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Sphingomyelin phosphodiesterase-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1zwxA   7.85e-85   0.000000148   8-296   1zwx A:41-333  
2ddrA   5.75e-80   0.000000359   7-303   2ddr A:7-305  

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Select to display   Genome       Domains   Proteins
No Yes ALL   15345 15345
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Adineta vaga   4 4
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   1 1
No Yes Listeria ivanovii subsp. ivanovii PAM 55   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Staphylococcus lugdunensis HKU09-01   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   2 2
No Yes Leptospira interrogans serovar Lai str. IPAV   4 4
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Aeromonas veronii B565   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   2 2
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Staphylococcus pseudintermedius ED99   1 1
No Yes Staphylococcus lugdunensis N920143   1 1
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   1 1
No Yes Staphylococcus aureus M1   1 1
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus 04-02981   1 1
No Yes Staphylococcus aureus RF122   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus SA957   1 1
No Yes Staphylococcus aureus subsp. aureus CN1   1 1
No Yes Staphylococcus aureus subsp. aureus SA40   1 1
No Yes Staphylococcus aureus subsp. aureus 11819-97   1 1
No Yes Staphylococcus aureus subsp. aureus M013   1 1
No Yes Staphylococcus aureus subsp. aureus VC40   1 1
No Yes Staphylococcus aureus subsp. aureus T0131   1 1
No Yes Staphylococcus aureus subsp. aureus LGA251   1 1
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   1 1
No Yes Staphylococcus aureus subsp. aureus JKD6159   1 1
No Yes Staphylococcus aureus subsp. aureus ED133   1 1
No Yes Staphylococcus aureus subsp. aureus ED98   1 1
No Yes Staphylococcus aureus subsp. aureus TW20   1 1
No Yes Staphylococcus aureus subsp. aureus 55/2053   1 1
No Yes Staphylococcus aureus subsp. aureus TCH60   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus 71193   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Staphylococcus aureus subsp. aureus str. Newman   1 1
No Yes Staphylococcus aureus subsp. aureus Mu3   1 1
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   1 1
No Yes Staphylococcus aureus subsp. aureus JH9   1 1
No Yes Staphylococcus aureus subsp. aureus MW2   1 1
No Yes Staphylococcus aureus subsp. aureus N315   1 1
No Yes Staphylococcus aureus subsp. aureus Mu50   1 1
No Yes Staphylococcus aureus subsp. aureus COL   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   2 2
No Yes Leptospira interrogans serovar Lai str. 56601   4 4
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   4 4
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Acinetobacter junii SH205   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   13473 13473
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   61 61
No Yes Uniprot 2018_03 genome   1513 1513
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   12 12
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   62 62
No Yes TargetDB (Targets)   8 8

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