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  Home > Genomes > Glutathionylspermidine synthase substrate-binding domain-like domains in all bacterial and archaeal genomes


Glutathionylspermidine synthase substrate-binding domain-like family domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 165
  1 2 3 4 5 6 7   Next Last

Rhodospirillum rubrum F11 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386351818|ref|YP_006050066.1|   1.15e-36   0.0000641   386-518   2io8 A:379-496  

Aggregatibacter aphrophilus NJ8700 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|251793685|ref|YP_003008415.1|   1.04e-36   0.0000198   384-514   2io8 A:379-496  
 
Weak hits:
gi|251793583|ref|YP_003008312.1|   8.06e-30   0.026   177-279   2io8 A:379-496  

Aggregatibacter actinomycetemcomitans D7S-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|387121041|ref|YP_006286924.1|   6.33e-37   0.0000192   384-514   2io8 A:379-496  

Haemophilus parainfluenzae T3T1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|345429565|ref|YP_004822683.1|   1.67e-36   0.000023   384-514   2io8 A:379-496  
 
Weak hits:
gi|345428911|ref|YP_004822027.1|   1.15e-28   0.024   176-279   2io8 A:379-496  

Actinobacillus succinogenes 130Z has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|152978480|ref|YP_001344109.1|   5.18e-34   0.0000241   384-513   2io8 A:379-496  

Psychromonas ingrahamii 37 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|119944984|ref|YP_942664.1|   6.62e-36   0.0000597   382-514   2io8 A:379-496  

Pseudoalteromonas haloplanktis TAC125 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|77361371|ref|YP_340946.1|   1.58e-35   0.0000342   383-515   2io8 A:379-496  

Glaciecola nitratireducens FR1064 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|348027702|ref|YP_004870388.1|   8.34e-33   0.0000958   386-517   2io8 A:379-496  
 
Weak hits:
gi|348028445|ref|YP_004871131.1|   1.12e-39   0.018   149-255   2io8 A:379-496  

Marinomonas sp. MWYL1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|152994258|ref|YP_001339093.1|   4.89e-37   0.0000342   385-517   2io8 A:379-496  

Proteus mirabilis HI4320 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|197284094|ref|YP_002149966.1|   5.47e-37   0.00000949   381-510   2io8 A:379-496  
 
Weak hits:
gi|197286197|ref|YP_002152069.1|   3.74e-38   0.023   174-279   2io8 A:379-496  

Edwardsiella ictaluri 93-146 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|238920872|ref|YP_002934387.1|   8.06e-37   0.00000601   380-510   2io8 A:379-496  
 
Weak hits:
gi|238918255|ref|YP_002931769.1|   1.38e-41   0.014   174-279   2io8 A:379-496  

Edwardsiella tarda EIB202 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|269140035|ref|YP_003296736.1|   1.41e-36   0.00000566   192-322   2io8 A:379-496  
 
Weak hits:
gi|269137643|ref|YP_003294343.1|   1.38e-41   0.014   174-279   2io8 A:379-496  

Escherichia blattae DSM 4481 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|387889127|ref|YP_006319425.1|   8.92e-37   0.00000717   380-512   2io8 A:379-496  
 
Weak hits:
gi|387887888|ref|YP_006318186.1|   9.78e-41   0.02   174-279   2io8 A:379-496  

Enterobacteriaceae bacterium strain FGI 57 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|440286166|ref|YP_007338931.1|   4.32e-38   0.00000379   378-508   2io8 A:379-496  
 
Weak hits:
gi|440286122|ref|YP_007338887.1|   2.85e-39   0.023   174-279   2io8 A:379-496  

Shigella sonnei Ss046 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|74313533|ref|YP_311952.1|   5.97e-39   0.000000835   380-510   2io8 A:379-496  
 
Weak hits:
gi|74313575|ref|YP_311994.1|   3.16e-39   0.022   174-279   2io8 A:379-496  
gi|74314667|ref|YP_313086.1|   5.47e-37   0.016   171-277   2io8 A:379-496  

Shigella flexneri 5 str. 8401 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|110806891|ref|YP_690411.1|   2.65e-39   0.00000118   381-511   2io8 A:379-496  
 
Weak hits:
gi|110806930|ref|YP_690450.1|   4.6e-39   0.02   174-279   2io8 A:379-496  

Shigella dysenteriae Sd197 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|82778243|ref|YP_404592.1|   5.97e-39   0.000000835   380-510   2io8 A:379-496  
 
Weak hits:
gi|82778353|ref|YP_404702.1|   3.16e-39   0.022   174-279   2io8 A:379-496  
gi|82779432|ref|YP_405781.1|   2.53e-37   0.013   171-277   2io8 A:379-496  

Shigella boydii CDC 3083-94 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|187733529|ref|YP_001881751.1|   5.97e-39   0.000000835   380-510   2io8 A:379-496  
 
Weak hits:
gi|187732038|ref|YP_001881804.1|   3.16e-39   0.022   174-279   2io8 A:379-496  
gi|187732408|ref|YP_001882875.1|   4.89e-36   0.018   136-242   2io8 A:379-496  

Salmonella bongori NCTC 12419 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|340000668|ref|YP_004731552.1|   1.99e-38   0.00000263   380-510   2io8 A:379-496  
 
Weak hits:
gi|340000710|ref|YP_004731594.1|   4.03e-39   0.03   174-279   2io8 A:379-496  
gi|340001720|ref|YP_004732604.1|   1.15e-37   0.012   171-276   2io8 A:379-496  

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|224584935|ref|YP_002638734.1|   8.34e-38   0.00000322   379-509   2io8 A:379-496  
 
Weak hits:
gi|224584989|ref|YP_002638788.1|   4.89e-39   0.025   174-279   2io8 A:379-496  
gi|224586215|ref|YP_002640014.1|   4.03e-38   0.013   171-277   2io8 A:379-496  

Klebsiella oxytoca E718 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|397659985|ref|YP_006500687.1|   1.06e-36   0.0000039   380-510   2io8 A:379-496  
 
Weak hits:
gi|397660017|ref|YP_006500719.1|   9.21e-41   0.02   174-279   2io8 A:379-496  

Klebsiella variicola At-22 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|288933558|ref|YP_003437617.1|   4.03e-36   0.00000414   380-510   2io8 A:379-496  
 
Weak hits:
gi|288933528|ref|YP_003437587.1|   1.41e-41   0.019   174-279   2io8 A:379-496  

Klebsiella pneumoniae NTUH-K2044 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|238896510|ref|YP_002921248.1|   1.55e-36   0.00000379   380-510   2io8 A:379-496  
 
Weak hits:
gi|238896545|ref|YP_002921285.1|   2.5e-41   0.02   174-279   2io8 A:379-496  

Enterobacter aerogenes KCTC 2190 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|336247194|ref|YP_004590904.1|   3.45e-36   0.00000373   380-510   2io8 A:379-496  
 
Weak hits:
gi|336247223|ref|YP_004590933.1|   2.3e-41   0.02   174-279   2io8 A:379-496  

Escherichia fergusonii ATCC 35469 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|218550238|ref|YP_002384029.1|   3.16e-39   0.00000207   380-510   2io8 A:379-496  
 
Weak hits:
gi|218550287|ref|YP_002384078.1|   1.5e-39   0.025   174-279   2io8 A:379-496  
gi|218551456|ref|YP_002385248.1|   2.88e-37   0.016   171-277   2io8 A:379-496  

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Showing genomes 1 to 25 of 165

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View all assignments containing a Glutathionylspermidine synthase substrate-binding domain-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   21126 21126
No Yes Rhodospirillum rubrum F11   1 1
No Yes Aggregatibacter aphrophilus NJ8700   1 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   1 1
No Yes Haemophilus parainfluenzae T3T1   1 1
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Edwardsiella tarda EIB202   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Mannheimia succiniciproducens MBEL55E   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Aggregatibacter actinomycetemcomitans D11S-1   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Edwardsiella tarda C07-087   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   6 6
No Yes Combined (meta-genome)   7 7
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   10 10
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   13 13
No Yes NCBI 2017_08 genome   19884 19884
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   68 68
No Yes Uniprot 2018_03 genome   842 842
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   12 12
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   22 22
No Yes TargetDB (Targets)   8 8
No Yes The Salmonella enterica Pan-genome (meta-genome)   30 30

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.