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Transposase IS200-like superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   135393 135393
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Phytophthora capsici   1 1
No Yes Leptolyngbya sp. PCC 7376   2 2
No Yes Pseudanabaena sp. PCC 7367   2 2
No Yes Acaryochloris marina MBIC11017   6 6
No Yes Thermosynechococcus elongatus BP-1   12 12
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   3 3
No Yes Microcoleus sp. PCC 7113   3 3
No Yes Trichodesmium erythraeum IMS101   5 5
No Yes Geitlerinema sp. PCC 7407   5 5
No Yes Cyanothece sp. PCC 8802   8 8
No Yes Gloeocapsa sp. PCC 7428   3 3
No Yes Halothece sp. PCC 7418   7 7
No Yes Microcystis aeruginosa NIES-843   14 14
No Yes Rivularia sp. PCC 7116   17 17
No Yes Calothrix sp. PCC 7507   11 11
No Yes Anabaena variabilis ATCC 29413   4 4
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   6 6
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   11 11
No Yes Nostoc sp. PCC 7524   9 9
No Yes Anabaena sp. 90   10 10
No Yes Slackia heliotrinireducens DSM 20476   3 3
No Yes Ilumatobacter coccineus   5 5
No Yes Frankia sp. EAN1pec   8 8
No Yes Thermobifida fusca YX   2 2
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   3 3
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Rhodococcus jostii RHA1   2 2
No Yes Rhodococcus opacus B4   1 1
No Yes Mycobacterium avium 104   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium gilvum PYR-GCK   2 2
No Yes Mycobacterium marinum M   1 1
No Yes Renibacterium salmoninarum ATCC 33209   2 2
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   2 2
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Roseiflexus sp. RS-1   4 4
No Yes Roseiflexus castenholzii DSM 13941   4 4
No Yes Chloroflexus sp. MS-G   3 3
No Yes Chloroflexus sp. Y-400-fl   2 2
No Yes Chloroflexus aggregans DSM 9485   15 15
No Yes Chloroflexus aurantiacus J-10-fl   2 2
No Yes Truepera radiovictrix DSM 17093   11 11
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus radiodurans R1   9 9
No Yes Oceanithermus profundus DSM 14977   2 2
No Yes Meiothermus silvanus DSM 9946   3 3
No Yes Meiothermus ruber DSM 1279   2 2
No Yes Finegoldia magna ATCC 29328   3 3
No Yes Megasphaera elsdenii DSM 20460   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Acidaminococcus fermentans DSM 20731   1 1
No Yes Megamonas hypermegale   2 2
No Yes Selenomonas sputigena ATCC 35185   6 6
No Yes Natranaerobius thermophilus JW/NM-WN-LF   2 2
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   2 2
No Yes Clostridium clariflavum DSM 19732   10 10
No Yes Eubacterium siraeum   1 1
No Yes Clostridium cellulolyticum H10   10 10
No Yes Clostridium thermocellum ATCC 27405   2 2
No Yes Ethanoligenens harbinense YUAN-3   4 4
No Yes Faecalibacterium prausnitzii   1 1
No Yes Ruminococcus sp.   1 1
No Yes Ruminococcus bromii   1 1
No Yes Ruminococcus albus 7   5 5
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes butyrate-producing bacterium SS3/4   3 3
No Yes Candidatus Desulforudis audaxviator MP104C   4 4
No Yes Pelotomaculum thermopropionicum SI   4 4
No Yes Desulfosporosinus acidiphilus SJ4   1 1
No Yes Dehalobacter sp. CF   1 1
No Yes Desulfitobacterium hafniense Y51   4 4
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   14 14
No Yes Desulfotomaculum kuznetsovii DSM 6115   1 1
No Yes Desulfotomaculum carboxydivorans CO-1-SRB   1 1
No Yes Desulfotomaculum ruminis DSM 2154   2 2
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium eligens ATCC 27750   3 3
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium difficile 630   4 4
No Yes Filifactor alocis ATCC 35896   9 9
No Yes Clostridium saccharolyticum WM1   5 5
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Roseburia hominis A2-183   7 7
No Yes Roseburia intestinalis   2 2
No Yes Butyrivibrio proteoclasticus B316   9 9
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   6 6
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Alkaliphilus metalliredigens QYMF   15 15
No Yes Clostridium kluyveri DSM 555   2 2
No Yes Clostridium tetani E88   8 8
No Yes Clostridium cellulovorans 743B   13 13
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Caldicellulosiruptor obsidiansis OB47   3 3
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   4 4
No Yes Caldicellulosiruptor kristjanssonii 177R1B   2 2
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   2 2
No Yes Caldicellulosiruptor bescii DSM 6725   4 4
No Yes Thermoanaerobacterium xylanolyticum LX-11   6 6
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   2 2
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Carboxydothermus hydrogenoformans Z-2901   2 2
No Yes Ammonifex degensii KC4   4 4
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   2 2
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Acetohalobium arabaticum DSM 5501   4 4
No Yes Halanaerobium hydrogeniformans   3 3
No Yes Halanaerobium praevalens DSM 2228   6 6
No Yes Tetragenococcus halophilus NBRC 12172   7 7
No Yes Enterococcus faecium Aus0004   1 1
No Yes Enterococcus faecalis 62   1 1
No Yes Leuconostoc sp. C2   1 1
No Yes Leuconostoc kimchii IMSNU 11154   1 1
No Yes Lactobacillus kefiranofaciens ZW3   3 3
No Yes Lactobacillus johnsonii FI9785   1 1
No Yes Lactobacillus sanfranciscensis TMW 1.1304   9 9
No Yes Lactobacillus ruminis ATCC 27782   6 6
No Yes Lactobacillus fermentum IFO 3956   10 10
No Yes Lactobacillus amylovorus GRL1118   6 6
No Yes Lactobacillus reuteri DSM 20016   19 19
No Yes Lactobacillus acidophilus 30SC   3 3
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus pasteurianus ATCC 43144   1 1
No Yes Streptococcus equi subsp. equi 4047   2 2
No Yes Streptococcus mitis B6   4 4
No Yes Streptococcus parauberis KCTC 11537   2 2
No Yes Streptococcus parasanguinis ATCC 15912   2 2
No Yes Streptococcus mutans NN2025   1 1
No Yes Streptococcus thermophilus LMD-9   2 2
No Yes Streptococcus suis P1/7   2 2
No Yes Streptococcus salivarius 57.I   11 11
No Yes Exiguobacterium sibiricum 255-15   3 3
No Yes Kyrpidia tusciae DSM 2912   2 2
No Yes Brevibacillus brevis NBRC 100599   3 3
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Bacillus selenitireducens MLS10   1 1
No Yes Oceanobacillus iheyensis HTE831   2 2
No Yes Geobacillus thermoleovorans CCB_US3_UF5   3 3
No Yes Geobacillus kaustophilus HTA426   3 3
No Yes Geobacillus sp. GHH01   2 2
No Yes Geobacillus sp. WCH70   8 8
No Yes Geobacillus thermodenitrificans NG80-2   1 1
No Yes Halobacillus halophilus DSM 2266   2 2
No Yes Bacillus sp. 1NLA3E   2 2
No Yes Bacillus halodurans C-125   8 8
No Yes Bacillus pseudofirmus OF4   4 4
No Yes Bacillus clausii KSM-K16   4 4
No Yes Bacillus cellulosilyticus DSM 2522   3 3
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus haemolyticus JCSC1435   2 2
No Yes Staphylococcus epidermidis RP62A   3 3
No Yes Candidatus Cloacamonas acidaminovorans   3 3
No Yes Melioribacter roseus P3M   2 2
No Yes Ignavibacterium album JCM 16511   9 9
No Yes Pelodictyon phaeoclathratiforme BU-1   6 6
No Yes Chlorobium chlorochromatii CaD3   9 9
No Yes Chlorobium phaeobacteroides DSM 266   20 20
No Yes Chlorobium phaeovibrioides DSM 265   2 2
No Yes Chlorobium limicola DSM 245   7 7
No Yes Chlorobaculum parvum NCIB 8327   3 3
No Yes Prosthecochloris aestuarii DSM 271   6 6
No Yes Haliscomenobacter hydrossis DSM 1100   8 8
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   3 3
No Yes Salinibacter ruber M8   2 2
No Yes Rhodothermus marinus DSM 4252   2 2
No Yes Flexibacter litoralis DSM 6794   18 18
No Yes Candidatus Amoebophilus asiaticus 5a2   8 8
No Yes Belliella baltica DSM 15883   3 3
No Yes Cyclobacterium marinum DSM 745   6 6
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Fibrella aestuarina   1 1
No Yes Leadbetterella byssophila DSM 17132   2 2
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   14 14
No Yes Spirosoma linguale DSM 74   10 10
No Yes Runella slithyformis DSM 19594   9 9
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Paludibacter propionicigenes WB4   7 7
No Yes Odoribacter splanchnicus DSM 20712   1 1
No Yes Bacteroides sp. CF50   2 2
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella ruminicola 23   3 3
No Yes Porphyromonas asaccharolytica DSM 20707   2 2
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Pedobacter saltans DSM 12145   3 3
No Yes Solitalea canadensis DSM 3403   3 3
No Yes Fluviicola taffensis DSM 16823   4 4
No Yes Owenweeksia hongkongensis DSM 17368   3 3
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Gramella forsetii KT0803   1 1
No Yes Aequorivita sublithincola DSM 14238   3 3
No Yes Zobellia galactanivorans   3 3
No Yes Cellulophaga algicola DSM 14237   5 5
No Yes Flavobacteriaceae bacterium 3519-10   2 2
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   6 6
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Flavobacterium johnsoniae UW101   6 6
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Phycisphaera mikurensis NBRC 102666   17 17
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Planctomyces brasiliensis DSM 5305   7 7
No Yes Planctomyces limnophilus DSM 3776   7 7
No Yes Rhodopirellula baltica SH 1   11 11
No Yes Pirellula staleyi DSM 6068   3 3
No Yes Coraliomargarita akajimensis DSM 45221   4 4
No Yes Opitutus terrae PB90-1   4 4
No Yes Akkermansia muciniphila ATCC BAA-835   2 2
No Yes Thermovirga lienii DSM 17291   1 1
No Yes Aminobacterium colombiense DSM 12261   1 1
No Yes Anaerobaculum mobile DSM 13181   1 1
No Yes Turneriella parva DSM 21527   5 5
No Yes Borrelia recurrentis A1   1 1
No Yes Borrelia duttonii Ly   1 1
No Yes Borrelia crocidurae str. Achema   2 2
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Treponema primitia ZAS-2   3 3
No Yes Thermodesulfatator indicus DSM 15286   17 17
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Desulfurispirillum indicum S5   3 3
No Yes Calditerrivibrio nitroreducens DSM 19672   2 2
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Deferribacter desulfuricans SSM1   17 17
No Yes Flexistipes sinusarabici DSM 4947   3 3
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Kosmotoga olearia TBF 19.5.1   2 2
No Yes Thermosipho africanus TCF52B   3 3
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga sp. RQ2   3 3
No Yes Thermotoga naphthophila RKU-10   4 4
No Yes Thermotoga petrophila RKU-1   2 2
No Yes Thermotoga maritima MSB8   3 3
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Thermocrinis albus DSM 14484   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Elusimicrobium minutum Pei191   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   5 5
No Yes Candidatus Solibacter usitatus Ellin6076   4 4
No Yes Granulicella tundricola MP5ACTX9   3 3
No Yes Granulicella mallensis MP5ACTX8   4 4
No Yes Candidatus Koribacter versatilis Ellin345   4 4
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   5 5
No Yes Acidobacterium capsulatum ATCC 51196   3 3
No Yes Candidatus Nitrospira defluvii   2 2
No Yes Leptospirillum ferrooxidans C2-3   6 6
No Yes Streptobacillus moniliformis DSM 12112   1 1
No Yes Sebaldella termitidis ATCC 33386   2 2
No Yes Leptotrichia buccalis C-1013-b   3 3
No Yes Ilyobacter polytropus DSM 2926   2 2
No Yes Fusobacterium nucleatum subsp. nucleatum ATCC 25586   2 2
No Yes Candidatus Methylomirabilis oxyfera   2 2
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   2 2
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Bdellovibrio bacteriovorus HD100   4 4
No Yes Nautilia profundicola AmH   1 1
No Yes Nitratifractor salsuginis DSM 16511   9 9
No Yes Sulfurospirillum deleyianum DSM 6946   1 1
No Yes Sulfurospirillum barnesii SES-3   2 2
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   2 2
No Yes Sulfuricurvum kujiense DSM 16994   3 3
No Yes Sulfurimonas autotrophica DSM 16294   1 1
No Yes Sulfurimonas denitrificans DSM 1251   5 5
No Yes Helicobacter bizzozeronii CIII-1   2 2
No Yes Helicobacter acinonychis str. Sheeba   4 4
No Yes Sulfurovum sp. NBC37-1   11 11
No Yes Desulfobacca acetoxidans DSM 11109   5 5
No Yes Desulfomonile tiedjei DSM 6799   6 6
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfurivibrio alkaliphilus AHT2   2 2
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   6 6
No Yes Desulfatibacillum alkenivorans AK-01   17 17
No Yes Desulfobacterium autotrophicum HRM2   3 3
No Yes Desulfococcus oleovorans Hxd3   5 5
No Yes Desulfohalobium retbaense DSM 5692   3 3
No Yes Desulfomicrobium baculatum DSM 4028   3 3
No Yes Desulfovibrio piezophilus   4 4
No Yes Desulfovibrio magneticus RS-1   2 2
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Hippea maritima DSM 10411   4 4
No Yes Geobacter daltonii FRC-32   6 6
No Yes Geobacter sp. M21   3 3
No Yes Geobacter uraniireducens Rf4   19 19
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter bemidjiensis Bem   5 5
No Yes Geobacter sulfurreducens KN400   5 5
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   6 6
No Yes Pelobacter carbinolicus DSM 2380   7 7
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   8 8
No Yes Anaeromyxobacter sp. Fw109-5   4 4
No Yes Anaeromyxobacter dehalogenans 2CP-1   9 9
No Yes Thauera sp. MZ1T   1 1
No Yes Aromatoleum aromaticum EbN1   9 9
No Yes Chromobacterium violaceum ATCC 12472   3 3
No Yes Neisseria meningitidis alpha14   1 1
No Yes Neisseria meningitidis FAM18   3 3
No Yes Neisseria lactamica 020-06   1 1
No Yes Neisseria gonorrhoeae NCCP11945   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   4 4
No Yes beta proteobacterium CB   1 1
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   2 2
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia rhizoxinica HKI 454   2 2
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   12 12
No Yes Ralstonia eutropha H16   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   3 3
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   2 2
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Collimonas fungivorans Ter331   2 2
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella petrii DSM 12804   2 2
No Yes Bordetella avium 197N   1 1
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   2 2
No Yes Bordetella bronchiseptica RB50   2 2
No Yes Achromobacter xylosoxidans   1 1
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Nitrosomonas sp. Is79A3   7 7
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Sideroxydans lithotrophicus ES-1   2 2
No Yes Gallionella capsiferriformans ES-2   1 1
No Yes Methylotenera versatilis 301   2 2
No Yes Methylobacillus flagellatus KT   1 1
No Yes Magnetococcus marinus MC-1   2 2
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Roseobacter litoralis Och 149   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Rickettsia canadensis str. McKiel   7 7
No Yes Rickettsia massiliae MTU5   11 11
No Yes Rickettsia australis str. Cutlack   21 21
No Yes Rickettsia akari str. Hartford   12 12
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Sinorhizobium fredii NGR234   4 4
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   4 4
No Yes Rhodopseudomonas palustris BisA53   2 2
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Methylocystis sp. SC2   1 1
No Yes Saccharophagus degradans 2-40   10 10
No Yes Teredinibacter turnerae T7901   8 8
No Yes Aggregatibacter aphrophilus NJ8700   2 2
No Yes Haemophilus somnus 129PT   2 2
No Yes Gallibacterium anatis UMN179   5 5
No Yes Haemophilus parasuis SH0165   3 3
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Actinobacillus pleuropneumoniae serovar 5b str. L20   1 1
No Yes Oceanimonas sp. GK1   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Vibrio cholerae O395   7 7
No Yes Photobacterium profundum SS9   28 28
No Yes Psychromonas ingrahamii 37   7 7
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Ferrimonas balearica DSM 9799   6 6
No Yes Shewanella piezotolerans WP3   4 4
No Yes Shewanella halifaxensis HAW-EB4   9 9
No Yes Shewanella sediminis HAW-EB3   4 4
No Yes Shewanella denitrificans OS217   12 12
No Yes Shewanella pealeana ATCC 700345   9 9
No Yes Shewanella oneidensis MR-1   15 15
No Yes Shewanella baltica OS185   6 6
No Yes Shewanella woodyi ATCC 51908   21 21
No Yes Shewanella sp. MR-4   6 6
No Yes Shewanella amazonensis SB2B   10 10
No Yes Shewanella violacea DSS12   17 17
No Yes Shewanella putrefaciens CN-32   4 4
No Yes Colwellia psychrerythraea 34H   3 3
No Yes Pseudoalteromonas sp. SM9913   2 2
No Yes Pseudoalteromonas atlantica T6c   7 7
No Yes Pseudoalteromonas haloplanktis TAC125   10 10
No Yes Glaciecola sp. 4H-3-7+YE-5   17 17
No Yes Glaciecola nitratireducens FR1064   2 2
No Yes Marinobacter sp. BSs20148   2 2
No Yes Marinobacter aquaeolei VT8   2 2
No Yes Alteromonas sp. SN2   4 4
No Yes Alteromonas macleodii str. 'Deep ecotype'   3 3
No Yes Hahella chejuensis KCTC 2396   4 4
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Marinomonas posidonica IVIA-Po-181   2 2
No Yes Marinomonas sp. MWYL1   4 4
No Yes Marinomonas mediterranea MMB-1   5 5
No Yes Methylomicrobium alcaliphilum   7 7
No Yes Methylomonas methanica MC09   14 14
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Dichelobacter nodosus VCS1703A   3 3
No Yes Rhodanobacter denitrificans   5 5
No Yes Pseudoxanthomonas spadix BD-a59   5 5
No Yes Pseudoxanthomonas suwonensis 11-1   3 3
No Yes Stenotrophomonas maltophilia K279a   4 4
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   3 3
No Yes Spiribacter sp. UAH-SP71   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   2 2
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   6 6
No Yes Thioalkalivibrio sp. K90mix   11 11
No Yes Halorhodospira halophila SL1   1 1
No Yes Allochromatium vinosum DSM 180   2 2
No Yes Thiocystis violascens DSM 198   7 7
No Yes Nitrosococcus watsonii C-113   3 3
No Yes Nitrosococcus halophilus Nc4   15 15
No Yes Nitrosococcus oceani ATCC 19707   7 7
No Yes Coxiella burnetii Dugway 5J108-111   2 2
No Yes Legionella pneumophila str. Corby   2 2
No Yes gamma proteobacterium HdN1   3 3
No Yes Photorhabdus asymbiotica   2 2
No Yes Photorhabdus luminescens subsp. laumondii TTO1   8 8
No Yes Xenorhabdus bovienii SS-2004   3 3
No Yes Xenorhabdus nematophila ATCC 19061   10 10
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Proteus mirabilis HI4320   14 14
No Yes Edwardsiella ictaluri 93-146   4 4
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   10 10
No Yes Yersinia pseudotuberculosis IP 31758   15 15
No Yes Yersinia pestis Pestoides F   56 56
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   4 4
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Pectobacterium wasabiae WPP163   3 3
No Yes Pectobacterium sp. SCC3193   2 2
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Escherichia blattae DSM 4481   2 2
No Yes Cronobacter sakazakii ES15   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   3 3
No Yes Salmonella bongori NCTC 12419   3 3
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   4 4
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   4 4
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   3 3
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   3 3
No Yes Pseudomonas entomophila L48   3 3
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 2
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas fulva 12-X   4 4
No Yes Pseudomonas putida F1   3 3
No Yes Pseudomonas fluorescens SBW25   4 4
No Yes Pseudomonas mendocina ymp   2 2
No Yes Pseudomonas sp. VLB120   1 1
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Moraxella catarrhalis RH4   1 1
No Yes Cycloclasticus sp. P1   2 2
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   2 2
No Yes Francisella novicida U112   3 3
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Sulfolobus tokodaii str. 7   7 7
No Yes Sulfolobus solfataricus P2   2 2
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella conradii HZ254   2 2
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta concilii GP6   6 6
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   2 2
No Yes Methanosarcina acetivorans C2A   2 2
No Yes Methanosarcina mazei Go1   14 14
No Yes Methanosarcina barkeri str. Fusaro   20 20
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Pyrococcus yayanosii CH1   2 2
No Yes Thermoplasma volcanium GSS1   3 3
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   9 9
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   2 2
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   2 2
No Yes Halomicrobium mukohataei DSM 12286   3 3
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   3 3
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   2 2
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Halobacterium salinarum R1   4 4
No Yes Halobacterium sp. NRC-1   4 4
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Chroococcidiopsis thermalis PCC 7203   6 6
No Yes Chamaesiphon minutus PCC 6605   4 4
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   18 18
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Prochlorococcus marinus str. MIT 9313   5 5
No Yes Prochlorococcus marinus str. MIT 9303   6 6
No Yes Crinalium epipsammum PCC 9333   9 9
No Yes Oscillatoria nigro-viridis PCC 7112   14 14
No Yes Oscillatoria acuminata PCC 6304   2 2
No Yes Arthrospira platensis NIES-39   11 11
No Yes Cyanothece sp. PCC 7822   5 5
No Yes Cyanothece sp. PCC 7424   15 15
No Yes Cyanothece sp. ATCC 51142   5 5
No Yes Cyanothece sp. PCC 8801   12 12
No Yes Cyanobacterium aponinum PCC 10605   11 11
No Yes Cyanobacterium stanieri PCC 7202   4 4
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   2 2
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   8 8
No Yes Stanieria cyanosphaera PCC 7437   15 15
No Yes Calothrix parietina Calothrix sp. PCC 6303   3 3
No Yes Cylindrospermum stagnale PCC 7417   6 6
No Yes Anabaena cylindrica PCC 7122   7 7
No Yes Gordonibacter pamelaeae 7-10-1-b   2 2
No Yes Frankia sp. CcI3   3 3
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   3 3
No Yes Actinoplanes friuliensis DSM 7358   2 2
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium canettii CIPT 140070017   1 1
No Yes Mycobacterium tuberculosis EAI5/NITR206   1 1
No Yes Mycobacterium tuberculosis CAS/NITR204   1 1
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   1 1
No Yes Mycobacterium tuberculosis RGTB423   1 1
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   1 1
No Yes Mycobacterium tuberculosis CDC1551   1 1
No Yes Mycobacterium bovis BCG str. Korea 1168P   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   2 2
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   2 2
No Yes Clostridium thermocellum DSM 1313   11 11
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Clostridium acidurici 9a   3 3
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Desulfitobacterium hafniense DCB-2   3 3
No Yes Desulfotomaculum gibsoniae DSM 7213   14 14
No Yes Clostridium difficile BI1   8 8
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   2 2
No Yes Coprococcus catus GD/7   2 2
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium autoethanogenum DSM 10061   2 2
No Yes Clostridium kluyveri NBRC 12016   2 2
No Yes Clostridium tetani genome 12124569   4 4
No Yes Clostridium perfringens SM101   14 14
No Yes Clostridium perfringens str. 13   3 3
No Yes Clostridium pasteurianum BC1   2 2
No Yes Clostridium botulinum Ba4 str. 657   3 3
No Yes Clostridium botulinum A3 str. Loch Maree   2 2
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   6 6
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Thermacetogenium phaeum DSM 12270   3 3
No Yes Enterococcus mundtii QU 25   2 2
No Yes Enterococcus faecium Aus0085   5 5
No Yes Enterococcus faecium NRRL B-2354   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis str. Symbioflor 1   2 2
No Yes Enterococcus faecalis V583   1 1
No Yes Lactobacillus johnsonii N6.2   2 2
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus salivarius UCC118   3 3
No Yes Lactobacillus fermentum F-6   42 42
No Yes Lactobacillus amylovorus GRL 1112   5 5
No Yes Lactobacillus reuteri TD1   3 3
No Yes Lactobacillus reuteri I5007   7 7
No Yes Lactobacillus reuteri JCM 1112   19 19
No Yes Lactobacillus reuteri SD2112   18 18
No Yes Lactobacillus helveticus H10   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   3 3
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   8 8
No Yes Streptococcus equi subsp. zooepidemicus MGCS10565   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   1 1
No Yes Streptococcus iniae SF1   5 5
No Yes Streptococcus parasanguinis FW213   4 4
No Yes Streptococcus pyogenes MGAS1882   1 1
No Yes Streptococcus pyogenes MGAS15252   1 1
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae SPNA45   1 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae AP200   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus pneumoniae TIGR4   2 2
No Yes Streptococcus mutans GS-5   4 4
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus mutans UA159   2 2
No Yes Streptococcus thermophilus JIM 8232   3 3
No Yes Streptococcus thermophilus CNRZ1066   3 3
No Yes Streptococcus thermophilus LMG 18311   2 2
No Yes Streptococcus suis T15   2 2
No Yes Streptococcus suis TL13   2 2
No Yes Streptococcus suis SC070731   4 4
No Yes Streptococcus suis S735   4 4
No Yes Streptococcus suis ST3   2 2
No Yes Streptococcus suis D9   3 3
No Yes Streptococcus suis SS12   5 5
No Yes Streptococcus suis D12   6 6
No Yes Streptococcus suis ST1   41 41
No Yes Streptococcus suis A7   5 5
No Yes Streptococcus suis JS14   5 5
No Yes Streptococcus suis BM407   2 2
No Yes Streptococcus suis SC84   2 2
No Yes Streptococcus suis GZ1   5 5
No Yes Streptococcus suis 98HAH33   4 4
No Yes Streptococcus suis 05ZYH33   4 4
No Yes Streptococcus salivarius CCHSS3   19 19
No Yes Streptococcus salivarius JIM8777   3 3
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   4 4
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Geobacillus sp. C56-T3   1 1
No Yes Amphibacillus xylanus NBRC 15112   1 1
No Yes Bacillus infantis NRRL B-14911   2 2
No Yes Bacillus thuringiensis serovar chinensis CT-43   3 3
No Yes Bacillus thuringiensis YBT-1518   11 11
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   2 2
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   6 6
No Yes Bacillus cereus FRI-35   2 2
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   2 2
No Yes Bacillus cereus ATCC 14579   5 5
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus megaterium WSH-002   1 1
No Yes Staphylococcus pasteuri SP1   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus epidermidis ATCC 12228   4 4
No Yes Staphylococcus aureus Bmb9393   5 5
No Yes Staphylococcus aureus M1   4 4
No Yes Staphylococcus aureus subsp. aureus Z172   4 4
No Yes Staphylococcus aureus subsp. aureus 6850   7 7
No Yes Staphylococcus aureus subsp. aureus SA957   7 7
No Yes Staphylococcus aureus subsp. aureus CN1   1 1
No Yes Staphylococcus aureus subsp. aureus SA40   7 7
No Yes Staphylococcus aureus subsp. aureus 11819-97   2 2
No Yes Staphylococcus aureus subsp. aureus M013   7 7
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   6 6
No Yes Staphylococcus aureus subsp. aureus VC40   2 2
No Yes Staphylococcus aureus subsp. aureus T0131   2 2
No Yes Staphylococcus aureus subsp. aureus TW20   4 4
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   2 2
No Yes Staphylococcus aureus subsp. aureus str. Newman   2 2
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   2 2
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   2 2
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   1 1
No Yes Chlorobium phaeobacteroides BS1   7 7
No Yes Salinibacter ruber DSM 13855   2 2
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Echinicola vietnamensis DSM 17526   4 4
No Yes Emticicia oligotrophica DSM 17448   11 11
No Yes Bacteroides xylanisolvens XB1A   2 2
No Yes Nonlabens dokdonensis DSW-6   5 5
No Yes Psychroflexus torquis ATCC 700755   9 9
No Yes Chlamydia trachomatis J/6276tet1   1 1
No Yes Chlamydia trachomatis RC-J(s)/122   1 1
No Yes Chlamydia trachomatis RC-F(s)/342   1 1
No Yes Chlamydia trachomatis RC-Fs852   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Thermotoga maritima MSB8   3 3
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   7 7
No Yes Fusobacterium nucleatum subsp. animalis 4_8   1 1
No Yes Bdellovibrio exovorus JSS   3 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Helicobacter cetorum MIT 99-5656   23 23
No Yes Helicobacter pylori BM012S   1 1
No Yes Helicobacter pylori BM012A   1 1
No Yes Helicobacter pylori Rif2   7 7
No Yes Helicobacter pylori Rif1   7 7
No Yes Helicobacter pylori HUP-B14   1 1
No Yes Helicobacter pylori PeCan18   2 2
No Yes Helicobacter pylori Shi112   2 2
No Yes Helicobacter pylori ELS37   7 7
No Yes Helicobacter pylori SouthAfrica7   5 5
No Yes Helicobacter pylori 2017   1 1
No Yes Helicobacter pylori 2018   1 1
No Yes Helicobacter pylori 908   1 1
No Yes Helicobacter pylori Cuz20   1 1
No Yes Helicobacter pylori PeCan4   1 1
No Yes Helicobacter pylori v225d   1 1
No Yes Helicobacter pylori 83   1 1
No Yes Helicobacter pylori F32   1 1
No Yes Helicobacter pylori J99   1 1
No Yes Helicobacter pylori 26695   7 7
No Yes Helicobacter pylori 26695   7 7
No Yes Desulfocapsa sulfexigens DSM 10523   3 3
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Geobacter sp. M18   3 3
No Yes Geobacter sulfurreducens PCA   6 6
No Yes Sorangium cellulosum So0157-2   8 8
No Yes Anaeromyxobacter sp. K   7 7
No Yes Anaeromyxobacter dehalogenans 2CP-C   8 8
No Yes Neisseria meningitidis WUE 2594   4 4
No Yes Neisseria meningitidis G2136   4 4
No Yes Neisseria meningitidis M04-240196   2 2
No Yes Neisseria meningitidis M01-240149   4 4
No Yes Neisseria meningitidis NZ-05/33   4 4
No Yes Neisseria meningitidis M01-240355   3 3
No Yes Neisseria meningitidis 8013   4 4
No Yes Neisseria meningitidis 053442   3 3
No Yes Neisseria meningitidis Z2491   2 2
No Yes Neisseria meningitidis H44/76   1 1
No Yes Neisseria meningitidis alpha710   4 4
No Yes Neisseria meningitidis MC58   1 1
No Yes Neisseria gonorrhoeae TCDC-NG08107   2 2
No Yes Neisseria gonorrhoeae FA 1090   1 1
No Yes Burkholderia phenoliruptrix BR3459a   2 2
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   6 6
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   2 2
No Yes Bordetella bronchiseptica MO149   2 2
No Yes Bordetella bronchiseptica 253   2 2
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Nitrosomonas sp. AL212   8 8
No Yes Caulobacter crescentus CB15   1 1
No Yes Octadecabacter antarcticus 307   15 15
No Yes Octadecabacter arcticus 238   39 39
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Rickettsia canadensis str. CA410   3 3
No Yes Sinorhizobium fredii HH103   1 1
No Yes Rhizobium tropici CIAT 899   4 4
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   4 4
No Yes Bradyrhizobium sp. BTAi1   3 3
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Simiduia agarivorans SA1 = DSM 21679   5 5
No Yes Mannheimia succiniciproducens MBEL55E   2 2
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   4 4
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 2
No Yes Haemophilus somnus 2336   4 4
No Yes Mannheimia haemolytica USMARC_2286   7 7
No Yes Mannheimia haemolytica M42548   6 6
No Yes Mannheimia haemolytica D174   2 2
No Yes Mannheimia haemolytica D171   3 3
No Yes Mannheimia haemolytica D153   2 2
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   4 4
No Yes Mannheimia haemolytica USDA-ARS-USMARC-185   5 5
No Yes Pasteurella multocida 36950   7 7
No Yes Pasteurella multocida subsp. multocida str. HN06   2 2
No Yes Haemophilus parasuis ZJ0906   2 2
No Yes Haemophilus influenzae KR494   3 3
No Yes Haemophilus influenzae F3047   1 1
No Yes Haemophilus influenzae 10810   1 1
No Yes Haemophilus influenzae PittGG   2 2
No Yes Haemophilus influenzae 86-028NP   1 1
No Yes Haemophilus influenzae Rd KW20   2 2
No Yes Actinobacillus suis H91-0380   5 5
No Yes Actinobacillus pleuropneumoniae serovar 3 str. JL03   1 1
No Yes Actinobacillus pleuropneumoniae serovar 7 str. AP76   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   9 9
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   5 5
No Yes Vibrio cholerae O395   7 7
No Yes Vibrio cholerae IEC224   4 4
No Yes Vibrio cholerae O1 str. 2010EL-1786   5 5
No Yes Vibrio cholerae MJ-1236   4 4
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   4 4
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella sp. W3-18-1   2 2
No Yes Shewanella sp. ANA-3   3 3
No Yes Shewanella baltica BA175   5 5
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   2 2
No Yes Shewanella baltica OS223   3 3
No Yes Shewanella baltica OS195   4 4
No Yes Shewanella baltica OS155   2 2
No Yes Shewanella sp. MR-7   7 7
No Yes Shewanella putrefaciens 200   3 3
No Yes Glaciecola psychrophila 170   25 25
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   4 4
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   3 3
No Yes Alteromonas macleodii AltDE1   3 3
No Yes Alteromonas macleodii str. 'English Channel 673'   5 5
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   4 4
No Yes Alteromonas macleodii str. 'Black Sea 11'   3 3
No Yes Alteromonas macleodii ATCC 27126   3 3
No Yes Alcanivorax dieselolei B5   6 6
No Yes Thalassolituus oleivorans MIL-1   8 8
No Yes Stenotrophomonas maltophilia D457   4 4
No Yes Stenotrophomonas maltophilia JV3   5 5
No Yes Stenotrophomonas maltophilia R551-3   5 5
No Yes Xanthomonas citri subsp. citri Aw12879   2 2
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   3 3
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   4 4
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Spiribacter salinus M19-40   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   7 7
No Yes Thioflavicoccus mobilis 8321   10 10
No Yes Coxiella burnetii CbuK_Q154   2 2
No Yes Coxiella burnetii CbuG_Q212   2 2
No Yes Legionella pneumophila str. Paris   5 5
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Proteus mirabilis BB2000   9 9
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Edwardsiella tarda C07-087   1 1
No Yes Edwardsiella tarda FL6-60   1 1
No Yes Yersinia pseudotuberculosis PB1/+   2 2
No Yes Yersinia pseudotuberculosis YPIII   14 14
No Yes Yersinia pseudotuberculosis IP 32953   5 5
No Yes Yersinia pestis biovar Microtus str. 91001   48 48
No Yes Yersinia pestis A1122   67 67
No Yes Yersinia pestis Z176003   63 63
No Yes Yersinia pestis D182038   64 64
No Yes Yersinia pestis D106004   59 59
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   61 61
No Yes Yersinia pestis Nepal516   65 65
No Yes Yersinia pestis Antiqua   69 69
No Yes Yersinia pestis Angola   101 101
No Yes Yersinia pestis CO92   66 66
No Yes Yersinia pestis KIM10+   53 53
No Yes Serratia plymuthica S13   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Dickeya dadantii 3937   5 5
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Shigella sonnei 53G   3 3
No Yes Shigella flexneri 2002017   3 3
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   3 3
No Yes Salmonella bongori N268-08   5 5
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   9 9
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   2 2
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   8 8
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   6 6
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   9 9
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   10 10
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   8 8
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   7 7
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   7 7
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   6 6
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   8 8
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   11 11
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   7 7
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   12 12
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   27 27
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   28 28
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   28 28
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   28 28
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   5 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   7 7
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   8 8
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   8 8
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   4 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   4 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   4 4
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   4 4
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Klebsiella oxytoca KCTC 1686   4 4
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   3 3
No Yes Enterobacter aerogenes EA1509E   3 3
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   2 2
No Yes Escherichia coli JJ1886   4 4
No Yes Escherichia coli LY180   3 3
No Yes Escherichia coli APEC O78   3 3
No Yes Escherichia coli O7:K1 str. CE10   2 2
No Yes Escherichia coli O104:H4 str. 2009EL-2050   3 3
No Yes Escherichia coli O104:H4 str. 2009EL-2071   3 3
No Yes Escherichia coli O104:H4 str. 2011C-3493   3 3
No Yes Escherichia coli NA114   2 2
No Yes Escherichia coli P12b   6 6
No Yes Escherichia coli str. 'clone D i2'   2 2
No Yes Escherichia coli str. 'clone D i14'   2 2
No Yes Escherichia coli UM146   2 2
No Yes Escherichia coli 042   3 3
No Yes Escherichia coli Xuzhou21   3 3
No Yes Escherichia coli IHE3034   2 2
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   3 3
No Yes Escherichia coli ABU 83972   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli LF82   3 3
No Yes Escherichia coli ED1a   3 3
No Yes Escherichia coli IAI39   3 3
No Yes Escherichia coli UMN026   7 7
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   2 2
No Yes Escherichia coli IAI1   3 3
No Yes Escherichia coli W   3 3
No Yes Escherichia coli W   3 3
No Yes Escherichia coli DH1   3 3
No Yes Escherichia coli DH1   3 3
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   2 2
No Yes Escherichia coli SE15   2 2
No Yes Escherichia coli APEC O1   3 3
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   2 2
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   3 3
No Yes Escherichia coli O55:H7 str. CB9615   3 3
No Yes Escherichia coli O26:H11 str. 11368   2 2
No Yes Escherichia coli CFT073   20 20
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   8 8
No Yes Escherichia coli O157:H7 str. TW14359   3 3
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   3 3
No Yes Escherichia coli O157:H7 str. EDL933   2 2
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   3 3
No Yes Pseudomonas syringae pv. syringae B728a   3 3
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   4 4
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas monteilii SB3101   2 2
No Yes Pseudomonas monteilii SB3078   2 2
No Yes Pseudomonas putida H8234   4 4
No Yes Pseudomonas putida HB3267   4 4
No Yes Pseudomonas putida NBRC 14164   2 2
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   2 2
No Yes Pseudomonas putida BIRD-1   3 3
No Yes Pseudomonas putida W619   2 2
No Yes Pseudomonas putida ND6   2 2
No Yes Pseudomonas putida KT2440   2 2
No Yes Pseudomonas putida GB-1   3 3
No Yes Pseudomonas poae RE*1-1-14   2 2
No Yes Pseudomonas fluorescens F113   4 4
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   2 2
No Yes Pseudomonas resinovorans NBRC 106553   4 4
No Yes Pseudomonas mendocina NK-01   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Acinetobacter johnsonii SH046   3 3
No Yes Methylophaga sp. JAM7   1 1
No Yes Cycloclasticus zancles 7-ME   3 3
No Yes Francisella cf. novicida Fx1   2 2
No Yes Candidatus Nitrososphaera gargensis Ga9.2   3 3
No Yes Sulfolobus islandicus LAL14/1   4 4
No Yes Sulfolobus islandicus REY15A   7 7
No Yes Sulfolobus islandicus HVE10/4   4 4
No Yes Sulfolobus islandicus L.S.2.15   7 7
No Yes Sulfolobus islandicus M.16.27   2 2
No Yes Sulfolobus islandicus M.14.25   2 2
No Yes Sulfolobus islandicus M.16.4   4 4
No Yes Sulfolobus islandicus L.D.8.5   6 6
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Methanomethylovorans hollandica DSM 15978   3 3
No Yes Methanolobus psychrophilus R15   2 2
No Yes Methanosarcina mazei Tuc01   3 3
No Yes Archaeoglobus sulfaticallidus PM70-1   3 3
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronobacterium gregoryi SP2   2 2
No Yes Halorhabdus tiamatea SARL4B   4 4
No Yes Natronomonas moolapensis 8.8.11   4 4
No Yes Haloarcula hispanica N601   1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   13 13
No Yes 4_050719Q (meta-genome)   40 40
No Yes 4_Deep_abyss (meta-genome)   6 6
No Yes 5_050719P (meta-genome)   43 43
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   8 8
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   3 3
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   5 5
No Yes Bath Hot Springs, filamentous community (meta-genome)   2 2
No Yes Combined (meta-genome)   34 34
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   32 32
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   9 9
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   6 6
No Yes Dump bottom (Dump bottom) (meta-genome)   63 63
No Yes Dump top (Dump top) (meta-genome)   60 60
No Yes Endophytic microbiome from Rice (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   31 31
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   11 11
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   13 13
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   35 35
No Yes Fungus garden combined (combined) (meta-genome)   18 18
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   25 25
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   39 39
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   14 14
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   12 12
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   9 9
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   13 13
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   9 9
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   12 12
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   9 9
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   28 28
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   31 31
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   22 22
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   39 39
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   30 30
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   34 34
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   18 18
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   7 7
No Yes Human Gut Community Subject 7 (meta-genome)   20 20
No Yes Human Gut Community Subject 8 (meta-genome)   25 25
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   30 30
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   44 44
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   17 17
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   82 82
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   207 207
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   60 60
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   71 71
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   57 57
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   11 11
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   52 52
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   12 12
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   9 9
No Yes Mouse Gut Community lean1 (meta-genome)   1 1
No Yes Mouse Gut Community lean3 (meta-genome)   2 2
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes Mouse Gut Community ob2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   89647 89597
No Yes Nymph Lake Bulk Water (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   63 63
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   29 29
No Yes Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)   7 7
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   7 7
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   49 49
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   25 25
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   32 32
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   26 26
No Yes Sludge/US, Jazz Assembly (meta-genome)   9 9
No Yes Sludge/US, Phrap Assembly (meta-genome)   14 14
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   48 48
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   196 196
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   49 49
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   30 30
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   61 61
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   77 77
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   28 28
No Yes STRING v9.0.5 (STRING)   2113 2113
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   18 18
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   63 63
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   10 10
No Yes Termite Protist Endosymbiont Community (meta-genome)   20 20
No Yes Uniprot 2018_03 genome   33174 33143
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   7 7
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   48 48
No Yes Global Ocean Sampling Expedition (GOS)   417 417
No Yes NCBI plasmid sequences (Plasmids)   222 222
No Yes NCBI viral sequences (Viral)   14 14
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   45 45
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   107 107
No Yes TargetDB (Targets)   75 75
No Yes The Salmonella enterica Pan-genome (meta-genome)   138 138
No Yes UniProt viral sequences (Viral)   8 8

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.