SUPERFAMILY 1.75 HMM library and genome assignments server

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Rv2632c-like superfamily domain assignments
in
Pinus taeda


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Select to display   Genome       Domains   Proteins
No Yes ALL   14259 14259
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Kitasatospora setae KM-6054   3 3
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   3 3
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Nocardioides sp. JS614   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   3 3
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium canettii CIPT 140010059   2 2
No Yes Mycobacterium africanum GM041182   2 2
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   2 2
No Yes Mycobacterium rhodesiae NBB3   2 2
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces collinus Tu 365   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   3 3
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   2 2
No Yes Mycobacterium canettii CIPT 140070008   2 2
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis CAS/NITR204   2 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis UT205   2 2
No Yes Mycobacterium tuberculosis RGTB423   2 2
No Yes Mycobacterium tuberculosis RGTB327   2 2
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 2
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5180   1 1
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   2 2
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   2 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   2 2
No Yes Mycobacterium bovis BCG str. Mexico   2 2
No Yes Mycobacterium bovis BCG str. Tokyo 172   2 2
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes NCBI 2017_08 genome   12828 12827
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   38 38
No Yes Uniprot 2018_03 genome   1191 1191
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   3 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4 4
No Yes TargetDB (Targets)   5 5

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