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  Home > Genomes > PUG domain-like domains in all genomes


PUG domain-like superfamily domain assignments
in
all genomes

Assignment details

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25 selected genomes have 96 significant domains in 96 proteins.

Showing genomes 1 to 25 of 393
  1 2 3 4 5 6 7 8 9 10 11   Next Last

Homo sapiens 76_38 has 14 significant domains in 14 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000280699   1.57e-32   6-108   PUG domain  
ENSP00000280700   7.72e-32   13-116   PUG domain  
ENSP00000301281   2.09e-30   146-273   PUG domain  
ENSP00000307980   7.85e-32   11-113   PUG domain  
ENSP00000315112   0.000000000000471   65-166   PUG domain  
ENSP00000378246   1.57e-30   93-220   PUG domain  
ENSP00000379886   6.02e-32   13-116   PUG domain  
ENSP00000387430   7.32e-32   13-116   PUG domain  
ENSP00000389888   1.06e-21   2-74   PUG domain  
ENSP00000412946   0.0000248   1-39   PUG domain  
ENSP00000452972   0.0000248   2-67   PUG domain  
ENSP00000453423   0.0000000000000119   64-166   PUG domain  
ENSP00000453601   0.0000000000000327   3-102   PUG domain  
ENSP00000467206   2.09e-30   77-203   PUG domain  
 
Weak hits:
ENSP00000289431   0.00157   69-152   PUG domain  
ENSP00000353024   0.0837   247-294   PUG domain  
ENSP00000379739   0.085   247-294   PUG domain  
ENSP00000387574   0.0183   80-104   PUG domain  
ENSP00000410244   0.0549   167-218   PUG domain  
ENSP00000416799   0.00157   69-152   PUG domain  
ENSP00000436928   0.0549   141-167   PUG domain  

Pan troglodytes 76_2.1.4 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000010519   0.000000000000471   65-166   PUG domain  
ENSPTRP00000017528   2.09e-30   144-271   PUG domain  
ENSPTRP00000025357   7.72e-32   13-116   PUG domain  
 
Weak hits:
ENSPTRP00000023412   0.00144   69-152   PUG domain  
ENSPTRP00000042678   0.0837   247-294   PUG domain  

Gorilla gorilla 76_3.1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000002720   7.72e-32   14-117   PUG domain  
ENSGGOP00000009034   2.09e-30   118-245   PUG domain  
ENSGGOP00000015643   0.000000000000471   65-166   PUG domain  
ENSGGOP00000018881   7.72e-32   14-117   PUG domain  
 
Weak hits:
ENSGGOP00000024590   0.00183   82-165   PUG domain  

Pongo abelii 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000006465   0.000000000000458   65-166   PUG domain  
ENSPPYP00000010548   1.83e-30   146-273   PUG domain  
ENSPPYP00000015731   1.09e-31   15-116   PUG domain  
 
Weak hits:
ENSPPYP00000001629   0.0929   199-245   PUG domain  
ENSPPYP00000012425   0.00248   69-151   PUG domain  
ENSPPYP00000023819   0.00248   69-151   PUG domain  

Nomascus leucogenys 76_1.0 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000003881   2.48e-30   146-273   PUG domain  
ENSNLEP00000004638   7.72e-32   13-116   PUG domain  
ENSNLEP00000018559   0.000000000000445   65-166   PUG domain  
ENSNLEP00000023791   0.000000000000445   65-166   PUG domain  
 
Weak hits:
ENSNLEP00000008513   0.00248   68-150   PUG domain  
ENSNLEP00000020252   0.0719   247-294   PUG domain  

Papio anubis 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000008027   5.62e-32   13-116   PUG domain  
ENSPANP00000009099   1.83e-30   146-273   PUG domain  
ENSPANP00000017683   0.000000000000549   66-166   PUG domain  
 
Weak hits:
ENSPANP00000001380   0.00942   635-671   PUG domain  
ENSPANP00000010115   0.0102   647-683   PUG domain  
ENSPANP00000014558   0.0955   83-123   PUG domain  
ENSPANP00000014617   0.00248   69-151   PUG domain  
ENSPANP00000014998   0.085   247-294   PUG domain  

Macaca mulatta 76_1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000016379   0.000000000000549   66-166   PUG domain  
ENSMMUP00000019418   7.32e-32   13-116   PUG domain  
ENSMMUP00000019420   7.72e-32   13-116   PUG domain  
ENSMMUP00000021964   1.83e-30   146-273   PUG domain  
ENSMMUP00000021965   1.31e-30   51-177   PUG domain  
ENSMMUP00000033060   0.000000000000222   65-166   PUG domain  
 
Weak hits:
ENSMMUP00000000994   0.00248   69-151   PUG domain  
ENSMMUP00000002433   0.085   247-294   PUG domain  
ENSMMUP00000002434   0.0785   247-294   PUG domain  
ENSMMUP00000019414   0.0445   2-35   PUG domain  

Callithrix jacchus 76_3.2.1 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000007404   0.0000536   1-39   PUG domain  
ENSCJAP00000007412   9.29e-22   2-74   PUG domain  
ENSCJAP00000013275   0.000000000000432   65-166   PUG domain  
ENSCJAP00000013312   0.000000000000445   65-166   PUG domain  
ENSCJAP00000013840   1.57e-29   144-271   PUG domain  
ENSCJAP00000013843   1.57e-29   146-273   PUG domain  
ENSCJAP00000049154   7.72e-32   14-117   PUG domain  
ENSCJAP00000050926   6.02e-32   14-117   PUG domain  
 
Weak hits:
ENSCJAP00000000864   0.00183   69-151   PUG domain  
ENSCJAP00000008610   0.0131   636-684   PUG domain  
ENSCJAP00000025381   0.085   247-294   PUG domain  
ENSCJAP00000025387   0.0837   247-294   PUG domain  
ENSCJAP00000047869   0.0131   637-685   PUG domain  

Otolemur garnettii 76_3 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000001968   6.67e-30   118-244   PUG domain  
ENSOGAP00000002139   3.66e-29   13-116   PUG domain  
ENSOGAP00000014851   0.000000000000706   65-165   PUG domain  
ENSOGAP00000018892   7.59e-30   146-272   PUG domain  
 
Weak hits:
ENSOGAP00000006443   0.00017   68-152   PUG domain  
ENSOGAP00000010607   0.0523   157-188   PUG domain  

Microcebus murinus 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000001551   0.000000000000379   63-165   PUG domain  
ENSMICP00000012325   6.28e-32   13-115   PUG domain  
 
Weak hits:
ENSMICP00000013128   0.0693   158-188   PUG domain  

Rattus norvegicus 76_5.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000008289   1.57e-31   11-115   PUG domain  
ENSRNOP00000026333   0.0000000000000994   65-165   PUG domain  
ENSRNOP00000066490   2.48e-29   100-226   PUG domain  
 
Weak hits:
ENSRNOP00000012604   0.000366   62-145   PUG domain  

Mus musculus 76_38 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000019443   0.000000000000209   65-165   PUG domain  
ENSMUSP00000019722   7.85e-29   146-273   PUG domain  
ENSMUSP00000022310   9.94e-32   11-115   PUG domain  
ENSMUSP00000118215   0.0000288   2-67   PUG domain  
ENSMUSP00000120423   1.7e-16   93-152   PUG domain  
ENSMUSP00000122955   0.000000000000068   65-165   PUG domain  
 
Weak hits:
ENSMUSP00000030461   0.0811   247-294   PUG domain  
ENSMUSP00000057095   0.000235   63-146   PUG domain  
ENSMUSP00000083385   0.0157   635-681   PUG domain  
ENSMUSP00000102088   0.0811   247-294   PUG domain  
ENSMUSP00000104834   0.000157   63-146   PUG domain  
ENSMUSP00000138734   0.00275   127-173   PUG domain  

Dipodomys ordii 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000008708   0.000000000000929   58-164   PUG domain  
ENSDORP00000009584   9.29e-32   14-115   PUG domain  
ENSDORP00000013377   3.4e-29   117-244   PUG domain  
 
Weak hits:
ENSDORP00000005511   0.00536   630-678   PUG domain  
ENSDORP00000012100   0.0942   248-294   PUG domain  
ENSDORP00000014560   0.00115   69-151   PUG domain  

Ictidomys tridecemlineatus 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000000841   1.31e-31   13-113   PUG domain  
ENSSTOP00000002027   0.00000000000458   67-164   PUG domain  
ENSSTOP00000013357   1.57e-29   147-274   PUG domain  
 
Weak hits:
ENSSTOP00000012104   0.0759   247-294   PUG domain  
ENSSTOP00000016188   0.00327   82-161   PUG domain  

Heterocephalus glaber v1.7-2 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000280700   4.84e-32   12-113   PUG domain  
HGL_H00000301281   1.01e-28   118-245   PUG domain  
HGL_H00000315112   0.00000000000017   66-162   PUG domain  
HGL_H00000416799-2   0.0000968   67-152   PUG domain  
 
Weak hits:
HGL_H00000416799-1   0.000942   69-152   PUG domain  

Cavia porcellus 76_3 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000013904   5.1e-31   12-111   PUG domain  
ENSCPOP00000016688   0.0000000000000536   66-165   PUG domain  
ENSCPOP00000019795   3.01e-27   146-278   PUG domain  
 
Weak hits:
ENSCPOP00000016783   0.000889   69-152   PUG domain  

Oryctolagus cuniculus 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000000563   9.29e-16   106-176   PUG domain  
ENSOCUP00000002487   0.000000000000144   65-166   PUG domain  
ENSOCUP00000011816   8.11e-17   106-176   PUG domain  
 
Weak hits:
ENSOCUP00000013203   0.00034   1-38   PUG domain  
ENSOCUP00000014270   0.0876   279-326   PUG domain  
ENSOCUP00000016014   0.00131   91-151   PUG domain  

Ochotona princeps 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000008127   3.53e-29   43-168   PUG domain  
ENSOPRP00000011895   7.72e-24   14-85   PUG domain  
ENSOPRP00000015142   0.00000000000392   66-137   PUG domain  

Tupaia belangeri 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000003059   0.00000000000017   150-243   PUG domain  
ENSTBEP00000015253   0.00000000000129   55-164   PUG domain  
 
Weak hits:
ENSTBEP00000002372   0.00131   69-152   PUG domain  
ENSTBEP00000011627   0.034   157-188   PUG domain  
ENSTBEP00000012893   0.0034   1-37   PUG domain  
ENSTBEP00000014325   0.0641   149-196   PUG domain  

Sus scrofa 76_10.2 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000002189   0.00000000000051   59-166   PUG domain  
ENSSSCP00000011963   7.32e-32   16-116   PUG domain  
ENSSSCP00000014359   1.44e-29   146-272   PUG domain  
ENSSSCP00000025613   0.000000000000484   59-166   PUG domain  

Bos taurus 76_3.1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000004933   6.8e-32   16-118   PUG domain  
ENSBTAP00000010767   3.53e-29   145-272   PUG domain  
ENSBTAP00000053642   0.000000000000484   65-166   PUG domain  
 
Weak hits:
ENSBTAP00000024049   0.00523   64-147   PUG domain  

Ovis aries 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000010280   3.14e-29   121-248   PUG domain  
ENSOARP00000020634   0.000000000000405   65-166   PUG domain  
 
Weak hits:
ENSOARP00000004449   0.000432   1-38   PUG domain  
ENSOARP00000014048   0.00288   81-163   PUG domain  

Vicugna pacos 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000008576   2.35e-21   1-72   PUG domain  

Tursiops truncatus 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000001618   4.58e-29   146-272   PUG domain  
ENSTTRP00000008174   0.000000000000458   65-166   PUG domain  
ENSTTRP00000014202   7.59e-29   12-114   PUG domain  
 
Weak hits:
ENSTTRP00000001900   0.000458   69-152   PUG domain  

Mustela putorius furo 76_1.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000004988   3.53e-29   146-272   PUG domain  
ENSMPUP00000012012   1.03e-31   92-194   PUG domain  
 
Weak hits:
ENSMPUP00000017448   0.000196   69-152   PUG domain  
ENSMPUP00000018681   0.0968   153-187   PUG domain  

  1 2 3 4 5 6 7 8 9 10 11   Next Last
Showing genomes 1 to 25 of 393

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Select to display   Genome       Domains   Proteins
No Yes ALL   9090 9090
No Yes Homo sapiens 76_38 Human 14 14
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 4
No Yes Pongo abelii 76_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 6 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 8 8
No Yes Otolemur garnettii 76_3 Small-eared galago 4 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 3 3
No Yes Mus musculus 76_38 House mouse 6 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 3 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 4 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Ochotona princeps 76 American pika 3 3
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 4 4
No Yes Bos taurus 76_3.1 Cattle 3 3
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 3 3
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 3 3
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 4 4
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 5 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Saccoglossus kowalevskii v3.0   4 4
No Yes Meleagris gallopavo 76_2 Turkey 3 3
No Yes Gallus gallus 76_4 Chicken 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Xenopus laevis African clawed frog 7 7
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 6 6
No Yes Lepisosteus oculatus 76 Spotted gar 4 4
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 7 7
No Yes Takifugu rubripes 76_4 Torafugu 10 10
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 5 5
No Yes Oryzias latipes 76_1 Japanese medaka 5 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 3 3
No Yes Astyanax mexicanus 76 Mexican tetra 5 5
No Yes Danio rerio 76_9 Zebrafish 6 6
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 4 4
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 3 3
No Yes Lottia gigantea Owl limpet 4 4
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 3 3
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   3 3
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   3 3
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 7 7
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   3 3
No Yes Drosophila virilis 1.2   4 4
No Yes Drosophila mojavensis 1.3   3 3
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 5 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 3
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 3 3
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   5 4
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   5 5
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 4 4
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   2 2
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   6 6
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 5
No Yes Hydra vulgaris   3 3
No Yes Amphimedon queenslandica   5 5
No Yes Trichoplax adhaerens   3 3
No Yes Proterospongia sp. ATCC 50818   5 5
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   2 2
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Microbotryum violaceum 22   2 2
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   2 2
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   2 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 2
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   2 2
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 2 2
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 6 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   15 15
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 9 9
No Yes Thellungiella halophila v173   6 6
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 6 5
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 6 6
No Yes Phaseolus vulgaris v186 French bean 5 5
No Yes Glycine max v109 Soybean 10 10
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 4 4
No Yes Malus domestica v196 Apple 7 7
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 7 7
No Yes Populus trichocarpa v156 Black cottonwood 5 5
No Yes Vitis vinifera Wine grape 3 3
No Yes Mimulus guttatus v140 Spotted monkey flower 4 4
No Yes Solanum lycopersicum v.2.3 Tomato 5 5
No Yes Solanum tuberosum Potato 7 7
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   6 6
No Yes Triticum urartu 22   4 4
No Yes Triticum aestivum 22 Bread wheat 11 11
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 4 4
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   5 5
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   5 5
No Yes Oryza nivara 22   6 6
No Yes Oryza brachyantha 22 Malo sina 4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 6 6
No Yes Oryza sativa v193 Rice 6 6
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 5 5
No Yes Panicum virgatum v202 Switchgrass 5 5
No Yes Setaria italica v164 Foxtail millet 4 4
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 4 4
No Yes Musa balbisiana Balbis banana 4 4
No Yes Musa acuminata 22 Wild Malaysian banana 4 4
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   3 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   6 6
No Yes Chlorella vulgaris   3 3
No Yes Volvox carteri f. nagariensis   5 5
No Yes Volvox carteri v199   6 6
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   2 2
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   4 4
No Yes Micromonas pusilla CCMP1545 v3.0   6 6
No Yes Porphyridium purpureum 02_2012   2 2
No Yes Thecamonas trahens ATCC 50062   6 6
No Yes Bigelowiella natans CCMP2755 22   15 14
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   5 5
No Yes Leishmania major strain Friedlin   4 4
No Yes Leishmania infantum JPCM5 2.4   5 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   5 5
No Yes Trypanosoma vivax   4 4
No Yes Trypanosoma cruzi strain CL Brener   6 5
No Yes Trypanosoma congolense 2.4   9 7
No Yes Trypanosoma brucei gambiense v4.1   6 5
No Yes Trypanosoma brucei TREU927 v4.1   6 5
No Yes Ectocarpus siliculosus   16 14
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   9 7
No Yes Pythium iwayamai DAOM BR242034 22   11 9
No Yes Pythium arrhenomanes ATCC 12531 22   10 8
No Yes Pythium ultimum v1.7-2   9 8
No Yes Pythium aphanidermatum DAOM BR444 22   6 6
No Yes Pythium irregulare DAOM BR486 22   11 9
No Yes Pythium vexans DAOM BR484 22   10 9
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 7 6
No Yes Phytophthora sojae 1.1   10 8
No Yes Phytophthora infestans T30-4   9 9
No Yes Phytophthora capsici   8 7
No Yes Hyaloperonospora arabidopsidis 22   5 5
No Yes Phaeodactylum tricornutumCCAP 1055/1   7 7
No Yes Fragilariopsis cylindrus   12 12
No Yes Thalassiosira pseudonana CCMP1335   10 10
No Yes Perkinsus marinus ATCC 50983   10 10
No Yes Paramecium tetraurelia   6 6
No Yes Tetrahymena thermophila SB210 1   8 8
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Cryptosporidium hominis   4 4
No Yes Cryptosporidium muris   5 5
No Yes Cryptosporidium parvum Iowa II   5 5
No Yes Neospora caninum   6 6
No Yes Toxoplasma gondii VEG   6 6
No Yes Toxoplasma gondii ME49   6 6
No Yes Toxoplasma gondii GT1   6 6
No Yes Babesia bovis T2Bo   4 4
No Yes Theileria parva   1 1
No Yes Theileria annulata   2 2
No Yes Plasmodium falciparum 3D7   6 6
No Yes Plasmodium vivax SaI-1 7.0   5 5
No Yes Plasmodium knowlesi strain H   5 5
No Yes Plasmodium yoelii ssp. yoelii 1   5 5
No Yes Plasmodium chabaudi   5 5
No Yes Plasmodium berghei ANKA   5 5
No Yes Symbiodinium minutum clade B1 v1.2   30 30
No Yes Naegleria gruberi   3 3
No Yes Guillardia theta CCMP2712 v1.0   8 7
No Yes Emiliania huxleyi CCMP1516   26 25
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 4 4
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 7 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 5 5
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Trypanosoma brucei Lister 427 v4.1   6 5
No Yes Neospora caninum Nc-Liverpool 6.2   6 6
No Yes Plasmodium falciparum HB3   3 3
No Yes Plasmodium falciparum Dd2   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 15 15
No Yes Homo sapiens (NCBI version) Human 7 7
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 3 3
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 7 7
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   10 10
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 5 5
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Homo sapiens 69_37 Human 3 3
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 69_3.1 Western gorilla 3 3
No Yes Pongo abelii 69_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 4 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 3 3
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 3 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 69_2 Rabbit 4 4
No Yes Ochotona princeps 69 American pika 3 3
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 3 3
No Yes Bos taurus 69_3.1 Cattle 3 3
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 3 3
No Yes Canis familiaris 69_3.1 Dog 3 3
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 3 3
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 4 4
No Yes Takifugu rubripes 69_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 4 4
No Yes Oryzias latipes 69_1 Japanese medaka 5 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 3 3
No Yes Danio rerio 69_9 Zebrafish 6 6
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2730 2713
No Yes Protozoadb 2010_08 (Protozoadb)   118 115
No Yes STRING v9.0.5 (STRING)   284 279
No Yes Uniprot 2018_03 genome   3234 3169
No Yes Global Ocean Sampling Expedition (GOS)   9 8
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   29 29
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   33 33
No Yes TargetDB (Targets)   17 16

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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