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  Home > Genomes > PDB chains (SCOP 1.75) > Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domains


Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1xhbA   6.5e-70   0.00000000000545   8-334   1xhb A:95-422  

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View all assignments containing a Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   22953 22953
No Yes Homo sapiens 76_38 Human 44 44
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 17 17
No Yes Gorilla gorilla 76_3.1 Western gorilla 18 18
No Yes Pongo abelii 76_2 Sumatran orangutan 17 17
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 21 21
No Yes Papio anubis 76 Olive baboon 22 22
No Yes Macaca mulatta 76_1 Rhesus monkey 23 23
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 34 34
No Yes Otolemur garnettii 76_3 Small-eared galago 20 20
No Yes Microcebus murinus 76_1 Gray mouse lemur 19 19
No Yes Rattus norvegicus 76_5.0 Norway rat 18 18
No Yes Mus musculus 76_38 House mouse 37 37
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 15 15
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 22 22
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 24 23
No Yes Cavia porcellus 76_3 Domestic guinea pig 17 17
No Yes Oryctolagus cuniculus 76_2 Rabbit 19 19
No Yes Ochotona princeps 76 American pika 17 16
No Yes Tupaia belangeri 76 Northern tree shrew 16 16
No Yes Sus scrofa 76_10.2 Pig 22 22
No Yes Bos taurus 76_3.1 Cattle 20 20
No Yes Ovis aries 76_3.1 Sheep 19 19
No Yes Vicugna pacos 76_1 Alpaca 11 11
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 18 18
No Yes Mustela putorius furo 76_1.0 Domestic ferret 19 19
No Yes Ailuropoda melanoleuca 76_1 Giant panda 21 21
No Yes Canis familiaris 76_3.1 Dog 24 24
No Yes Felis catus 76_6.2 Domestic cat 20 20
No Yes Equus caballus 76_2 Horse 20 20
No Yes Myotis lucifugus 76_2.0 Little brown bat 22 22
No Yes Pteropus vampyrus 76_1 Large flying fox 20 18
No Yes Sorex araneus 76_1 European shrew 10 9
No Yes Erinaceus europaeus 76 Western European hedgehog 14 14
No Yes Procavia capensis 76_1 Cape rock hyrax 15 14
No Yes Loxodonta africana 76_3 African savanna elephant 26 26
No Yes Echinops telfairi 76 Small Madagascar hedgehog 15 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 19 19
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 11 11
No Yes Macropus eugenii 76_1.0 Tammar wallaby 18 15
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 22 22
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 17 17
No Yes Ornithorhynchus anatinus 76_5 Platypus 16 16
No Yes Saccoglossus kowalevskii v3.0   25 25
No Yes Petromyzon marinus 76_7.0 Sea lamprey 19 19
No Yes Meleagris gallopavo 76_2 Turkey 18 18
No Yes Gallus gallus 76_4 Chicken 18 18
No Yes Anas platyrhynchos 76_1.0 Mallard 19 19
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 17 17
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 19 19
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 22 22
No Yes Anolis carolinensis 76_2.0 Green anole 21 21
No Yes Xenopus laevis African clawed frog 16 16
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 22 22
No Yes Latimeria chalumnae 76_1 Coelacanth 17 17
No Yes Lepisosteus oculatus 76 Spotted gar 29 29
No Yes Gadus morhua 76_1 Atlantic cod 19 19
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 21 21
No Yes Takifugu rubripes 76_4 Torafugu 40 40
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 26 26
No Yes Oryzias latipes 76_1 Japanese medaka 21 21
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 20 20
No Yes Poecilia formosa 76 Amazon molly 24 24
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 29 29
No Yes Astyanax mexicanus 76 Mexican tetra 20 20
No Yes Danio rerio 76_9 Zebrafish 39 39
No Yes Oikopleura dioica   15 15
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 19 19
No Yes Ciona intestinalis 76 Vase tunicate 9 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 21 19
No Yes Adineta vaga   28 28
No Yes Octopus bimaculoides 280   17 17
No Yes Crassostrea gigas 22 Pacific oyster 14 14
No Yes Lottia gigantea Owl limpet 26 26
No Yes Helobdella robusta   18 18
No Yes Capitella sp. I   29 29
No Yes Danaus plexippus OGS1.0 Monarch butterfly 11 11
No Yes Heliconius melpomene Postman butterfly 9 9
No Yes Bombyx mori Domestic silkworm 8 8
No Yes Nasonia vitripennis Jewel wasp 7 7
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 27 27
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 8 8
No Yes Linepithema humile v1.1 Argentine ant 8 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 6
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 8
No Yes Atta cephalotes v1.1   8 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 8 8
No Yes Lucilia cuprina Australian sheep blowfly 13 12
No Yes Drosophila grimshawi 1.3   12 12
No Yes Drosophila willistoni 1.3   14 13
No Yes Drosophila pseudoobscura 2.13   11 11
No Yes Drosophila persimilis 1.3   10 10
No Yes Drosophila suzukii   18 14
No Yes Drosophila yakuba 1.3   19 18
No Yes Drosophila simulans 1.3   14 13
No Yes Drosophila sechellia 1.3   14 14
No Yes Drosophila melanogaster 76_5 Fruit fly 25 25
No Yes Drosophila erecta 1.3   14 14
No Yes Drosophila ananassae 1.3   15 14
No Yes Drosophila virilis 1.2   12 12
No Yes Drosophila mojavensis 1.3   11 11
No Yes Megaselia scalaris 22   3 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 17 17
No Yes Culex pipiens quinquefasciatus Southern house mosquito 15 15
No Yes Anopheles darlingi 22 American malaria mosquito 18 13
No Yes Anopheles gambiae 49_3j African malaria mosquito 12 12
No Yes Tribolium castaneum 3.0 Red flour beetle 9 9
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 7
No Yes Acyrthosiphon pisum Pea aphid 7 7
No Yes Rhodnius prolixus 22   10 8
No Yes Daphnia pulex Common water flea 8 8
No Yes Strigamia maritima 22   10 8
No Yes Sarcoptes scabiei   7 7
No Yes Tetranychus urticae Two-spotted spider mite 10 10
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Pristionchus pacificus   10 10
No Yes Meloidogyne incognita Southern root-knot nematode 9 9
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   10 10
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 16 16
No Yes Caenorhabditis japonica   10 10
No Yes Caenorhabditis brenneri   10 10
No Yes Caenorhabditis remanei   13 13
No Yes Caenorhabditis elegans 76_235 Roundworm 30 30
No Yes Caenorhabditis briggsae 2   10 10
No Yes Trichinella spiralis 22   6 6
No Yes Hymenolepis microstoma   4 4
No Yes Echinococcus multilocularis   5 5
No Yes Echinococcus granulosus   5 5
No Yes Taenia solium Pork tapeworm 5 5
No Yes Schistosoma mansoni   5 5
No Yes Mnemiopsis leidyi Sea walnut 14 14
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   8 8
No Yes Nematostella vectensis 1.0 Starlet sea anemone 10 10
No Yes Hydra vulgaris   9 9
No Yes Amphimedon queenslandica   5 5
No Yes Trichoplax adhaerens   9 9
No Yes Proterospongia sp. ATCC 50818   11 11
No Yes Monosiga brevicollis   12 12
No Yes Aureococcus anophagefferens   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   9 9
No Yes Cryptosporidium hominis   4 4
No Yes Cryptosporidium muris   4 4
No Yes Cryptosporidium parvum Iowa II   4 4
No Yes Neospora caninum   4 4
No Yes Toxoplasma gondii VEG   5 5
No Yes Toxoplasma gondii ME49   5 5
No Yes Toxoplasma gondii GT1   5 5
No Yes Symbiodinium minutum clade B1 v1.2   8 8
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 31 31
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 25 25
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 13 13
No Yes Ascaris suum Victoria/Ghent Pig roundworm 11 11
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 18 18
No Yes Neospora caninum Nc-Liverpool 6.2   4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 50 50
No Yes Homo sapiens (NCBI version) Human 23 23
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 19 19
No Yes Loa loa v3.3 (Request) Eye worm 11 11
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 9 9
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 9 9
No Yes Homo sapiens 69_37 Human 22 22
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 16 16
No Yes Gorilla gorilla 69_3.1 Western gorilla 17 17
No Yes Pongo abelii 69_2 Sumatran orangutan 17 17
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 19 19
No Yes Macaca mulatta 69_1 Rhesus monkey 19 19
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 19 19
No Yes Otolemur garnettii 69_3 Small-eared galago 19 19
No Yes Microcebus murinus 69_1 Gray mouse lemur 19 19
No Yes Rattus norvegicus 69_3.4 Norway rat 21 21
No Yes Mus musculus 69_38 House mouse 21 21
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 15 15
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 19 19
No Yes Cavia porcellus 69_3 Domestic guinea pig 17 17
No Yes Oryctolagus cuniculus 69_2 Rabbit 19 19
No Yes Ochotona princeps 69 American pika 17 16
No Yes Tupaia belangeri 69 Northern tree shrew 16 16
No Yes Sus scrofa 69_10.2 Pig 20 20
No Yes Bos taurus 69_3.1 Cattle 19 19
No Yes Vicugna pacos 69_1 Alpaca 11 11
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 18 18
No Yes Mustela putorius furo 69_1.0 Domestic ferret 19 19
No Yes Ailuropoda melanoleuca 69_1 Giant panda 19 19
No Yes Canis familiaris 69_3.1 Dog 20 20
No Yes Felis catus 69 Domestic cat 17 15
No Yes Equus caballus 69_2 Horse 20 20
No Yes Myotis lucifugus 69_2.0 Little brown bat 20 20
No Yes Pteropus vampyrus 69_1 Large flying fox 20 18
No Yes Sorex araneus 69_1 European shrew 10 9
No Yes Erinaceus europaeus 69 Western European hedgehog 14 14
No Yes Procavia capensis 69_1 Cape rock hyrax 15 14
No Yes Loxodonta africana 69_3 African savanna elephant 20 20
No Yes Echinops telfairi 69 Small Madagascar hedgehog 15 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 14 14
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 11 11
No Yes Macropus eugenii 69_1.0 Tammar wallaby 18 15
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 19 19
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 17 17
No Yes Ornithorhynchus anatinus 69_5 Platypus 14 14
No Yes Petromyzon marinus 69_7.0 Sea lamprey 17 17
No Yes Meleagris gallopavo 69_2 Turkey 18 18
No Yes Gallus gallus 69_2 Chicken 18 18
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 17 17
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 17 17
No Yes Anolis carolinensis 69_2.0 Green anole 18 18
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 18 18
No Yes Latimeria chalumnae 69_1 Coelacanth 17 17
No Yes Gadus morhua 69_1 Atlantic cod 19 19
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 20 20
No Yes Takifugu rubripes 69_4 Torafugu 20 20
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 18 18
No Yes Oryzias latipes 69_1 Japanese medaka 15 15
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 20 20
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 24 24
No Yes Danio rerio 69_9 Zebrafish 24 24
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 10 10
No Yes Ciona intestinalis 69 Vase tunicate 9 9
No Yes Drosophila melanogaster 69_5 Fruit fly 15 15
No Yes Caenorhabditis elegans 69_215 Roundworm 9 9
No Yes NCBI 2017_08 genome   9665 9661
No Yes Protozoadb 2010_08 (Protozoadb)   30 30
No Yes STRING v9.0.5 (STRING)   800 794
No Yes Uniprot 2018_03 genome   6874 6742
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   51 51
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   34 34
No Yes TargetDB (Targets)   15 15

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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