SUPERFAMILY 1.75 HMM library and genome assignments server

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Prenyltransferase-like superfamily domain assignments
in
Saccharomyces cerevisiae 76

Network of domain occurrence in all genomes



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Select to display   Genome       Domains   Proteins
No Yes ALL   515 515
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes NCBI 2017_08 genome   249 249
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   4 4
No Yes Uniprot 2018_03 genome   172 172
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   39 39
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   22 22

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]