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  Home > Genomes > Solanum tuberosum > XisI-like domains


XisI-like superfamily domain assignments
in
Solanum tuberosum

Network of domain occurrence in all genomes


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Select to display   Genome       Domains   Proteins
No Yes ALL   3924 3924
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechococcus sp. PCC 7502   2 2
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   9 9
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Cyanothece sp. PCC 8802   4 4
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes Halothece sp. PCC 7418   3 3
No Yes Microcystis aeruginosa NIES-843   10 10
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   17 17
No Yes Anabaena variabilis ATCC 29413   5 5
No Yes 'Nostoc azollae' 0708   3 3
No Yes Nostoc sp. PCC 7107   5 5
No Yes Nostoc punctiforme PCC 73102   10 10
No Yes Nostoc sp. PCC 7120   6 6
No Yes Nostoc sp. PCC 7524   5 5
No Yes Anabaena sp. 90   14 14
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Haliscomenobacter hydrossis DSM 1100   13 13
No Yes Fibrella aestuarina   1 1
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   2 2
No Yes Chroococcidiopsis thermalis PCC 7203   5 5
No Yes Dactylococcopsis salina PCC 8305   6 6
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Crinalium epipsammum PCC 9333   6 6
No Yes Oscillatoria nigro-viridis PCC 7112   16 16
No Yes Oscillatoria acuminata PCC 6304   3 3
No Yes Arthrospira platensis NIES-39   5 5
No Yes Cyanothece sp. PCC 7822   5 5
No Yes Cyanothece sp. PCC 7425   2 2
No Yes Cyanothece sp. PCC 7424   4 4
No Yes Cyanothece sp. ATCC 51142   5 5
No Yes Cyanothece sp. PCC 8801   4 4
No Yes Cyanobacterium aponinum PCC 10605   2 2
No Yes Cyanobacterium stanieri PCC 7202   3 3
No Yes Calothrix parietina Calothrix sp. PCC 6303   9 9
No Yes Cylindrospermum stagnale PCC 7417   6 6
No Yes Anabaena cylindrica PCC 7122   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   1520 1519
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   20 20
No Yes STRING v9.0.5 (STRING)   56 56
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1758 1757
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   7 7
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   21 21
No Yes TargetDB (Targets)   10 10

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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