73 68 Yes Bos taurus 69_3.1 Cattle 73 62 Yes Vicugna pacos 69_1 Alpaca 58 46 Yes Tursiops truncatus 69_1 Bottlenose dolphin 71 61 Yes Mustela putorius furo 69_1.0 Domestic ferret 79 67 Yes Ailuropoda melanoleuca 69_1 Giant panda 71 63 Yes Canis familiaris 69_3.1 Dog 76 63 Yes Felis catus 69 Domestic cat 61 50 Yes Equus caballus 69_2 Horse 70 63 Yes Myotis lucifugus 69_2.0 Little brown bat 78 67 Yes Pteropus vampyrus 69_1 Large flying fox 71 62 Yes Sorex araneus 69_1 European shrew 59 51 Yes Erinaceus europaeus 69 Western European hedgehog 69 56 Yes Procavia capensis 69_1 Cape rock hyrax 66 54 Yes Loxodonta africana 69_3 African savanna elephant 73 64 Yes Echinops telfairi 69 Small Madagascar hedgehog 71 57 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 58 49 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 48 39 Yes Macropus eugenii 69_1.0 Tammar wallaby 73 60 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 68 61 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 80 69 Yes Ornithorhynchus anatinus 69_5 Platypus 72 64 Yes Petromyzon marinus 69_7.0 Sea lamprey 46 38 Yes Meleagris gallopavo 69_2 Turkey 67 58 Yes Gallus gallus 69_2 Chicken 70 60 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 71 62 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 68 59 Yes Anolis carolinensis 69_2.0 Green anole 79 72 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 72 62 Yes Latimeria chalumnae 69_1 Coelacanth 82 74 Yes Gadus morhua 69_1 Atlantic cod 83 70 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 94 81 Yes Takifugu rubripes 69_4 Torafugu 87 77 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 86 75 Yes Oryzias latipes 69_1 Japanese medaka 86 75 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 87 80 Yes Oreochromis niloticus 69_1.0 Nile tilapia 100 84 Yes Danio rerio 69_9 Zebrafish 92 83 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 38 31 Yes Ciona intestinalis 69 Vase tunicate 67 61 Yes Drosophila melanogaster 69_5 Fruit fly 24 17 Yes Caenorhabditis elegans 69_215 Roundworm 20 16 Yes Saccharomyces cerevisiae 69_4 Baker's yeast 8 6 Yes Arabidopsis thaliana 10 Thale cress 141 136 No 1_Upper_euphotic (meta-genome) 1 1 No 2_050719S (meta-genome) 1 1 No 2_Base_of_chrolophyll_max (meta-genome) 3 3 No 3_050719R (meta-genome) 3 3 No 3_Below_base_of_euphotic (meta-genome) 2 2 No 4_050719Q (meta-genome) 18 17 No 4_Deep_abyss (meta-genome) 5 5 No 5_050719P (meta-genome) 12 11 No 5_Below_upper_mesopelagic (meta-genome) 1 1 No 6_Upper_euphotic (meta-genome) 3 3 No 7_Oxygen_minimum_layer (meta-genome) 3 2 No Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 2 2 No Air microbial communities Singapore indoor air filters 1 (meta-genome) 2 2 No Air microbial communities Singapore indoor air filters 2 (meta-genome) 1 1 No Atta cephalotes fungus garden (ACEF) (meta-genome) 2 2 No Combined (meta-genome) 6 6 No Cyphomyrmex longiscapus fungus garden (meta-genome) 8 7 No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 No Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 1 1 No Dump bottom (Dump bottom) (meta-genome) 24 24 No Dump top (Dump top) (meta-genome) 10 10 No Endophytic microbiome from Rice (meta-genome) 4 4 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 7 7 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 9 9 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 5 5 No Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 7 7 No Fungus garden combined (combined) (meta-genome) 2 2 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 8 7 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 10 9 No Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 8 8 No Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 3 3 No Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 4 4 No Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 3 3 No Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 2 2 No Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 5 5 No Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome) 1 1 No Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 2 2 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome) 4 4 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 5 4 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 18 18 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 10 10 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 3 3 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome) 3 3 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome) 3 3 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 11 11 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 10 9 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 12 12 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 13 11 No Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 49 49 No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 47 47 No Marine anammox bioreactor enriched for Scalindua species (meta-genome) 5 5 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 126 124 No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 33 31 No Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 11 11 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 30 30 No Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 41 41 No Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 11 11 No Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 99 99 No Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 41 41 No NCBI 2017_08 genome 82849 73570 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 64 60 No Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 1 1 No Protozoadb 2010_08 (Protozoadb) 456 387 No simHC - Simulated High Complexity Metagenome (meta-genome) 6 6 No simLC - Simulated Low Complexity Metagenome (meta-genome) 5 5 No simMC - Simulated Medium Complexity Metagenome (meta-genome) 2 2 No Sludge/Australian, Phrap Assembly (meta-genome) 5 5 No Sludge/US, Jazz Assembly (meta-genome) 3 3 No Sludge/US, Phrap Assembly (meta-genome) 5 5 No Soil microbial communities from Minnesota Farm (meta-genome) 68 66 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 74 74 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 82 82 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 38 38 No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 42 42 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 108 108 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 143 143 No Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 8 6 No STRING v9.0.5 (STRING) 5026 4406 No Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 29 29 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 86 86 No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 62 62 No Termite Protist Endosymbiont Community (meta-genome) 1 1 No Uniprot 2018_03 genome 62485 54891 No Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 14 13 No Global Ocean Sampling Expedition (GOS) 1022 965 No NCBI plasmid sequences (Plasmids) 11 8 No NCBI viral sequences (Viral) 88 85 No PDB chains (SCOP 1.75 ) (PDB) 4 4 No Protein Data Bank (all PDB sequenc) 101 94 No SCOP2 SCOPe CATH ECOD (all domain sequ) 164 159 No TargetDB 155 139 No The Salmonella enterica Pan-genome (meta-genome) 25 24 No UniProt 231 231
