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PUG domain-like superfamily domain assignments
in
all eukaryotic genomes

Assignment details

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25 selected genomes have 100 significant domains in 100 proteins.

Showing genomes 51 to 75 of 382
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Xenopus laevis has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|115527879|gb|AAI24907|   1.7e-30   6-107   PUG domain  
gi|116487884|gb|AAI26009|   0.00000000051   59-132   PUG domain  
gi|122936392|gb|AAI30085|   4.18e-27   140-260   PUG domain  
gi|148223073|ref|NP_001091263|   4.18e-27   140-260   PUG domain  
gi|148227328|ref|NP_001090429|   0.00000000051   59-132   PUG domain  
gi|171460972|ref|NP_001116357|   1.7e-30   6-107   PUG domain  
gi|68534856|gb|AAH99262|   0.0000000183   20-68   PUG domain  
 
Weak hits:
gi|147900652|ref|NP_001079783|   0.000196   68-160   PUG domain  
gi|32450394|gb|AAH54226|   0.000196   68-160   PUG domain  

Xenopus tropicalis 76_4.2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXETP00000031992   0.000000000392   58-132   PUG domain  
ENSXETP00000052126   1.15e-27   137-259   PUG domain  
ENSXETP00000052657   0.000000000288   30-104   PUG domain  
 
Weak hits:
ENSXETP00000051789   0.00549   71-159   PUG domain  

Latimeria chalumnae 76_1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLACP00000001666   0.00000000000183   68-144   PUG domain  
ENSLACP00000001921   1.44e-31   144-270   PUG domain  
ENSLACP00000002403   1.31e-31   6-105   PUG domain  
ENSLACP00000002404   9.81e-32   11-112   PUG domain  
ENSLACP00000020072   0.00000314   62-154   PUG domain  
ENSLACP00000020073   0.00000314   66-158   PUG domain  

Lepisosteus oculatus 76 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLOCP00000001322   0.0000000000000119   28-122   PUG domain  
ENSLOCP00000005637   0.00000275   64-146   PUG domain  
ENSLOCP00000008052   6.67e-31   143-270   PUG domain  
ENSLOCP00000008398   8.76e-30   18-115   PUG domain  
 
Weak hits:
ENSLOCP00000006187   0.000693   67-168   PUG domain  
ENSLOCP00000006210   0.000589   67-168   PUG domain  

Gadus morhua 76_1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGMOP00000010589   1.7e-26   6-102   PUG domain  
ENSGMOP00000013242   0.0000000000157   32-123   PUG domain  
ENSGMOP00000016503   1.31e-31   117-243   PUG domain  
ENSGMOP00000020428   0.0000942   82-159   PUG domain  
 
Weak hits:
ENSGMOP00000004322   0.00068   75-121   PUG domain  
ENSGMOP00000020418   0.000103   82-159   PUG domain  

Tetraodon nigroviridis 76_8 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTNIP00000000967   3.14e-28   146-272   PUG domain  
ENSTNIP00000002754   0.0000000000105   30-128   PUG domain  
ENSTNIP00000011546   0.0000000000106   39-137   PUG domain  
ENSTNIP00000011547   0.0000000000107   39-137   PUG domain  
ENSTNIP00000016159   3.14e-28   147-273   PUG domain  
ENSTNIP00000021302   0.0000000000157   4-87   PUG domain  
ENSTNIP00000021337   9.42e-32   7-114   PUG domain  
 
Weak hits:
ENSTNIP00000003453   0.00523   76-144   PUG domain  
ENSTNIP00000021026   0.000301   68-157   PUG domain  

Takifugu rubripes 76_4 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTRUP00000016737   1.44e-31   8-115   PUG domain  
ENSTRUP00000024862   0.0000000000353   4-90   PUG domain  
ENSTRUP00000024863   0.0000000000353   4-90   PUG domain  
ENSTRUP00000024864   0.000000000034   4-90   PUG domain  
ENSTRUP00000024866   0.0000000000275   4-90   PUG domain  
ENSTRUP00000045450   0.00000000000994   28-121   PUG domain  
ENSTRUP00000045451   0.00000000000915   34-129   PUG domain  
ENSTRUP00000045453   0.00000000000575   29-125   PUG domain  
ENSTRUP00000046841   1.14e-31   144-273   PUG domain  
ENSTRUP00000046842   1.11e-31   137-266   PUG domain  
 
Weak hits:
ENSTRUP00000003146   0.00085   68-151   PUG domain  
ENSTRUP00000003147   0.000837   68-151   PUG domain  
ENSTRUP00000013522   0.00131   76-144   PUG domain  

Gasterosteus aculeatus 76_1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGACP00000002210   0.0000000000127   18-109   PUG domain  
ENSGACP00000010641   3.01e-30   3-103   PUG domain  
ENSGACP00000019039   2.09e-30   3-127   PUG domain  
ENSGACP00000019045   1.44e-30   142-269   PUG domain  
ENSGACP00000019599   0.0000000000811   31-122   PUG domain  
 
Weak hits:
ENSGACP00000000584   0.0275   153-188   PUG domain  

Oryzias latipes 76_1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSORLP00000005328   0.00000000000248   31-122   PUG domain  
ENSORLP00000010847   1.83e-29   3-104   PUG domain  
ENSORLP00000016757   0.000000000262   76-156   PUG domain  
ENSORLP00000019020   2.48e-31   153-278   PUG domain  
ENSORLP00000019188   0.00000745   88-171   PUG domain  
 
Weak hits:
ENSORLP00000011927   0.000129   83-166   PUG domain  

Xiphophorus maculatus 76_4.4.2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXMAP00000004565   0.0000000000105   58-160   PUG domain  
ENSXMAP00000011880   6.15e-32   141-268   PUG domain  
ENSXMAP00000016964   2.48e-30   3-107   PUG domain  
 
Weak hits:
ENSXMAP00000015553   0.00017   79-169   PUG domain  

Poecilia formosa 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPFOP00000001747   0.0000000000248   63-160   PUG domain  
ENSPFOP00000006930   6.28e-32   142-269   PUG domain  
ENSPFOP00000007354   2.75e-30   3-107   PUG domain  
 
Weak hits:
ENSPFOP00000007285   0.000157   78-169   PUG domain  

Oreochromis niloticus 76_1.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSONIP00000003231   9.29e-33   144-271   PUG domain  
ENSONIP00000008001   0.0000000000209   38-126   PUG domain  
ENSONIP00000008359   0.0000000000196   65-154   PUG domain  
 
Weak hits:
ENSONIP00000013454   0.000131   76-148   PUG domain  
ENSONIP00000021972   0.000288   74-158   PUG domain  
ENSONIP00000021973   0.000248   74-158   PUG domain  

Astyanax mexicanus 76 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAMXP00000011149   2.35e-30   9-104   PUG domain  
ENSAMXP00000014446   0.0000000000034   71-163   PUG domain  
ENSAMXP00000018467   1.57e-29   140-266   PUG domain  
ENSAMXP00000018785   0.0000000000000275   71-157   PUG domain  
ENSAMXP00000020485   0.000000222   693-793   PUG domain  
 
Weak hits:
ENSAMXP00000003058   0.00034   95-178   PUG domain  
ENSAMXP00000010710   0.00116   75-157   PUG domain  

Danio rerio 76_9 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDARP00000008500   1.57e-30   7-104   PUG domain  
ENSDARP00000010246   6.15e-31   141-269   PUG domain  
ENSDARP00000086690   0.0000889   75-144   PUG domain  
ENSDARP00000098464   0.0000759   100-182   PUG domain  
ENSDARP00000109107   0.000000000000196   72-162   PUG domain  
ENSDARP00000109354   0.0000785   81-159   PUG domain  

Oikopleura dioica has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
GSOIDT00001240001   2.88e-18   20-83   PUG domain  
GSOIDT00009293001   6.02e-20   153-251   PUG domain  

Ciona savignyi 76_2.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCSAVP00000014906   9.94e-22   8-100   PUG domain  
ENSCSAVP00000020093   0.0000000562   31-97   PUG domain  

Ciona intestinalis 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCINP00000033046   5.75e-24   158-253   PUG domain  
ENSCINP00000034572   3.79e-22   9-103   PUG domain  

Strongylocentrotus purpuratus v3.1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
SPU_012427   6.02e-28   92-208   PUG domain  
SPU_016524   1.16e-23   8-102   PUG domain  
SPU_020853   7.59e-28   45-161   PUG domain  
SPU_022488   0.0000353   11-84   PUG domain  
 
Weak hits:
SPU_019525   0.000575   108-178   PUG domain  

Adineta vaga has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
GSADVT00004532001   0.000000000000209   158-213   PUG domain  
GSADVT00017341001   0.0000000183   13-100   PUG domain  
GSADVT00043662001   0.000000051   13-99   PUG domain  
GSADVT00056903001   2.35e-22   158-269   PUG domain  

Octopus bimaculoides 280 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
Ocbimv22014332m.p   2.75e-27   152-269   PUG domain  
Ocbimv22015611m.p   5.89e-24   11-96   PUG domain  

Crassostrea gigas 22 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
EKC20424   9.29e-27   5-102   PUG domain  
EKC32576   0.000000000719   62-139   PUG domain  
EKC33984   1.44e-27   151-271   PUG domain  

Lottia gigantea has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Lotgi1|158366|fgenesh2_pg.C_sca_17000017   7.45e-27   113-233   PUG domain  
jgi|Lotgi1|232192|estExt_fgenesh2_pg.C_sca_260142   0.00000144   82-160   PUG domain  
jgi|Lotgi1|234344|estExt_fgenesh2_pg.C_sca_490139   2.48e-19   12-101   PUG domain  
jgi|Lotgi1|237618|estExt_fgenesh2_pg.C_sca_1120045   6.02e-25   6-105   PUG domain  

Helobdella robusta has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Helro1|104441   3.4e-26   162-288   PUG domain  
jgi|Helro1|81998   0.0000000017   5-79   PUG domain  
 
Weak hits:
jgi|Helro1|166708   0.0405   201-249   PUG domain  
jgi|Helro1|170891   0.0418   206-250   PUG domain  
jgi|Helro1|175488   0.000432   59-129   PUG domain  

Capitella sp. I has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Capca1|133674|e_gw1.336.58.1   3.14e-23   11-100   PUG domain  
jgi|Capca1|174430|estExt_Genewise1Plus.C_340108   2.88e-25   136-261   PUG domain  

Danaus plexippus OGS1.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
DPGLEAN01501-PA   0.0000000144   16-99   PUG domain  
DPGLEAN16982-PA   2.35e-30   148-275   PUG domain  
 
Weak hits:
DPGLEAN07826-PA   0.000131   307-369   PUG domain  

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Showing genomes 51 to 75 of 382

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Select to display   Genome       Domains   Proteins
No Yes ALL   9090 9090
No Yes Homo sapiens 76_38 Human 14 14
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 4
No Yes Pongo abelii 76_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 6 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 8 8
No Yes Otolemur garnettii 76_3 Small-eared galago 4 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 3 3
No Yes Mus musculus 76_38 House mouse 6 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 3 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 4 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Ochotona princeps 76 American pika 3 3
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 4 4
No Yes Bos taurus 76_3.1 Cattle 3 3
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 3 3
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 3 3
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 4 4
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 5 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Saccoglossus kowalevskii v3.0   4 4
No Yes Meleagris gallopavo 76_2 Turkey 3 3
No Yes Gallus gallus 76_4 Chicken 3 3
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Xenopus laevis African clawed frog 7 7
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 6 6
No Yes Lepisosteus oculatus 76 Spotted gar 4 4
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 7 7
No Yes Takifugu rubripes 76_4 Torafugu 10 10
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 5 5
No Yes Oryzias latipes 76_1 Japanese medaka 5 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 3 3
No Yes Astyanax mexicanus 76 Mexican tetra 5 5
No Yes Danio rerio 76_9 Zebrafish 6 6
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 4 4
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 3 3
No Yes Lottia gigantea Owl limpet 4 4
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 3 3
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   3 3
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   3 3
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   3 3
No Yes Drosophila melanogaster 76_5 Fruit fly 7 7
No Yes Drosophila erecta 1.3   3 3
No Yes Drosophila ananassae 1.3   3 3
No Yes Drosophila virilis 1.2   4 4
No Yes Drosophila mojavensis 1.3   3 3
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 5 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 3
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 3 3
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   5 4
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   5 5
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 4 4
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   2 2
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   6 6
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 5
No Yes Hydra vulgaris   3 3
No Yes Amphimedon queenslandica   5 5
No Yes Trichoplax adhaerens   3 3
No Yes Proterospongia sp. ATCC 50818   5 5
No Yes Monosiga brevicollis   2 2
No Yes Sphaeroforma arctica JP610   2 2
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Microbotryum violaceum 22   2 2
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   2 2
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   2 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 2
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   2 2
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 2 2
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 6 6
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   15 15
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 9 9
No Yes Thellungiella halophila v173   6 6
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 6 5
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 6 6
No Yes Phaseolus vulgaris v186 French bean 5 5
No Yes Glycine max v109 Soybean 10 10
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 4 4
No Yes Malus domestica v196 Apple 7 7
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 7 7
No Yes Populus trichocarpa v156 Black cottonwood 5 5
No Yes Vitis vinifera Wine grape 3 3
No Yes Mimulus guttatus v140 Spotted monkey flower 4 4
No Yes Solanum lycopersicum v.2.3 Tomato 5 5
No Yes Solanum tuberosum Potato 7 7
No Yes Actinidia chinensis Hongyang   5 5
No Yes Aquilegia coerulea v195   6 6
No Yes Triticum urartu 22   4 4
No Yes Triticum aestivum 22 Bread wheat 11 11
No Yes Aegilops tauschii 22   2 2
No Yes Brachypodium distachyon Stiff brome 5 5
No Yes Oryza barthii 22 African wild rice 4 4
No Yes Oryza meridionalis 22   5 5
No Yes Oryza glumaepatula 22   5 5
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   5 5
No Yes Oryza nivara 22   6 6
No Yes Oryza brachyantha 22 Malo sina 4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 6 6
No Yes Oryza sativa v193 Rice 6 6
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 5 5
No Yes Panicum virgatum v202 Switchgrass 5 5
No Yes Setaria italica v164 Foxtail millet 4 4
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 4 4
No Yes Musa balbisiana Balbis banana 4 4
No Yes Musa acuminata 22 Wild Malaysian banana 4 4
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   3 3
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   6 6
No Yes Chlorella vulgaris   3 3
No Yes Volvox carteri f. nagariensis   5 5
No Yes Volvox carteri v199   6 6
No Yes Chlamydomonas reinhardtii 4.0   5 5
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   2 2
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   4 4
No Yes Micromonas sp. RCC299   4 4
No Yes Micromonas pusilla CCMP1545 v3.0   6 6
No Yes Porphyridium purpureum 02_2012   2 2
No Yes Thecamonas trahens ATCC 50062   6 6
No Yes Bigelowiella natans CCMP2755 22   15 14
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   5 5
No Yes Leishmania major strain Friedlin   4 4
No Yes Leishmania infantum JPCM5 2.4   5 5
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   5 5
No Yes Trypanosoma vivax   4 4
No Yes Trypanosoma cruzi strain CL Brener   6 5
No Yes Trypanosoma congolense 2.4   9 7
No Yes Trypanosoma brucei gambiense v4.1   6 5
No Yes Trypanosoma brucei TREU927 v4.1   6 5
No Yes Ectocarpus siliculosus   16 14
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   9 7
No Yes Pythium iwayamai DAOM BR242034 22   11 9
No Yes Pythium arrhenomanes ATCC 12531 22   10 8
No Yes Pythium ultimum v1.7-2   9 8
No Yes Pythium aphanidermatum DAOM BR444 22   6 6
No Yes Pythium irregulare DAOM BR486 22   11 9
No Yes Pythium vexans DAOM BR484 22   10 9
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 7 6
No Yes Phytophthora sojae 1.1   10 8
No Yes Phytophthora infestans T30-4   9 9
No Yes Phytophthora capsici   8 7
No Yes Hyaloperonospora arabidopsidis 22   5 5
No Yes Phaeodactylum tricornutumCCAP 1055/1   7 7
No Yes Fragilariopsis cylindrus   12 12
No Yes Thalassiosira pseudonana CCMP1335   10 10
No Yes Perkinsus marinus ATCC 50983   10 10
No Yes Paramecium tetraurelia   6 6
No Yes Tetrahymena thermophila SB210 1   8 8
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Cryptosporidium hominis   4 4
No Yes Cryptosporidium muris   5 5
No Yes Cryptosporidium parvum Iowa II   5 5
No Yes Neospora caninum   6 6
No Yes Toxoplasma gondii VEG   6 6
No Yes Toxoplasma gondii ME49   6 6
No Yes Toxoplasma gondii GT1   6 6
No Yes Babesia bovis T2Bo   4 4
No Yes Theileria parva   1 1
No Yes Theileria annulata   2 2
No Yes Plasmodium falciparum 3D7   6 6
No Yes Plasmodium vivax SaI-1 7.0   5 5
No Yes Plasmodium knowlesi strain H   5 5
No Yes Plasmodium yoelii ssp. yoelii 1   5 5
No Yes Plasmodium chabaudi   5 5
No Yes Plasmodium berghei ANKA   5 5
No Yes Symbiodinium minutum clade B1 v1.2   30 30
No Yes Naegleria gruberi   3 3
No Yes Guillardia theta CCMP2712 v1.0   8 7
No Yes Emiliania huxleyi CCMP1516   26 25
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 4 4
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 7 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 3 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 5 5
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5
No Yes Trypanosoma brucei Lister 427 v4.1   6 5
No Yes Neospora caninum Nc-Liverpool 6.2   6 6
No Yes Plasmodium falciparum HB3   3 3
No Yes Plasmodium falciparum Dd2   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 15 15
No Yes Homo sapiens (NCBI version) Human 7 7
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 3 3
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 7 7
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   10 10
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 5 5
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Homo sapiens 69_37 Human 3 3
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 69_3.1 Western gorilla 3 3
No Yes Pongo abelii 69_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 4 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 3 3
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 3 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 69_2 Rabbit 4 4
No Yes Ochotona princeps 69 American pika 3 3
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 3 3
No Yes Bos taurus 69_3.1 Cattle 3 3
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 3 3
No Yes Canis familiaris 69_3.1 Dog 3 3
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 3 3
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 4 4
No Yes Takifugu rubripes 69_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 4 4
No Yes Oryzias latipes 69_1 Japanese medaka 5 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 3 3
No Yes Danio rerio 69_9 Zebrafish 6 6
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 3 3
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2730 2713
No Yes Protozoadb 2010_08 (Protozoadb)   118 115
No Yes STRING v9.0.5 (STRING)   284 279
No Yes Uniprot 2018_03 genome   3234 3169
No Yes Global Ocean Sampling Expedition (GOS)   9 8
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   29 29
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   33 33
No Yes TargetDB (Targets)   17 16

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