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Nucleolar RNA-binding protein Nop10-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 7 significant domains in 7 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1y2yA   1.83e-21   0.0000389   2-56   2aqa A:2-58  
2apoB   7.32e-20   0.0000437   4-53   2apo B:403-457  
2aqaA   2.49e-21   0.0000389   1-55   2aqa A:2-58  
2aqcA   8.78e-20   0.0000437   7-56   2apo B:403-457  
2ey4E   5.12e-22   0.0000473   4-51   2ey4 E:4-55  
2hvyC   5.49e-22   0.0000473   4-51   2ey4 E:4-55  
2rfkB   4.76e-22   0.0000473   2-49   2ey4 E:4-55  

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Select to display   Genome       Domains   Proteins
No Yes ALL   622 622
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Dothistroma septosporum   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus niger 22   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   1 1
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   1 1
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   1 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Candida lusitaniae ATCC 42720   1 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Kluyveromyces thermotolerans CBS 6340   1 1
No Yes Lachancea kluyveri   1 1
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus yayanosii CH1   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Candida albicans WO-1   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae T73   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Core Eukaryotic Genes 458 (CEGMA)   1 1
No Yes NCBI 2017_08 genome   124 124
No Yes STRING v9.0.5 (STRING)   28 28
No Yes Uniprot 2018_03 genome   218 218
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   22 22
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   45 45
No Yes TargetDB (Targets)   2 2

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