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  Home > Genomes > NlpC/P60 domains in all bacterial genomes


NlpC/P60 family domain assignments
in
all bacterial genomes

Assignment details

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25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 64
  1 2 3   Next Last

Leptolyngbya sp. PCC 7376 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427722051|ref|YP_007069328.1|   9.32e-37   0.0000144   98-222   2evr A:87-234  

Pseudanabaena sp. PCC 7367 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|428218048|ref|YP_007102513.1|   7.85e-33   0.000013   95-229   2evr A:87-234  

Acaryochloris marina MBIC11017 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|158337831|ref|YP_001519007.1|   4.27e-31   0.0000082   101-246   2evr A:87-234  

Synechocystis sp. PCC 6803 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|16330841|ref|NP_441569.1|   4.25e-31   0.0000123   96-248   2evr A:87-234  

Thermosynechococcus sp. NK55 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|571028200|ref|YP_008900320.1|   7.36e-32   0.00000813   102-229   2evr A:87-234  

Thermosynechococcus elongatus BP-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|22299732|ref|NP_682979.1|   1.52e-32   0.0000081   89-229   2evr A:87-234  

Synechococcus sp. PCC 7502 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|428220390|ref|YP_007104560.1|   9.32e-37   0.0000113   92-209   2evr A:87-234  

Synechococcus sp. PCC 6312 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427713710|ref|YP_007062334.1|   3.04e-27   0.00000923   116-243   2evr A:87-234  

Synechococcus sp. CC9311 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|113953742|ref|YP_729633.1|   3.53e-28   0.0000177   114-239   2evr A:87-234  

Synechococcus elongatus PCC 7942 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|81299636|ref|YP_399844.1|   3.09e-33   0.000016   83-219   2evr A:87-234  

Prochlorococcus marinus str. MIT 9515 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|123966931|ref|YP_001012012.1|   3.92e-30   0.0000229   118-244   2evr A:87-234  

Microcoleus sp. PCC 7113 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|428311559|ref|YP_007122536.1|   2.35e-33   0.0000107   92-223   2evr A:87-234  

Geitlerinema sp. PCC 7407 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|428223523|ref|YP_007107620.1|   5.4e-34   0.00000867   107-235   2evr A:87-234  

Cyanothece sp. PCC 8802 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|257061241|ref|YP_003139129.1|   2.06e-35   0.0000073   99-225   2evr A:87-234  

Gloeocapsa sp. PCC 7428 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|434392677|ref|YP_007127624.1|   1.08e-33   0.00000219   97-219   2evr A:87-234  

Microcystis aeruginosa NIES-843 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|166365077|ref|YP_001657350.1|   2.55e-37   0.0000155   97-223   2evr A:87-234  

Rivularia sp. PCC 7116 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427737608|ref|YP_007057152.1|   4.25e-34   0.00000573   93-230   2evr A:87-234  
 
Weak hits:
gi|427735377|ref|YP_007054921.1|   0.0000000000523   0.027   63-192   2evr A:87-234  

Calothrix sp. PCC 7507 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427718870|ref|YP_007066864.1|   4.41e-36   0.00000131   111-228   2evr A:87-234  

Anabaena variabilis ATCC 29413 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|75909602|ref|YP_323898.1|   2.94e-35   0.00000104   109-230   2evr A:87-234  

'Nostoc azollae' 0708 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|298491482|ref|YP_003721659.1|   2.84e-37   0.00000179   102-219   2evr A:87-234  

Nostoc sp. PCC 7107 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427709464|ref|YP_007051841.1|   2.31e-35   0.00000206   97-229   2evr A:87-234  

Nostoc punctiforme PCC 73102 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|186681160|ref|YP_001864356.1|   6.87e-35   0.000000324   117-238   2evr A:87-234  

Nostoc sp. PCC 7120 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|17230871|ref|NP_487419.1|   9.32e-36   0.00000119   109-230   2evr A:87-234  

Nostoc sp. PCC 7524 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427729458|ref|YP_007075695.1|   2.21e-34   0.00000121   108-227   2evr A:87-234  

Anabaena sp. 90 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|414078559|ref|YP_006997877.1|   1.67e-38   0.00000195   95-221   2evr A:87-234  

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Showing genomes 1 to 25 of 64

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Select to display   Genome       Domains   Proteins
No Yes ALL   903 903
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes NCBI 2017_08 genome   331 331
No Yes STRING v9.0.5 (STRING)   33 33
No Yes Uniprot 2018_03 genome   308 308
No Yes Global Ocean Sampling Expedition (GOS)   76 76
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   12 12
No Yes TargetDB (Targets)   3 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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