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B3 DNA binding domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1widA   4.9e-34   0.000000966   12-120   1wid A:  
1yelA   5.16e-25   0.00000118   6-104   1yel A:1-102  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3129 3129
No Yes Selaginella moellendorffii   8 8
No Yes Pinus taeda Loblolly pine 17 16
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 8 8
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   16 16
No Yes Citrus clementina v165   7 7
No Yes Citrus sinensis v154 Sweet orange 5 5
No Yes Thellungiella halophila v173   12 12
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 23 23
No Yes Capsella rubella v183   13 13
No Yes Arabidopsis lyrata Lyrate rockcress 13 13
No Yes Arabidopsis thaliana 10 Thale cress 16 16
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 6 6
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 12 12
No Yes Cucumis sativus v122 Cucumber 6 6
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 11 11
No Yes Prunus persica v139 Peach 5 5
No Yes Linum usitatissimum v200 Flax 5 5
No Yes Manihot esculenta v147 Cassava 7 7
No Yes Populus trichocarpa v156 Black cottonwood 13 13
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 4 4
No Yes Solanum lycopersicum v.2.3 Tomato 7 7
No Yes Solanum tuberosum Potato 9 9
No Yes Actinidia chinensis Hongyang   7 7
No Yes Aquilegia coerulea v195   4 4
No Yes Triticum urartu 22   7 7
No Yes Triticum aestivum 22 Bread wheat 29 29
No Yes Aegilops tauschii 22   9 9
No Yes Brachypodium distachyon Stiff brome 11 11
No Yes Oryza barthii 22 African wild rice 11 11
No Yes Oryza meridionalis 22   13 13
No Yes Oryza glumaepatula 22   13 13
No Yes Oryza glaberrima African rice 10 10
No Yes Oryza punctata 22   13 13
No Yes Oryza nivara 22   12 12
No Yes Oryza brachyantha 22 Malo sina 11 11
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 12 12
No Yes Oryza sativa v193 Rice 12 12
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 12 12
No Yes Panicum virgatum v202 Switchgrass 28 28
No Yes Setaria italica v164 Foxtail millet 12 12
No Yes Zea mays subsp. mays Maize 18 18
No Yes Zea mays v181 Maize 19 19
No Yes Sorghum bicolor Sorghum 12 12
No Yes Musa balbisiana Balbis banana 38 38
No Yes Musa acuminata 22 Wild Malaysian banana 21 21
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   2 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 5 5
No Yes Hordeum vulgare 22 Domesticated barley 32 32
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 14 14
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 11 11
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   13 13
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 7 7
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 7 7
No Yes Arabidopsis thaliana 10 Thale cress 12 12
No Yes NCBI 2017_08 genome   995 995
No Yes STRING v9.0.5 (STRING)   89 89
No Yes Uniprot 2018_03 genome   1070 1068
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6
No Yes TargetDB (Targets)   10 10

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