SUPERFAMILY 1.75 HMM library and genome assignments server

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AstE/AspA-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1yw4A   3.63e-75   0.0000000000156   7-326   1yw4 A:2-332  
1yw6A   3.63e-92   0.0000000000112   6-324   1yw6 A:1-322  
2bcoA   7.42e-77   0.0000000000149   9-329   2bco A:4-342  
2g9dA   2.82e-79   0.0000000000162   9-329   2g9d A:3-342  
2gu2A   6.52e-91   0.0000000119   7-305   2gu2 A:4-310  
2i3cA   5.18e-92   0.0000000136   12-309   2i3c A:9-310  

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Select to display   Genome       Domains   Proteins
No Yes ALL   42889 42889
No Yes Homo sapiens 76_38 Human 5 5
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 76_3 Small-eared galago 2 2
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 6 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 3 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 3 3
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 3 3
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Gadus morhua 76_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 4 4
No Yes Takifugu rubripes 76_4 Torafugu 7 7
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 6 6
No Yes Oryzias latipes 76_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Poecilia formosa 76 Amazon molly 6 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 4 4
No Yes Astyanax mexicanus 76 Mexican tetra 3 3
No Yes Danio rerio 76_9 Zebrafish 7 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Capitella sp. I   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Symbiodinium minutum clade B1 v1.2   3 3
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   3 3
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Rivularia sp. PCC 7116   2 2
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   2 2
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Aeromonas veronii B565   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio furnissii NCTC 11218   2 2
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Photobacterium profundum SS9   2 2
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Ferrimonas balearica DSM 9799   2 2
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella loihica PV-4   1 1
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Glaciecola nitratireducens FR1064   2 2
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   2 2
No Yes Alteromonas macleodii str. 'Deep ecotype'   2 2
No Yes Kangiella koreensis DSM 16069   2 2
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   2 2
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Halomonas elongata DSM 2581   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Dickeya dadantii Ech703   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ES15   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   2 2
No Yes Klebsiella pneumoniae NTUH-K2044   2 2
No Yes Enterobacter aerogenes KCTC 2190   2 2
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   1 1
No Yes Francisella sp. TX077308   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 7 7
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   2 2
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   2 2
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella sp. MR-7   1 1
No Yes Shewanella putrefaciens 200   1 1
No Yes Glaciecola psychrophila 170   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   2 2
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   2 2
No Yes Alteromonas macleodii AltDE1   2 2
No Yes Alteromonas macleodii str. 'English Channel 673'   2 2
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   2 2
No Yes Alteromonas macleodii str. 'Black Sea 11'   2 2
No Yes Alteromonas macleodii ATCC 27126   2 2
No Yes Rahnella aquatilis HX2   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Raoultella ornithinolytica B6   2 2
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   2 2
No Yes Klebsiella pneumoniae CG43   2 2
No Yes Klebsiella pneumoniae KCTC 2242   2 2
No Yes Klebsiella pneumoniae 342   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   2 2
No Yes Enterobacter aerogenes EA1509E   2 2
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii D1279779   2 2
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii SDF   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 5 5
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 3 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 3 2
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 3 3
No Yes Gadus morhua 69_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 4 4
No Yes Takifugu rubripes 69_4 Torafugu 3 3
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 69_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 3 3
No Yes Danio rerio 69_9 Zebrafish 4 3
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   11 11
No Yes Combined (meta-genome)   16 16
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   14 14
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   9 9
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   26 26
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   26 26
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica), fosmids (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   7 7
No Yes NCBI 2017_08 genome   36890 36888
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   262 261
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   4164 4164
No Yes Global Ocean Sampling Expedition (GOS)   62 62
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   112 112
No Yes TargetDB (Targets)   29 29
No Yes The Salmonella enterica Pan-genome (meta-genome)   31 31

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