SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > BAS1536-like domains in all bacterial and archaeal genomes


BAS1536-like family domain assignments
in
all bacterial and archaeal genomes

Assignment details

(show help)

8 selected genomes have 15 significant domains in 15 proteins.

Showing genomes 26 to 33 of 33
First Previous   1 2  

Bacillus cereus E33L has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|52140585|ref|YP_086243.1|   0.00000000000000353   0.0000648   52-103   2c0s A:1-57  
gi|52143733|ref|YP_083095.1|   0.000000000000017   0.0000703   19-70   2bzb A:1-54  
 
Weak hits:
gi|52144003|ref|YP_082825.1|   0.00000000000000602   0.0034   9-61   2bzb A:1-54  
gi|52144179|ref|YP_082648.1|   4.32e-16   0.0014   3-51   2c0s A:1-57  

Bacillus cereus ATCC 14579 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|30019769|ref|NP_831400.1|   0.0000000000000196   0.0000756   19-70   2bzb A:1-54  
 
Weak hits:
gi|30019301|ref|NP_830932.1|   0.00000000000000144   0.0014   3-51   2c0s A:1-57  
gi|30019485|ref|NP_831116.1|   0.00000000000000497   0.0034   9-62   2bzb A:1-54  
gi|30020484|ref|NP_832115.1|   0.000000000000017   0.00093   1-48   2bzb A:1-54  
gi|30022980|ref|NP_834611.1|   0.00000000000000222   0.00012   67-118   2c0s A:1-57  
gi|30023157|ref|NP_834788.1|   0.0811   0.013   173-200   2c0s A:1-57  

Bacillus cereus ATCC 10987 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|42780816|ref|NP_978063.1|   0.00000000000000981   0.0000843   19-70   2bzb A:1-54  
gi|42784123|ref|NP_981370.1|   0.00000000000000392   0.000079   52-103   2c0s A:1-57  
 
Weak hits:
gi|42780327|ref|NP_977574.1|   4.84e-16   0.0015   3-51   2c0s A:1-57  
gi|42780522|ref|NP_977769.1|   0.00000000000000157   0.0039   9-62   2bzb A:1-54  
gi|42781510|ref|NP_978757.1|   0.0000000000000942   0.001   1-48   2c0s A:1-57  

Bacillus anthracis str. H9401 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386735433|ref|YP_006208614.1|   0.00000000000000575   0.0000609   10-61   2bzb A:1-54  
gi|386738812|ref|YP_006211993.1|   5.23e-16   0.0000648   1-52   2c0s A:1-57  
 
Weak hits:
gi|386734958|ref|YP_006208139.1|   0.000000000051   0.0022   1-39   2c0s A:1-57  
gi|386735139|ref|YP_006208320.1|   0.0000000000000144   0.0035   9-61   2bzb A:1-54  
gi|386736169|ref|YP_006209350.1|   0.0000000000000942   0.001   1-48   2c0s A:1-57  

Bacillus anthracis str. CDC 684 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|227815522|ref|YP_002815531.1|   0.00000000000000575   0.0000609   10-61   2bzb A:1-54  
gi|227817711|ref|YP_002817720.1|   5.23e-16   0.0000648   1-52   2c0s A:1-57  
 
Weak hits:
gi|227814772|ref|YP_002814781.1|   0.0000000000000942   0.001   1-48   2c0s A:1-57  
gi|227815820|ref|YP_002815829.1|   0.0000000000000144   0.0035   9-61   2bzb A:1-54  
gi|227816005|ref|YP_002816014.1|   0.000000000051   0.0022   1-39   2c0s A:1-57  

Bacillus anthracis str. 'Ames Ancestor' has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|47526941|ref|YP_018290.1|   0.00000000000000902   0.0000609   19-70   2bzb A:1-54  
gi|47530480|ref|YP_021829.1|   0.00000000000000405   0.0000648   52-103   2c0s A:1-57  
 
Weak hits:
gi|291612210|ref|YP_003541024.1|   0.0000000000000144   0.0035   9-61   2bzb A:1-54  
gi|47527709|ref|YP_019058.1|   0.0000000000000942   0.001   1-48   2c0s A:1-57  

Bacillus anthracis str. Sterne has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|49184551|ref|YP_027803.1|   0.00000000000000902   0.0000609   19-70   2bzb A:1-54  
gi|49187799|ref|YP_031052.1|   0.00000000000000405   0.0000648   52-103   2c0s A:1-57  
 
Weak hits:
gi|49184268|ref|YP_027520.1|   0.0000000000000144   0.0035   9-61   2bzb A:1-54  

Bacillus anthracis str. Ames has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|270000526|ref|NP_847357.2|   5.23e-16   0.0000648   1-52   2c0s A:1-57  
gi|30261725|ref|NP_844102.1|   0.00000000000000902   0.0000609   19-70   2bzb A:1-54  
 
Weak hits:
gi|270000597|ref|YP_003329035.1|   0.0000000000000144   0.0035   9-61   2bzb A:1-54  
gi|30262416|ref|NP_844793.1|   0.0000000000000942   0.001   1-48   2c0s A:1-57  

First Previous   1 2  
Showing genomes 26 to 33 of 33

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a BAS1536-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   1906 1906
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   2 2
No Yes Bacillus anthracis str. A0248   2 2
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   2 2
No Yes Bacillus thuringiensis YBT-1518   2 2
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   2 2
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 2
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   2 2
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus FRI-35   2 2
No Yes Bacillus cereus biovar anthracis str. CI   2 2
No Yes Bacillus cereus AH820   2 2
No Yes Bacillus cereus AH187   2 2
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   2 2
No Yes Bacillus cereus NC7401   2 2
No Yes Bacillus cereus E33L   2 2
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   2 2
No Yes Bacillus anthracis str. H9401   2 2
No Yes Bacillus anthracis str. CDC 684   2 2
No Yes Bacillus anthracis str. 'Ames Ancestor'   2 2
No Yes Bacillus anthracis str. Sterne   2 2
No Yes Bacillus anthracis str. Ames   2 2
No Yes NCBI 2017_08 genome   1392 1392
No Yes STRING v9.0.5 (STRING)   28 28
No Yes Uniprot 2018_03 genome   405 405
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   3 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.