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  Home > Genomes > Nematostella vectensis 1.0 > TM0957-like domains


TM0957-like superfamily domain assignments
in
Nematostella vectensis 1.0


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Select to display   Genome       Domains   Proteins
No Yes ALL   7809 7809
No Yes Caenorhabditis japonica   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga neapolitana DSM 4359   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Ochrobactrum anthropi ATCC 49188   2 2
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium radiobacter K84   2 2
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Spiribacter sp. UAH-SP71   1 1
No Yes Yersinia pseudotuberculosis IP 31758   2 2
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Dickeya dadantii Ech703   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pantoea sp. At-9b   2 2
No Yes Pantoea vagans C9-1   2 2
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   2 2
No Yes Enterobacter asburiae LF7a   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Thermobacillus composti KWC4   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Yersinia pseudotuberculosis PB1/+   2 2
No Yes Yersinia pseudotuberculosis YPIII   2 2
No Yes Yersinia pseudotuberculosis IP 32953   2 2
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Dickeya dadantii 3937   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli SE15   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   6 6
No Yes Combined (meta-genome)   12 12
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   5 5
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   6300 6300
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   63 63
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1142 1142
No Yes Global Ocean Sampling Expedition (GOS)   8 8
No Yes NCBI plasmid sequences (Plasmids)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   8 8
No Yes TargetDB (Targets)   5 5

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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