Select to display Genome Domains Proteins No ALL 110817 110817 Yes Homo sapiens 76_38 Human 119 33 Yes Pan troglodytes 76_2.1.4 Chimpanzee 59 9 Yes Gorilla gorilla 76_3.1 Western gorilla 97 13 Yes Pongo abelii 76_2 Sumatran orangutan 55 9 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 59 9 Yes Papio anubis 76 Olive baboon 64 10 Yes Macaca mulatta 76_1 Rhesus monkey 85 19 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 110 26 Yes Otolemur garnettii 76_3 Small-eared galago 54 8 Yes Microcebus murinus 76_1 Gray mouse lemur 41 8 Yes Rattus norvegicus 76_5.0 Norway rat 51 17 Yes Mus musculus 76_38 House mouse 110 25 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 51 8 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 19 8 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 44 11 Yes Cavia porcellus 76_3 Domestic guinea pig 59 10 Yes Oryctolagus cuniculus 76_2 Rabbit 56 10 Yes Ochotona princeps 76 American pika 46 8 Yes Tupaia belangeri 76 Northern tree shrew 44 7 Yes Sus scrofa 76_10.2 Pig 23 9 Yes Bos taurus 76_3.1 Cattle 56 9 Yes Ovis aries 76_3.1 Sheep 67 12 Yes Vicugna pacos 76_1 Alpaca 54 7 Yes Tursiops truncatus 76_1 Bottlenose dolphin 55 8 Yes Mustela putorius furo 76_1.0 Domestic ferret 55 8 Yes Ailuropoda melanoleuca 76_1 Giant panda 55 8 Yes Canis familiaris 76_3.1 Dog 66 10 Yes Felis catus 76_6.2 Domestic cat 61 10 Yes Equus caballus 76_2 Horse 59 11 Yes Myotis lucifugus 76_2.0 Little brown bat 54 7 Yes Pteropus vampyrus 76_1 Large flying fox 53 8 Yes Sorex araneus 76_1 European shrew 44 7 Yes Erinaceus europaeus 76 Western European hedgehog 32 6 Yes Procavia capensis 76_1 Cape rock hyrax 42 8 Yes Loxodonta africana 76_3 African savanna elephant 86 9 Yes Echinops telfairi 76 Small Madagascar hedgehog 45 6 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 56 9 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 41 5 Yes Macropus eugenii 76_1.0 Tammar wallaby 51 9 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 29 12 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 57 8 Yes Ornithorhynchus anatinus 76_5 Platypus 58 9 Yes Saccoglossus kowalevskii v3.0 67 15 Yes Petromyzon marinus 76_7.0 Sea lamprey 53 6 Yes Meleagris gallopavo 76_2 Turkey 18 6 Yes Gallus gallus 76_4 Chicken 54 7 Yes Anas platyrhynchos 76_1.0 Mallard 55 8 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 54 7 Yes Ficedula albicollis 76_1.0 Collared flycatcher 56 8 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 44 12 Yes Anolis carolinensis 76_2.0 Green anole 54 10 Yes Xenopus laevis African clawed frog 10 5 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 63 12 Yes Latimeria chalumnae 76_1 Coelacanth 64 12 Yes Lepisosteus oculatus 76 Spotted gar 113 15 Yes Gadus morhua 76_1 Atlantic cod 67 16 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 50 20 Yes Takifugu rubripes 76_4 Torafugu 271 66 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 114 20 Yes Oryzias latipes 76_1 Japanese medaka 71 14 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 68 15 Yes Poecilia formosa 76 Amazon molly 72 13 Yes Oreochromis niloticus 76_1.0 Nile tilapia 87 21 Yes Astyanax mexicanus 76 Mexican tetra 71 25 Yes Danio rerio 76_9 Zebrafish 105 25 Yes Oikopleura dioica 31 9 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 62 25 Yes Ciona intestinalis 76 Vase tunicate 23 10 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 60 11 Yes Adineta vaga 16 8 Yes Octopus bimaculoides 280 18 9 Yes Crassostrea gigas 22 Pacific oyster 69 13 Yes Lottia gigantea Owl limpet 40 9 Yes Helobdella robusta 3 2 Yes Capitella sp. I 31 7 Yes Danaus plexippus OGS1.0 Monarch butterfly 3 2 Yes Heliconius melpomene Postman butterfly 3 2 Yes Bombyx mori Domestic silkworm 2 1 Yes Nasonia vitripennis Jewel wasp 4 2 Yes Apis mellifera 38.2d (Not maintained) Honey bee 12 6 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 1 Yes Linepithema humile v1.1 Argentine ant 2 1 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2 Yes Solenopsis invicta v.2.2.3 Red fire ant 2 1 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1 Yes Atta cephalotes v1.1 2 1 Yes Camponotus floridanus v3.3 Florida carpenter ant 2 1 Yes Lucilia cuprina Australian sheep blowfly 2 1 Yes Drosophila grimshawi 1.3 2 1 Yes Drosophila willistoni 1.3 2 1 Yes Drosophila pseudoobscura 2.13 2 1 Yes Drosophila persimilis 1.3 2 1 Yes Drosophila suzukii 6 2 Yes Drosophila yakuba 1.3 2 1 Yes Drosophila simulans 1.3 2 1 Yes Drosophila sechellia 1.3 2 1 Yes Drosophila melanogaster 76_5 Fruit fly 14 7 Yes Drosophila erecta 1.3 2 1 Yes Drosophila ananassae 1.3 2 1 Yes Drosophila virilis 1.2 2 1 Yes Drosophila mojavensis 1.3 2 1 Yes Megaselia scalaris 22 2 1 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 1 Yes Culex pipiens quinquefasciatus Southern house mosquito 2 1 Yes Anopheles darlingi 22 American malaria mosquito 2 1 Yes Anopheles gambiae 49_3j African malaria mosquito 2 1 Yes Tribolium castaneum 3.0 Red flour beetle 2 1 Yes Pediculus humanus corporis Human body louse 4 2 Yes Acyrthosiphon pisum Pea aphid 2 1 Yes Rhodnius prolixus 22 3 3 Yes Daphnia pulex Common water flea 13 7 Yes Strigamia maritima 22 5 3 Yes Sarcoptes scabiei 4 2 Yes Tetranychus urticae Two-spotted spider mite 2 1 Yes Ixodes scapularis Black-legged tick 8 3 Yes Pristionchus pacificus 9 5 Yes Meloidogyne incognita Southern root-knot nematode 2 1 Yes Onchocerca volvulus 22 4 2 Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 1 Yes Caenorhabditis japonica 6 3 Yes Caenorhabditis brenneri 4 2 Yes Caenorhabditis remanei 6 3 Yes Caenorhabditis elegans 76_235 Roundworm 13 7 Yes Caenorhabditis briggsae 2 6 3 Yes Trichinella spiralis 22 4 2 Yes Hymenolepis microstoma 3 2 Yes Echinococcus multilocularis 2 1 Yes Echinococcus granulosus 2 1 Yes Taenia solium Pork tapeworm 2 1 Yes Schistosoma mansoni 3 2 Yes Mnemiopsis leidyi Sea walnut 4 2 Yes Acropora digitifera v1.0 47 13 Yes Nematostella vectensis 1.0 Starlet sea anemone 175 33 Yes Hydra vulgaris 27 5 Yes Amphimedon queenslandica 260 79 Yes Trichoplax adhaerens 6 3 Yes Proterospongia sp. ATCC 50818 89 6 Yes Monosiga brevicollis 88 7 Yes Capsaspora owczarzaki ATCC 30864 119 18 Yes Chlamydomonas reinhardtii 4.0 2 1 Yes Ostreococcus sp. RCC809 1 1 Yes Ostreococcus lucimarinus CCE9901 1 1 Yes Ostreococcus tauri 1 1 Yes Micromonas sp. RCC299 2 1 Yes Micromonas pusilla CCMP1545 v3.0 2 1 Yes Thecamonas trahens ATCC 50062 56 12 Yes Bigelowiella natans CCMP2755 22 3 3 Yes Ectocarpus siliculosus 5 4 Yes Aureococcus anophagefferens 4 3 Yes Albugo laibachii 22 2 2 Yes Pythium iwayamai DAOM BR242034 22 13 6 Yes Pythium arrhenomanes ATCC 12531 22 19 8 Yes Pythium ultimum v1.7-2 18 9 Yes Pythium aphanidermatum DAOM BR444 22 17 10 Yes Pythium irregulare DAOM BR486 22 20 8 Yes Pythium vexans DAOM BR484 22 12 6 Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3 Yes Phytophthora sojae 1.1 5 4 Yes Phytophthora infestans T30-4 13 6 Yes Phytophthora capsici 5 4 Yes Thalassiosira pseudonana CCMP1335 2 1 Yes Perkinsus marinus ATCC 50983 4 2 Yes Symbiodinium minutum clade B1 v1.2 33 29 Yes Trichomonas vaginalis 4 2 Yes Guillardia theta CCMP2712 v1.0 7 4 Yes Emiliania huxleyi CCMP1516 2 1 Yes Pseudanabaena sp. PCC 7367 14 7 Yes Acaryochloris marina MBIC11017 10 4 Yes Synechocystis sp. PCC 6803 5 5 Yes Synechococcus sp. PCC 7502 4 2 Yes Synechococcus sp. PCC 6312 6 3 Yes Synechococcus sp. CC9311 7 1 Yes Microcoleus sp. PCC 7113 1 1 Yes Trichodesmium erythraeum IMS101 45 13 Yes Geitlerinema sp. PCC 7407 1 1 Yes Cyanothece sp. PCC 8802 6 1 Yes Gloeocapsa sp. PCC 7428 5 2 Yes Halothece sp. PCC 7418 6 5 Yes Microcystis aeruginosa NIES-843 45 15 Yes Gloeobacter violaceus PCC 7421 1 1 Yes Rivularia sp. PCC 7116 15 8 Yes Calothrix sp. PCC 7507 1 1 Yes Anabaena variabilis ATCC 29413 6 3 Yes Nostoc sp. PCC 7107 5 3 Yes Nostoc punctiforme PCC 73102 7 4 Yes Nostoc sp. PCC 7120 18 6 Yes Nostoc sp. PCC 7524 12 9 Yes Anabaena sp. 90 12 9 Yes Conexibacter woesei DSM 14684 6 5 Yes Ilumatobacter coccineus 2 2 Yes Kineococcus radiotolerans SRS30216 1 1 Yes Streptomyces sp. PAMC26508 1 1 Yes Streptomyces flavogriseus ATCC 33331 1 1 Yes Streptomyces sp. SirexAA-E 1 1 Yes Streptomyces bingchenggensis BCW-1 1 1 Yes Streptomyces avermitilis MA-4680 2 2 Yes Streptomyces hygroscopicus subsp. jinggangensis 5008 1 1 Yes Actinosynnema mirum DSM 43827 1 1 Yes Amycolatopsis mediterranei U32 1 1 Yes Kribbella flavida DSM 17836 4 3 Yes Nocardioides sp. JS614 1 1 Yes Salinispora arenicola CNS-205 4 3 Yes Salinispora tropica CNB-440 2 2 Yes Micromonospora sp. L5 1 1 Yes Micromonospora aurantiaca ATCC 27029 1 1 Yes Actinoplanes sp. N902-109 5 1 Yes Actinoplanes sp. SE50/110 6 2 Yes Actinoplanes missouriensis 431 5 1 Yes Mycobacterium vanbaalenii PYR-1 6 1 Yes Mycobacterium gilvum PYR-GCK 6 1 Yes Cellulomonas fimi ATCC 484 2 1 Yes [Cellvibrio] gilvus ATCC 13127 1 1 Yes Caldilinea aerophila DSM 14535 = NBRC 104270 2 1 Yes Herpetosiphon aurantiacus DSM 785 12 7 Yes Roseiflexus sp. RS-1 1 1 Yes Roseiflexus castenholzii DSM 13941 1 1 Yes Chloroflexus sp. MS-G 7 3 Yes Chloroflexus sp. Y-400-fl 7 2 Yes Chloroflexus aggregans DSM 9485 5 2 Yes Chloroflexus aurantiacus J-10-fl 7 2 Yes Clostridium cellulolyticum H10 8 1 Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen 1 1 Yes Clostridium sp. BNL1100 8 1 Yes Clostridium perfringens ATCC 13124 1 1 Yes Streptococcus sp. I-P16 1 1 Yes Streptococcus sp. I-G2 1 1 Yes Streptococcus parasanguinis ATCC 15912 1 1 Yes Streptococcus oralis Uo5 2 2 Yes Paenibacillus mucilaginosus 3016 4 1 Yes Chlorobium chlorochromatii CaD3 6 2 Yes Haliscomenobacter hydrossis DSM 1100 14 3 Yes Saprospira grandis str. Lewin 2 2 Yes Niastella koreensis GR20-10 1 1 Yes Chitinophaga pinensis DSM 2588 32 3 Yes Salinibacter ruber M8 2 2 Yes Flexibacter litoralis DSM 6794 1 1 Yes Marivirga tractuosa DSM 4126 3 2 Yes Fibrella aestuarina 1 1 Yes Cytophaga hutchinsonii ATCC 33406 1 1 Yes Spirosoma linguale DSM 74 1 1 Yes Runella slithyformis DSM 19594 3 3 Yes Tannerella forsythia ATCC 43037 1 1 Yes Paludibacter propionicigenes WB4 1 1 Yes Odoribacter splanchnicus DSM 20712 1 1 Yes Prevotella melaninogenica ATCC 25845 1 1 Yes Alistipes finegoldii DSM 17242 1 1 Yes Bacteroides helcogenes P 36-108 3 2 Yes Bacteroides thetaiotaomicron VPI-5482 1 1 Yes Bacteroides fragilis YCH46 2 1 Yes Pedobacter saltans DSM 12145 46 1 Yes Solitalea canadensis DSM 3403 43 5 Yes Pedobacter heparinus DSM 2366 1 1 Yes Fluviicola taffensis DSM 16823 5 5 Yes Owenweeksia hongkongensis DSM 17368 1 1 Yes Zunongwangia profunda SM-A87 1 1 Yes Krokinobacter sp. 4H-3-7-5 23 1 Yes Lacinutrix sp. 5H-3-7-4 3 3 Yes Maribacter sp. HTCC2170 4 2 Yes Robiginitalea biformata HTCC2501 10 4 Yes Croceibacter atlanticus HTCC2559 4 4 Yes Zobellia galactanivorans 5 3 Yes Muricauda ruestringensis DSM 13258 6 2 Yes Cellulophaga algicola DSM 14237 3 2 Yes Cellulophaga lytica DSM 7489 3 2 Yes Polaribacter sp. MED152 4 2 Yes Flavobacterium indicum GPTSA100-9 2 2 Yes Flavobacterium psychrophilum JIP02/86 16 3 Yes Isosphaera pallida ATCC 43644 23 6 Yes Rhodopirellula baltica SH 1 39 7 Yes Pirellula staleyi DSM 6068 6 1 Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 1 1 Yes Candidatus Nitrospira defluvii 1 1 Yes Bdellovibrio bacteriovorus HD100 8 6 Yes Arcobacter sp. L 7 2 Yes Arcobacter butzleri RM4018 2 1 Yes Campylobacter hominis ATCC BAA-381 1 1 Yes uncultured Sulfuricurvum sp. RIFRC-1 10 4 Yes Sulfuricurvum kujiense DSM 16994 1 1 Yes Sulfurimonas denitrificans DSM 1251 1 1 Yes Desulfobacca acetoxidans DSM 11109 2 2 Yes Syntrophobacter fumaroxidans MPOB 3 3 Yes Desulfobulbus propionicus DSM 2032 5 1 Yes Geobacter sulfurreducens KN400 37 1 Yes Pelobacter carbinolicus DSM 2380 4 1 Yes Sorangium cellulosum 'So ce 56' 1 1 Yes Anaeromyxobacter sp. Fw109-5 9 2 Yes Azoarcus sp. KH32C 1 1 Yes Azoarcus sp. BH72 1 1 Yes Laribacter hongkongensis HLHK9 1 1 Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1 1 1 Yes beta proteobacterium CB 2 1 Yes Leptothrix cholodnii SP-6 7 3 Yes Polaromonas sp. JS666 2 2 Yes Polaromonas naphthalenivorans CJ2 1 1 Yes Acidovorax sp. KKS102 9 3 Yes Methylotenera versatilis 301 2 1 Yes Phenylobacterium zucineum HLK1 2 1 Yes Sphingobium japonicum UT26S 1 1 Yes Sphingobium chlorophenolicum L-1 1 1 Yes Pseudovibrio sp. FO-BEG1 1 1 Yes Rhodobacter sphaeroides ATCC 17029 6 1 Yes Azospirillum lipoferum 4B 2 2 Yes Azospirillum sp. B510 2 2 Yes Azospirillum brasilense Sp245 12 6 Yes Azorhizobium caulinodans ORS 571 8 1 Yes Methylobacterium chloromethanicum CM4 2 1 Yes Methylobacterium extorquens AM1 2 1 Yes Bradyrhizobium japonicum USDA 110 5 1 Yes Saccharophagus degradans 2-40 2 2 Yes Teredinibacter turnerae T7901 3 3 Yes Aeromonas veronii B565 1 1 Yes Aeromonas salmonicida subsp. salmonicida A449 3 2 Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966 3 2 Yes Vibrio sp. Ex25 16 3 Yes Vibrio harveyi ATCC BAA-1116 7 1 Yes Vibrio parahaemolyticus RIMD 2210633 14 2 Yes Vibrio splendidus LGP32 6 1 Yes Vibrio cholerae O395 3 1 Yes Ferrimonas balearica DSM 9799 1 1 Yes Shewanella piezotolerans WP3 3 2 Yes Shewanella loihica PV-4 2 2 Yes Shewanella sediminis HAW-EB3 1 1 Yes Shewanella denitrificans OS217 5 4 Yes Shewanella pealeana ATCC 700345 2 2 Yes Shewanella oneidensis MR-1 1 1 Yes Shewanella baltica OS185 1 1 Yes Shewanella woodyi ATCC 51908 6 5 Yes Shewanella amazonensis SB2B 2 1 Yes Shewanella violacea DSS12 2 2 Yes Shewanella putrefaciens CN-32 1 1 Yes Colwellia psychrerythraea 34H 1 1 Yes Glaciecola sp. 4H-3-7+YE-5 6 3 Yes Glaciecola nitratireducens FR1064 2 1 Yes Marinobacter adhaerens HP15 1 1 Yes Marinobacter hydrocarbonoclasticus ATCC 49840 1 1 Yes Marinobacter aquaeolei VT8 1 1 Yes Kangiella koreensis DSM 16069 1 1 Yes Hahella chejuensis KCTC 2396 5 5 Yes Marinomonas sp. MWYL1 5 1 Yes Marinomonas mediterranea MMB-1 1 1 Yes Methylococcus capsulatus str. Bath 1 1 Yes Dichelobacter nodosus VCS1703A 1 1 Yes Pseudoxanthomonas spadix BD-a59 1 1 Yes Xanthomonas axonopodis pv. citri str. 306 1 1 Yes Xanthomonas oryzae pv. oryzae PXO99A 2 1 Yes Xanthomonas campestris pv. campestris str. B100 3 2 Yes Thiocystis violascens DSM 198 3 2 Yes Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 1 1 Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421 1 1 Yes Pseudomonas entomophila L48 1 1 Yes Pseudomonas fulva 12-X 15 1 Yes Pseudomonas putida F1 8 1 Yes Pseudomonas protegens Pf-5 1 1 Yes Pseudomonas sp. VLB120 1 1 Yes Psychrobacter sp. PRwf-1 19 2 Yes Methanocella conradii HZ254 2 1 Yes Methanocella paludicola SANAE 18 6 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 72 18 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 6 3 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 1 Yes Ascaris suum Victoria/Ghent Pig roundworm 6 3 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 13 7 Yes Chamaesiphon minutus PCC 6605 21 3 Yes Synechocystis sp. PCC 6803 substr. PCC-P 4 4 Yes Synechocystis sp. PCC 6803 substr. PCC-N 4 4 Yes Synechocystis sp. PCC 6803 substr. GT-I 4 4 Yes Synechocystis sp. PCC 6803 5 5 Yes Cyanobium gracile PCC 6307 15 3 Yes Dactylococcopsis salina PCC 8305 5 3 Yes Synechococcus sp. WH 8102 2 2 Yes Synechococcus sp. WH 7803 1 1 Yes Crinalium epipsammum PCC 9333 1 1 Yes Oscillatoria nigro-viridis PCC 7112 16 8 Yes Oscillatoria acuminata PCC 6304 32 9 Yes Arthrospira platensis NIES-39 43 11 Yes Cyanothece sp. PCC 7822 25 10 Yes Cyanothece sp. PCC 7424 9 2 Yes Cyanothece sp. ATCC 51142 28 7 Yes Cyanothece sp. PCC 8801 6 1 Yes Cyanobacterium aponinum PCC 10605 12 6 Yes Gloeobacter kilaueensis Gloeobacter sp. JS 1 1 Yes Stanieria cyanosphaera PCC 7437 5 3 Yes Calothrix parietina Calothrix sp. PCC 6303 6 3 Yes Cylindrospermum stagnale PCC 7417 2 2 Yes Anabaena cylindrica PCC 7122 30 11 Yes Streptomyces davawensis JCM 4913 1 1 Yes Streptomyces fulvissimus DSM 40593 1 1 Yes Streptomyces venezuelae ATCC 10712 1 1 Yes Streptomyces collinus Tu 365 1 1 Yes Streptomyces hygroscopicus subsp. jinggangensis TL01 1 1 Yes Amycolatopsis mediterranei RB 1 1 Yes Amycolatopsis mediterranei S699 1 1 Yes Amycolatopsis mediterranei S699 1 1 Yes Amycolatopsis orientalis HCCB10007 2 2 Yes Actinoplanes friuliensis DSM 7358 6 2 Yes Mycobacterium gilvum Spyr1 6 1 Yes Clostridium perfringens SM101 1 1 Yes Clostridium perfringens str. 13 1 1 Yes Streptococcus parasanguinis FW213 1 1 Yes Streptococcus pneumoniae JJA 1 1 Yes Paenibacillus mucilaginosus KNP414 4 1 Yes Paenibacillus mucilaginosus K02 4 1 Yes Salinibacter ruber DSM 13855 1 1 Yes Echinicola vietnamensis DSM 17526 2 1 Yes Bacteroides xylanisolvens XB1A 2 2 Yes Bacteroides fragilis 638R 2 1 Yes Bacteroides fragilis NCTC 9343 2 1 Yes Nonlabens dokdonensis DSW-6 56 3 Yes Psychroflexus torquis ATCC 700755 5 3 Yes Singulisphaera acidiphila DSM 18658 11 6 Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' 1 1 Yes Bdellovibrio exovorus JSS 2 1 Yes Bdellovibrio bacteriovorus str. Tiberius 10 8 Yes Arcobacter butzleri 7h1h 2 1 Yes Arcobacter butzleri ED-1 4 1 Yes Desulfovibrio vulgaris RCH1 3 1 Yes Desulfovibrio vulgaris str. 'Miyazaki F' 5 2 Yes Desulfovibrio vulgaris str. Hildenborough 3 1 Yes Geobacter sulfurreducens PCA 37 1 Yes Nitrosomonas sp. AL212 7 1 Yes Octadecabacter arcticus 238 7 1 Yes Rhodobacter sphaeroides KD131 6 1 Yes Rhodobacter sphaeroides 2.4.1 6 1 Yes Methylobacterium extorquens DM4 2 1 Yes Rhizobium etli CFN 42 2 1 Yes Rhodopseudomonas palustris DX-1 1 1 Yes Rhodopseudomonas palustris TIE-1 1 1 Yes Rhodopseudomonas palustris HaA2 3 2 Yes Simiduia agarivorans SA1 = DSM 21679 1 1 Yes Aeromonas hydrophila ML09-119 3 2 Yes Vibrio parahaemolyticus BB22OP 9 2 Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749 28 10 Yes Vibrio cholerae M66-2 3 1 Yes Vibrio cholerae O395 3 1 Yes Vibrio cholerae O1 str. 2010EL-1786 3 1 Yes Vibrio cholerae MJ-1236 3 1 Yes Shewanella sp. W3-18-1 1 1 Yes Shewanella sp. ANA-3 2 2 Yes Shewanella baltica BA175 1 1 Yes Shewanella baltica OS678 1 1 Yes Shewanella baltica OS117 1 1 Yes Shewanella baltica OS195 1 1 Yes Shewanella baltica OS155 1 1 Yes Shewanella putrefaciens 200 1 1 Yes Glaciecola psychrophila 170 4 3 Yes Alteromonas macleodii str. 'English Channel 673' 4 2 Yes Alteromonas macleodii str. 'Balearic Sea AD45' 2 1 Yes Alteromonas macleodii str. 'Black Sea 11' 2 1 Yes Alteromonas macleodii ATCC 27126 2 1 Yes Xanthomonas citri subsp. citri Aw12879 1 1 Yes Xanthomonas campestris pv. vesicatoria str. 85-10 5 2 Yes Xanthomonas axonopodis pv. citrumelo F1 5 2 Yes Xanthomonas oryzae pv. oryzae MAFF 311018 3 2 Yes Xanthomonas oryzae pv. oryzae KACC 10331 2 1 Yes Xanthomonas campestris pv. raphani 756C 3 2 Yes Xanthomonas campestris pv. campestris str. 8004 3 2 Yes Xanthomonas campestris pv. campestris str. ATCC 33913 3 2 Yes Spiribacter salinus M19-40 2 2 Yes Pseudomonas monteilii SB3101 3 1 Yes Pseudomonas monteilii SB3078 3 1 Yes Pseudomonas putida HB3267 10 1 Yes Pseudomonas putida NBRC 14164 5 1 Yes Pseudomonas putida S16 3 1 Yes Pseudomonas putida BIRD-1 10 1 Yes Pseudomonas putida W619 1 1 Yes Pseudomonas putida ND6 5 2 Yes Pseudomonas putida KT2440 10 1 Yes Pseudomonas putida GB-1 8 1 Yes Pseudomonas protegens CHA0 1 1 Yes Pseudomonas fluorescens F113 1 1 Yes Pseudomonas fluorescens A506 1 1 Yes Pseudomonas fluorescens R124 1 1 Yes Pseudomonas fluorescens Pf0-1 2 1 Yes Pseudomonas resinovorans NBRC 106553 11 1 Yes Methylophaga sp. JAM7 1 1 Yes Thermococcus litoralis DSM 5473 1 1 Yes Homo sapiens 75_37 (old version GRC) Human 131 39 Yes Homo sapiens Human 74 18 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 59 9 Yes Loa loa v3.3 (Request) Eye worm 4 2 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 2 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1 Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 7 1 Yes Homo sapiens 69_37 Human 59 9 Yes Pan troglodytes 69_2.1.4 Chimpanzee 59 9 Yes Gorilla gorilla 69_3.1 Western gorilla 56 9 Yes Pongo abelii 69_2 Sumatran orangutan 55 9 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 59 9 Yes Macaca mulatta 69_1 Rhesus monkey 55 8 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 62 11 Yes Otolemur garnettii 69_3 Small-eared galago 54 8 Yes Microcebus murinus 69_1 Gray mouse lemur 41 8 Yes Rattus norvegicus 69_3.4 Norway rat 35 9 Yes Mus musculus 69_38 House mouse 61 10 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 51 8 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 19 8 Yes Cavia porcellus 69_3 Domestic guinea pig 56 8 Yes Oryctolagus cuniculus 69_2 Rabbit 51 9 Yes Ochotona princeps 69 American pika 46 8 Yes Tupaia belangeri 69 Northern tree shrew 44 7 Yes Sus scrofa 69_10.2 Pig 16 6 Yes Bos taurus 69_3.1 Cattle 54 8 Yes Vicugna pacos 69_1 Alpaca 54 7 Yes Tursiops truncatus 69_1 Bottlenose dolphin 55 8 Yes Mustela putorius furo 69_1.0 Domestic ferret 55 8 Yes Ailuropoda melanoleuca 69_1 Giant panda 55 8 Yes Canis familiaris 69_3.1 Dog 55 7 Yes Felis catus 69 Domestic cat 39 9 Yes Equus caballus 69_2 Horse 57 9 Yes Myotis lucifugus 69_2.0 Little brown bat 54 7 Yes Pteropus vampyrus 69_1 Large flying fox 53 8 Yes Sorex araneus 69_1 European shrew 44 7 Yes Erinaceus europaeus 69 Western European hedgehog 32 6 Yes Procavia capensis 69_1 Cape rock hyrax 42 8 Yes Loxodonta africana 69_3 African savanna elephant 45 6 Yes Echinops telfairi 69 Small Madagascar hedgehog 45 6 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 43 7 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 41 5 Yes Macropus eugenii 69_1.0 Tammar wallaby 51 9 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 27 10 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 57 8 Yes Ornithorhynchus anatinus 69_5 Platypus 53 8 Yes Petromyzon marinus 69_7.0 Sea lamprey 49 5 Yes Meleagris gallopavo 69_2 Turkey 18 6 Yes Gallus gallus 69_2 Chicken 52 7 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 54 7 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 40 9 Yes Anolis carolinensis 69_2.0 Green anole 52 9 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 62 11 Yes Latimeria chalumnae 69_1 Coelacanth 63 11 Yes Gadus morhua 69_1 Atlantic cod 63 15 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 39 15 Yes Takifugu rubripes 69_4 Torafugu 77 15 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 67 14 Yes Oryzias latipes 69_1 Japanese medaka 65 12 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 68 15 Yes Oreochromis niloticus 69_1.0 Nile tilapia 77 15 Yes Danio rerio 69_9 Zebrafish 75 14 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 14 5 Yes Ciona intestinalis 69 Vase tunicate 18 9 Yes Drosophila melanogaster 69_5 Fruit fly 2 1 Yes Caenorhabditis elegans 69_215 Roundworm 6 3 Yes 1_Upper_euphotic (meta-genome) 3 3 Yes 2_Base_of_chrolophyll_max (meta-genome) 3 3 Yes 3_050719R (meta-genome) 1 1 Yes 3_Below_base_of_euphotic (meta-genome) 1 1 Yes 4_050719Q (meta-genome) 10 8 Yes 4_Deep_abyss (meta-genome) 4 3 Yes 5_050719P (meta-genome) 13 9 Yes 5_Below_upper_mesopelagic (meta-genome) 4 4 Yes 6_Upper_euphotic (meta-genome) 16 10 Yes 7_Oxygen_minimum_layer (meta-genome) 7 4 Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 41 36 Yes Air microbial communities Singapore indoor air filters 1 (meta-genome) 1 1 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 1 1 Yes Combined (meta-genome) 14 13 Yes Cyphomyrmex longiscapus fungus garden (meta-genome) 23 23 Yes Dump bottom (Dump bottom) (meta-genome) 14 13 Yes Dump top (Dump top) (meta-genome) 15 14 Yes Endophytic microbiome from Rice (meta-genome) 3 2 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 6 4 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 5 4 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 9 5 Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 7 7 Yes Fungus garden combined (combined) (meta-genome) 3 3 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 15 15 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 9 9 Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 6 4 Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 19 15 Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 17 14 Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 13 9 Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 3 3 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 10 6 Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 9 7 Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 12 8 Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 1 1 Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 3 3 Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 3 3 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 10 7 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 17 14 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 11 7 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 9 7 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 9 5 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 20 17 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 13 7 Yes Human Gut Community Subject 7 (meta-genome) 1 1 Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 1 1 Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 27 21 Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 29 28 Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome) 10 6 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 276 171 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 82 48 Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 9 7 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 80 52 Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 65 41 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 41 24 Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 52 47 Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 31 30 Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 3 3 Yes NCBI 2017_08 genome 52077 16545 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 51 30 Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 20 3 Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome) 10 1 Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome) 2 2 Yes Protozoadb 2010_08 (Protozoadb) 8 4 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 25 18 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 16 15 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 8 5 Yes Sludge/Australian, Phrap Assembly (meta-genome) 11 9 Yes Sludge/US, Jazz Assembly (meta-genome) 12 7 Yes Sludge/US, Phrap Assembly (meta-genome) 33 15 Yes Soil microbial communities from Minnesota Farm (meta-genome) 85 51 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 93 85 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 123 116 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 73 66 Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 97 90 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 102 84 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 60 54 Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 3 1 Yes STRING v9.0.5 (STRING) 2616 611 Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 19 18 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 104 92 Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 26 22 Yes Termite Protist Endosymbiont Community (meta-genome) 1 1 Yes Uniprot 2018_03 genome 32196 12754 Yes Uranium Contaminated Groundwater FW106 (meta-genome) 1 1 Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 16 12 Yes Global Ocean Sampling Expedition (GOS) 3015 1623 Yes NCBI plasmid sequences (Plasmids) 108 34 Yes NCBI viral sequences (Viral) 13 13 Yes PDB chains (SCOP 1.75 ) (PDB) 3 3 Yes Protein Data Bank (all PDB sequenc) 39 32 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 62 62 Yes TargetDB 81 28 Yes UniProt 6 3
