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ImpE-like family domain assignments


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View all assignments containing a ImpE-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   2701 2701
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Azoarcus sp. BH72   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes NCBI 2017_08 genome   2139 2139
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   30 30
No Yes Uniprot 2018_03 genome   426 426
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4 4
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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