SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > HIT/MYND zinc finger-like domains in all genomes


HIT/MYND zinc finger-like superfamily domain assignments
in
all genomes

Assignment details

(show help)

25 selected genomes have 352 significant domains in 338 proteins.

Showing genomes 126 to 150 of 584
First Previous   6 7 8 9 10 11 12 13 14 15 16   Next Last

Trichinella spiralis 22 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
EFV51282   0.00000112   131-165   HIT zinc finger  
EFV51325   0.000000000106   359-402   MYND zinc finger  
EFV52708   0.000000124   435-477   MYND zinc finger  
EFV57498   0.00000000471   369-410   MYND zinc finger  
EFV60442   0.000000152   32-71   HIT zinc finger  
EFV60485   0.00000000288   26-80   MYND zinc finger  
EFV60808   0.00000000209   7-58   MYND zinc finger  
EFV61247   0.000000000103   25-73   MYND zinc finger  
EFV61824   0.0000000785   809-850   MYND zinc finger  
 
Weak hits:
EFV51405   0.00907   34-62   MYND zinc finger  
EFV53728   0.0811   144-166   MYND zinc finger  
EFV55280   0.000244   1088-1139   MYND zinc finger  
EFV58949   0.000214   423-448   HIT zinc finger  
EFV60841   0.0889   4-26   MYND zinc finger  

Hymenolepis microstoma has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
HmN_000017500.1   0.000000000131   320-372   MYND zinc finger  
HmN_000045500.1   0.0000000384   933-977   MYND zinc finger  
HmN_000085900.1   0.0000000000924   138-184   MYND zinc finger  
HmN_000088300.1   0.000000279   638-685   MYND zinc finger  
HmN_000208500.1   0.00000785   108-141   HIT zinc finger  
HmN_000249700.1   0.0000575   282-312   HIT zinc finger  
HmN_000392300.1   0.00000000000122   461-507   MYND zinc finger  
HmN_000449100.1   0.00000000105   16-54   HIT zinc finger  
HmN_000455100.1   0.0000000366   778-822   MYND zinc finger  
HmN_000482500.1   0.000000392   1016-1060   MYND zinc finger  
 
Weak hits:
HmN_000047200.1   0.000837   215-240   HIT zinc finger  
HmN_000115600.1   0.0424   285-339   MYND zinc finger  
HmN_000302200.1   0.00178   326-362   MYND zinc finger  
HmN_000332800.1   0.0011   9-46   MYND zinc finger  
HmN_000614800.1   0.0011   324-357   MYND zinc finger  
HmN_000630900.1   0.00492   218-252   MYND zinc finger  
HmN_000655900.1   0.0994   311-344   MYND zinc finger  
HmN_000691300.1   0.00497   87-114   HIT zinc finger  
HmN_000739000.1   0.00136   326-362   MYND zinc finger  
HmN_000742100.1   0.0136   331-366   MYND zinc finger  
HmN_000769700.1   0.0011   268-326   MYND zinc finger  
HmN_000809000.1   0.000314   310-355   MYND zinc finger  
HmN_001006000.1   0.00017   683-714   MYND zinc finger  

Echinococcus multilocularis has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
EmuJ_000102100.1   0.000000000174   337-389   MYND zinc finger  
EmuJ_000177000.1   0.0000000488   368-415   MYND zinc finger  
EmuJ_000187200.1   0.000000000392   15-54   HIT zinc finger  
EmuJ_000231400.1   0.0000000209   9-45   HIT zinc finger  
EmuJ_000431500.1   0.00000017   833-876   MYND zinc finger  
EmuJ_000463700.1   0.00000000000112   452-497   MYND zinc finger  
EmuJ_000599000.1   0.000000000209   138-184   MYND zinc finger  
EmuJ_000687100.1   0.0000000000436   54-97   MYND zinc finger  
EmuJ_000728700.1   0.00000000199   42-79   HIT zinc finger  
EmuJ_000874400.1   0.00000034   996-1039   MYND zinc finger  
 
Weak hits:
EmuJ_000100100.1   0.000174   1342-1373   MYND zinc finger  
EmuJ_000231600.1   0.000785   111-140   HIT zinc finger  
EmuJ_000651900.1   0.000785   282-312   HIT zinc finger  
EmuJ_000766700.1   0.0445   981-1009   MYND zinc finger  
EmuJ_000814800.1   0.0303   90-121   MYND zinc finger  
EmuJ_001076700.1   0.000466   309-347   MYND zinc finger  
EmuJ_001076800.1   0.0034   67-103   MYND zinc finger  

Echinococcus granulosus has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
EgrG_000102100.1   0.000000000192   337-389   MYND zinc finger  
EgrG_000177000.1   0.0000000453   367-415   MYND zinc finger  
EgrG_000187200.1   0.000000000262   15-54   HIT zinc finger  
EgrG_000231400.1   0.0000000214   9-45   HIT zinc finger  
EgrG_000431500.1   0.000000115   834-877   MYND zinc finger  
EgrG_000463700.1   0.000000000000645   452-497   MYND zinc finger  
EgrG_000599000.1   0.000000000314   138-184   MYND zinc finger  
EgrG_000687100.1   0.0000000000436   54-97   MYND zinc finger  
EgrG_000728700.1   0.00000000199   42-79   HIT zinc finger  
EgrG_000874400.1   0.00000034   1002-1045   MYND zinc finger  
 
Weak hits:
EgrG_000100100.1   0.000174   1347-1378   MYND zinc finger  
EgrG_000231600.1   0.000837   111-140   HIT zinc finger  
EgrG_000651900.1   0.000785   283-313   HIT zinc finger  
EgrG_000766700.1   0.012   981-1009   MYND zinc finger  
EgrG_000814800.1   0.0303   90-121   MYND zinc finger  
EgrG_001076700.1   0.000628   310-347   MYND zinc finger  
EgrG_001076800.1   0.00366   68-103   MYND zinc finger  

Taenia solium has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
TsM_000179000;OldName=hunter_12467   0.0000000115   15-54   HIT zinc finger  
TsM_000246500;OldName=hunter_14930   0.0000000445   30-68   HIT zinc finger  
TsM_000314400;OldName=hunter_17561   0.000000183   834-877   MYND zinc finger  
TsM_000355500;OldName=hunter_19018   0.000000000127   153-199   MYND zinc finger  
TsM_000568900;OldName=maker_24341   0.000000033   9-45   HIT zinc finger  
TsM_000586400;OldName=maker_24856   0.00000000000152   452-497   MYND zinc finger  
TsM_000587700;OldName=maker_24912   0.0000000000296   328-381   MYND zinc finger  
TsM_000717700;OldName=maker_29084   0.000000366   996-1039   MYND zinc finger  
TsM_001082900;OldName=snap_43026   0.0000000209   957-1003   MYND zinc finger  
 
Weak hits:
TsM_000083500;OldName=augustus_6163   0.000192   1338-1382   MYND zinc finger  
TsM_000122100;OldName=hunter_10251   0.000225   15-70   MYND zinc finger  
TsM_000228700;OldName=hunter_14270   0.0942   235-262   MYND zinc finger  
TsM_000322400;OldName=hunter_17840   0.00837   105-122   HIT zinc finger  
TsM_000568800;OldName=maker_24340   0.000145   109-142   HIT zinc finger  
TsM_000931400;OldName=snap_36659   0.00105   279-310   HIT zinc finger  

Schistosoma mansoni has 14 significant domains in 14 proteins.

     

Sequence ID   Evalue   Region   Family  
Smp_006590   0.00000523   44-77   HIT zinc finger  
Smp_012740.2   0.0000000000124   324-378   MYND zinc finger  
Smp_073950   0.000000000107   231-266   HIT zinc finger  
Smp_080840   0.000000000199   18-55   HIT zinc finger  
Smp_096240   0.00000175   1130-1172   MYND zinc finger  
Smp_102750   0.0000000000279   19-63   MYND zinc finger  
Smp_103830.1   0.0000288   112-146   HIT zinc finger  
Smp_103830.2   0.000034   123-157   HIT zinc finger  
Smp_103830.3   0.0000288   112-146   HIT zinc finger  
Smp_135930   0.000000000000296   423-469   MYND zinc finger  
Smp_143570   0.00000732   1166-1207   MYND zinc finger  
Smp_158560.1   0.00000000108   1985-2033   MYND zinc finger  
Smp_160490   0.0000000785   1224-1273   MYND zinc finger  
Smp_165560   0.0000000000506   137-180   MYND zinc finger  
 
Weak hits:
Smp_000700   0.00209   308-345   MYND zinc finger  
Smp_111800   0.00178   63-95   HIT zinc finger  

Mnemiopsis leidyi has 22 significant domains in 22 proteins.

     

Sequence ID   Evalue   Region   Family  
ML001115a-PA   0.0000994   259-308   MYND zinc finger  
ML00535a-PA   0.000000541   395-426   MYND zinc finger  
ML033618a-PA   0.000000000000994   314-354   MYND zinc finger  
ML03787a-PA   0.00000000192   198-248   MYND zinc finger  
ML040513a-PA   0.0000872   16-60   MYND zinc finger  
ML05942a-PA   0.00000000000366   3-43   MYND zinc finger  
ML073244a-PA   0.00000000167   241-279   MYND zinc finger  
ML082612a-PA   0.00000000000192   12-58   MYND zinc finger  
ML08446a-PA   0.000000523   1404-1444   HIT zinc finger  
ML09538a-PA   0.000000108   595-638   MYND zinc finger  
ML10593a-PA   0.0000152   571-614   MYND zinc finger  
ML120721a-PA   0.0000000331   482-524   MYND zinc finger  
ML128417a-PA   0.0000000000488   203-246   MYND zinc finger  
ML13255a-PA   0.0000000016   121-168   MYND zinc finger  
ML143032a-PA   0.0000173   5-38   HIT zinc finger  
ML16643a-PA   0.000000693   1757-1800   MYND zinc finger  
ML174721a-PA   0.00000698   71-127   MYND zinc finger  
ML25283a-PA   0.0000000000103   295-341   MYND zinc finger  
ML257619a-PA   0.0000000131   2-31   MYND zinc finger  
ML257621a-PA   0.0000000000558   5-49   MYND zinc finger  
ML29629a-PA   0.0000000000262   331-374   MYND zinc finger  
ML48641a-PA   0.0000000000103   318-363   MYND zinc finger  

Thelohanellus kitauei has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
KII63152   0.0000000000366   92-136   MYND zinc finger  
KII63313   0.0000000000126   370-416   MYND zinc finger  

Acropora digitifera v1.0 has 33 significant domains in 28 proteins.

     

Sequence ID   Evalue   Region   Family  
adi_v1.00598   0.000000000209   303-347   MYND zinc finger  
adi_v1.00599   0.00000000068   1391-1442   MYND zinc finger  
adi_v1.00830   0.00000000000628   621-665   MYND zinc finger  
adi_v1.03084   0.0000000000628   121-164   MYND zinc finger  
adi_v1.04008   0.000000000628   250-297   MYND zinc finger  
  0.000000000663   48-92   MYND zinc finger  
  0.00000015   204-246   MYND zinc finger  
  0.0000131   3-44   MYND zinc finger  
adi_v1.04009   0.000000082   3-32   MYND zinc finger  
adi_v1.04238   0.0000000000227   191-237   MYND zinc finger  
adi_v1.05801   0.000000162   14-52   HIT zinc finger  
adi_v1.06324   0.00000667   533-564   MYND zinc finger  
adi_v1.06325   0.0000235   144-175   MYND zinc finger  
adi_v1.06749   0.00000000244   272-314   MYND zinc finger  
adi_v1.07327   0.00000924   2808-2843   MYND zinc finger  
adi_v1.07765   0.000000000419   631-676   MYND zinc finger  
adi_v1.07766   0.000000000471   1424-1474   MYND zinc finger  
adi_v1.09576   0.0000000000977   1635-1686   MYND zinc finger  
adi_v1.09577   0.0000000000663   1428-1478   MYND zinc finger  
adi_v1.09578   0.000000000244   632-677   MYND zinc finger  
adi_v1.10893   0.000011   2163-2192   MYND zinc finger  
adi_v1.12548   0.00000000366   48-93   MYND zinc finger  
  0.000000138   3-44   MYND zinc finger  
adi_v1.12549   0.0000000000663   48-93   MYND zinc finger  
  0.0000000296   3-44   MYND zinc finger  
adi_v1.14381   0.0000000645   185-233   MYND zinc finger  
adi_v1.16410   0.000000000541   151-196   MYND zinc finger  
adi_v1.17326   0.00000000192   2-34   MYND zinc finger  
adi_v1.20074   0.000000000296   10-51   MYND zinc finger  
adi_v1.21344   0.000000000476   9-44   HIT zinc finger  
adi_v1.23233   0.00000000112   202-251   MYND zinc finger  
adi_v1.24073   0.000000244   284-326   MYND zinc finger  
adi_v1.24309   0.0000384   260-307   MYND zinc finger  
 
Weak hits:
adi_v1.09572   0.046   297-322   HIT zinc finger  
adi_v1.16578   0.00165   208-227   MYND zinc finger  
adi_v1.17099   0.00855   286-305   MYND zinc finger  

Nematostella vectensis 1.0 has 21 significant domains in 20 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Nemve1|119279|e_gw.160.71.1   0.0000000000453   431-474   MYND zinc finger  
jgi|Nemve1|124123|e_gw.207.2.1   0.0000445   82-125   MYND zinc finger  
jgi|Nemve1|135947|e_gw.365.41.1   0.0000000153   242-294   MYND zinc finger  
jgi|Nemve1|159435|estExt_gwp.C_70515   0.0000000000209   146-191   MYND zinc finger  
jgi|Nemve1|165958|estExt_gwp.C_670019   0.000000000000115   401-444   MYND zinc finger  
jgi|Nemve1|184605|estExt_GenewiseH_1.C_590174   0.00000000000593   13-59   MYND zinc finger  
jgi|Nemve1|196111|fgenesh1_pg.scaffold_1000042   0.0000000000392   311-357   MYND zinc finger  
jgi|Nemve1|202860|fgenesh1_pg.scaffold_38000090   0.000000000837   321-372   MYND zinc finger  
jgi|Nemve1|214433|fgenesh1_pg.scaffold_200000015   0.0000000419   197-246   MYND zinc finger  
jgi|Nemve1|215978|fgenesh1_pg.scaffold_245000014   0.00000000183   681-730   MYND zinc finger  
jgi|Nemve1|218071|fgenesh1_pg.scaffold_327000013   0.00000000366   348-393   MYND zinc finger  
jgi|Nemve1|220903|fgenesh1_pg.scaffold_600000002   0.00000000471   167-217   MYND zinc finger  
jgi|Nemve1|223226|fgenesh1_pg.scaffold_2445000001   0.00000152   30-74   HIT zinc finger  
jgi|Nemve1|241186|estExt_fgenesh1_pg.C_410055   0.00000942   1904-1935   MYND zinc finger  
jgi|Nemve1|244148|estExt_fgenesh1_pg.C_1110019   0.00000523   132-163   MYND zinc finger  
jgi|Nemve1|245520|estExt_fgenesh1_pg.C_1640033   0.000000000785   52-98   MYND zinc finger  
  0.0000401   3-49   MYND zinc finger  
jgi|Nemve1|247274|estExt_fgenesh1_pg.C_2860020   0.0000000000288   4-41   HIT zinc finger  
jgi|Nemve1|247912|estExt_fgenesh1_pg.C_3760025   0.0000244   390-438   MYND zinc finger  
jgi|Nemve1|248684|estExt_fgenesh1_pg.C_12830002   0.0000148   246-293   MYND zinc finger  
jgi|Nemve1|34021|gw.47.131.1   0.00000000068   2-37   HIT zinc finger  
 
Weak hits:
jgi|Nemve1|206717|fgenesh1_pg.scaffold_73000012   0.0246   313-339   HIT zinc finger  
jgi|Nemve1|224323|fgenesh1_pg.scaffold_4399000001   0.0122   2-19   MYND zinc finger  
jgi|Nemve1|236351|estExt_fgenesh1_kg.C_50007   0.0173   92-122   MYND zinc finger  
jgi|Nemve1|28266|gw.199.55.1   0.000152   109-138   HIT zinc finger  

Hydra vulgaris has 11 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|221114682|ref|XP_002156368.1|   0.0000157   117-152   HIT zinc finger  
gi|221129887|ref|XP_002159103.1|   0.00000012   352-391   MYND zinc finger  
gi|449669894|ref|XP_002157768.2|   0.00000000000244   9-55   MYND zinc finger  
gi|449672885|ref|XP_002160254.2|   0.00000131   258-308   MYND zinc finger  
gi|449674603|ref|XP_002156339.2|   0.00000000166   335-384   MYND zinc finger  
gi|449680801|ref|XP_002161723.2|   0.000000000000227   380-424   MYND zinc finger  
gi|449685115|ref|XP_002164677.2|   0.00000000134   132-177   MYND zinc finger  
gi|449686514|ref|XP_002164124.2|   0.000000000173   236-282   MYND zinc finger  
gi|449687405|ref|XP_002157954.2|   0.0000000034   6-42   HIT zinc finger  
gi|449688106|ref|XP_004211644.1|   0.0000000000169   104-148   MYND zinc finger  
gi|449690369|ref|XP_004212322.1|   0.000000000000872   10-59   MYND zinc finger  
 
Weak hits:
gi|221101896|ref|XP_002160395.1|   0.0122   9-51   MYND zinc finger  
gi|449677027|ref|XP_002156050.2|   0.0235   147-170   HIT zinc finger  
gi|449680949|ref|XP_004209709.1|   0.0361   86-122   MYND zinc finger  
gi|449681118|ref|XP_002159729.2|   0.000141   266-315   MYND zinc finger  
gi|449686608|ref|XP_002163562.2|   0.00575   96-119   HIT zinc finger  
gi|449690894|ref|XP_004212497.1|   0.00356   3-27   HIT zinc finger  

Amphimedon queenslandica has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
Aqu1.200759|PACid:15699287   0.0000000000628   90-133   MYND zinc finger  
Aqu1.215679|PACid:15714207   0.00000000000262   183-232   MYND zinc finger  
Aqu1.216787|PACid:15715315   0.00000314   1343-1373   MYND zinc finger  
Aqu1.217011|PACid:15715539   0.000000000366   973-1018   MYND zinc finger  
Aqu1.218122|PACid:15716650   0.0000000000301   287-333   MYND zinc finger  
Aqu1.221612|PACid:15720140   0.0000000000192   23-69   MYND zinc finger  
Aqu1.221909|PACid:15720437   0.000000126   425-464   HIT zinc finger  
Aqu1.222243|PACid:15720771   0.0000000000837   146-191   MYND zinc finger  
Aqu1.228416|PACid:15726944   0.000000000162   321-368   MYND zinc finger  
Aqu1.228576|PACid:15727104   0.0000000994   377-409   MYND zinc finger  
 
Weak hits:
Aqu1.201464|PACid:15699992   0.00575   30-68   MYND zinc finger  
Aqu1.222402|PACid:15720930   0.000288   883-913   MYND zinc finger  
Aqu1.226488|PACid:15725016   0.00214   306-337   HIT zinc finger  
Aqu1.227578|PACid:15726106   0.000115   93-127   HIT zinc finger  

Trichoplax adhaerens has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Triad1|27184|e_gw1.6.219.1   0.000000698   145-191   MYND zinc finger  
jgi|Triad1|28394|e_gw1.8.56.1   0.00000192   88-131   MYND zinc finger  
jgi|Triad1|31699|e_gw1.19.171.1   0.000000387   2-38   HIT zinc finger  
jgi|Triad1|52159|fgeneshTA2_pg.C_scaffold_1000906   0.0000162   125-159   HIT zinc finger  
jgi|Triad1|52356|fgeneshTA2_pg.C_scaffold_1001103   0.000000000432   304-350   MYND zinc finger  
jgi|Triad1|53660|fgeneshTA2_pg.C_scaffold_2000817   0.000000000196   443-486   MYND zinc finger  
jgi|Triad1|56945|fgeneshTA2_pg.C_scaffold_5000839   0.0000000000436   662-709   MYND zinc finger  
jgi|Triad1|57374|fgeneshTA2_pg.C_scaffold_6000354   0.00000000000117   15-63   MYND zinc finger  
jgi|Triad1|60207|fgeneshTA2_pg.C_scaffold_14000091   0.00000000802   411-458   MYND zinc finger  
 
Weak hits:
jgi|Triad1|20748|e_gw1.2.1331.1   0.00408   7-51   MYND zinc finger  
jgi|Triad1|23332|e_gw1.3.998.1   0.0235   45-77   MYND zinc finger  
jgi|Triad1|55901|fgeneshTA2_pg.C_scaffold_4000792   0.00131   7-50   MYND zinc finger  

Proterospongia sp. ATCC 50818 has 16 significant domains in 16 proteins.

     

Sequence ID   Evalue   Region   Family  
PTSG_00495T0   0.0000000000000767   166-209   MYND zinc finger  
PTSG_00620T0   0.0000000136   3-36   HIT zinc finger  
PTSG_00738T0   0.00000000366   1184-1231   MYND zinc finger  
PTSG_01155T0   0.00000000105   128-169   MYND zinc finger  
PTSG_01357T0   0.0000000000191   40-76   HIT zinc finger  
PTSG_01403T0   0.000000000167   378-426   MYND zinc finger  
PTSG_02998T0   0.00000000262   1410-1464   MYND zinc finger  
PTSG_03589T0   0.000000209   34-82   MYND zinc finger  
PTSG_04361T0   0.0000000000174   62-115   MYND zinc finger  
PTSG_06022T0   0.000000011   109-148   HIT zinc finger  
PTSG_07000T0   0.00000000872   5-49   MYND zinc finger  
PTSG_07109T0   0.00000593   242-273   HIT zinc finger  
PTSG_08216T0   0.000061   70-106   MYND zinc finger  
PTSG_08610T0   0.000000000000541   18-62   MYND zinc finger  
PTSG_10940T0   0.00000000541   725-768   MYND zinc finger  
PTSG_11508T0   0.000000000349   140-186   MYND zinc finger  
 
Weak hits:
PTSG_02518T0   0.0115   409-430   MYND zinc finger  
PTSG_04458T0   0.011   9-46   MYND zinc finger  
PTSG_10444T0   0.00518   78-96   HIT zinc finger  

Monosiga brevicollis has 17 significant domains in 15 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Monbr1|11753|fgenesh1_pg.scaffold_31000110   0.000000000115   75-109   MYND zinc finger  
jgi|Monbr1|12569|fgenesh1_pg.scaffold_41000029   0.0000000523   29-61   HIT zinc finger  
jgi|Monbr1|23423|fgenesh2_pg.scaffold_4000166   0.0000000000994   82-125   MYND zinc finger  
jgi|Monbr1|25193|fgenesh2_pg.scaffold_9000127   0.00000000000192   336-379   MYND zinc finger  
jgi|Monbr1|27441|fgenesh2_pg.scaffold_19000095   0.0000000353   96-129   MYND zinc finger  
jgi|Monbr1|27776|fgenesh2_pg.scaffold_21000111   0.000000000942   41-93   MYND zinc finger  
jgi|Monbr1|28183|fgenesh2_pg.scaffold_24000072   0.0000000115   33-68   HIT zinc finger  
jgi|Monbr1|36134|estExt_fgenesh1_pg.C_40136   0.00000000134   5-53   MYND zinc finger  
jgi|Monbr1|36570|estExt_fgenesh1_pg.C_60238   0.00000122   136-188   MYND zinc finger  
jgi|Monbr1|37229|estExt_fgenesh1_pg.C_110190   0.00000000889   66-102   HIT zinc finger  
jgi|Monbr1|38343|estExt_fgenesh1_pg.C_230096   0.0000000000366   54-98   MYND zinc finger  
  0.000000000082   263-307   MYND zinc finger  
jgi|Monbr1|6441|fgenesh1_pg.scaffold_4000323   0.000000000924   121-169   MYND zinc finger  
  0.000000174   222-270   MYND zinc finger  
jgi|Monbr1|6462|fgenesh1_pg.scaffold_4000344   0.0000000244   34-77   MYND zinc finger  
jgi|Monbr1|7779|fgenesh1_pg.scaffold_8000206   0.0000000000155   3-47   MYND zinc finger  
jgi|Monbr1|9267|fgenesh1_pg.scaffold_14000173   0.0000000924   17-62   MYND zinc finger  
 
Weak hits:
jgi|Monbr1|17874|estExt_gwp_gw1.C_40058   0.0127   4-46   MYND zinc finger  
jgi|Monbr1|29283|fgenesh2_pg.scaffold_33000033   0.00011   90-121   MYND zinc finger  
jgi|Monbr1|32734|estExt_fgenesh2_pg.C_130014   0.0889   73-122   MYND zinc finger  
jgi|Monbr1|36878|estExt_fgenesh1_pg.C_80232   0.00345   186-229   MYND zinc finger  

Sphaeroforma arctica JP610 has 41 significant domains in 35 proteins.

     

Sequence ID   Evalue   Region   Family  
SARC_01487T0   0.00000209   4-45   MYND zinc finger  
SARC_01767T0   0.00000523   57-100   MYND zinc finger  
SARC_01798T0   0.00000188   30-63   HIT zinc finger  
SARC_01991T0   0.00000000192   14-57   MYND zinc finger  
  0.00000000523   572-614   MYND zinc finger  
SARC_02126T0   0.00000124   4-47   MYND zinc finger  
SARC_02951T0   0.0000000282   150-187   HIT zinc finger  
SARC_03347T0   0.0000419   116-142   MYND zinc finger  
SARC_03741T0   0.00000227   16-61   MYND zinc finger  
SARC_03741T1   0.00000227   16-61   MYND zinc finger  
SARC_04639T0   0.00000000436   107-149   MYND zinc finger  
SARC_04932T0   0.000000924   15-57   MYND zinc finger  
SARC_05018T0   0.00000209   5-46   MYND zinc finger  
SARC_05036T0   0.000000000366   33-81   MYND zinc finger  
  0.000014   194-224   MYND zinc finger  
SARC_05086T0   0.0000000733   11-55   MYND zinc finger  
SARC_05189T0   0.00000942   59-102   MYND zinc finger  
SARC_05264T0   0.00000136   273-314   MYND zinc finger  
SARC_05463T0   0.000000296   6-46   MYND zinc finger  
SARC_05961T0   0.000000645   169-212   MYND zinc finger  
  0.0000244   234-277   MYND zinc finger  
  0.0000296   109-151   MYND zinc finger  
  0.000068   44-87   MYND zinc finger  
SARC_06384T0   0.0000000000331   148-191   MYND zinc finger  
SARC_06507T0   0.0000000715   99-145   MYND zinc finger  
SARC_06529T0   0.0000016   7-48   MYND zinc finger  
SARC_07043T0   0.00000000106   192-237   MYND zinc finger  
SARC_08005T0   0.000000000889   177-221   MYND zinc finger  
SARC_08131T0   0.0000279   4-46   MYND zinc finger  
SARC_08926T0   0.00000296   2-42   MYND zinc finger  
SARC_09895T0   0.00000157   14-58   MYND zinc finger  
SARC_10566T0   0.0000000000872   33-82   MYND zinc finger  
SARC_10788T0   0.0000209   9-53   MYND zinc finger  
SARC_10794T0   0.0000115   174-220   MYND zinc finger  
SARC_11224T0   0.00000000000872   140-186   MYND zinc finger  
SARC_11641T0   0.00000488   8-50   MYND zinc finger  
SARC_12403T0   0.00000384   6-51   MYND zinc finger  
  0.00000698   222-264   MYND zinc finger  
SARC_13192T0   0.0000000000541   136-179   MYND zinc finger  
SARC_13378T0   0.00000698   9-53   MYND zinc finger  
SARC_14353T0   0.00000075   6-49   MYND zinc finger  
 
Weak hits:
SARC_00510T0   0.000811   40-91   MYND zinc finger  
SARC_01072T0   0.000162   8-50   MYND zinc finger  
SARC_02646T0   0.000141   2-47   MYND zinc finger  
SARC_03282T0   0.000124   205-249   MYND zinc finger  
SARC_04932T1   0.000166   9-32   MYND zinc finger  
SARC_05082T0   0.00014   11-54   MYND zinc finger  
SARC_05848T0   0.000152   16-59   MYND zinc finger  
SARC_17695T0   0.00314   10-33   MYND zinc finger  

Capsaspora owczarzaki ATCC 30864 has 18 significant domains in 18 proteins.

     

Sequence ID   Evalue   Region   Family  
CAOG_00016T0   0.00000000082   1466-1503   MYND zinc finger  
CAOG_00050T0   0.000000366   188-221   MYND zinc finger  
CAOG_00340T0   0.00000000000174   143-187   MYND zinc finger  
CAOG_00896T0   0.000061   5-49   MYND zinc finger  
CAOG_02338T0   0.0000000000855   8-44   HIT zinc finger  
CAOG_03053T0   0.000000488   61-117   MYND zinc finger  
CAOG_03079T0   0.0000262   17-53   MYND zinc finger  
CAOG_03954T0   0.00000000331   87-121   MYND zinc finger  
CAOG_04293T0   0.0000000715   1055-1088   MYND zinc finger  
CAOG_05039T0   0.00000209   913-946   MYND zinc finger  
CAOG_05217T0   0.000000000000732   19-66   MYND zinc finger  
CAOG_05313T0   0.00000000000146   1977-2021   MYND zinc finger  
CAOG_05576T0   0.0000497   122-156   HIT zinc finger  
CAOG_05693T0   0.000000000558   1143-1191   MYND zinc finger  
CAOG_05722T0   0.000000000209   943-991   MYND zinc finger  
CAOG_05894T0   0.000000907   834-878   MYND zinc finger  
CAOG_07125T0   0.00000000889   70-107   HIT zinc finger  
CAOG_08256T0   0.00000000134   1118-1166   MYND zinc finger  
 
Weak hits:
CAOG_00772T0   0.00103   20-59   MYND zinc finger  
CAOG_07464T0   0.00183   136-180   MYND zinc finger  

Conidiobolus coronatus NRRL28638 v1.0 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Conco1|14297|gm1.12537_g   0.0000000345   26-61   HIT zinc finger  
jgi|Conco1|45239|estExt_Genewise1.C_10021   0.00000471   81-134   MYND zinc finger  
jgi|Conco1|45366|estExt_Genewise1.C_10166   0.000000146   1-34   HIT zinc finger  
jgi|Conco1|76652|fgenesh1_kg.3_#_3_#_Locus4177v1rpkm13.67   0.0000000000663   138-183   MYND zinc finger  
jgi|Conco1|78081|fgenesh1_kg.47_#_15_#_Locus7920v1rpkm2.29   0.0000000145   73-120   MYND zinc finger  
jgi|Conco1|78161|fgenesh1_kg.50_#_17_#_Locus4027v1rpkm15.08   0.000000384   345-388   MYND zinc finger  
jgi|Conco1|87357|estExt_fgenesh1_pg.C_2820004   0.000000000149   3-39   HIT zinc finger  
 
Weak hits:
jgi|Conco1|77106|fgenesh1_kg.12_#_33_#_Locus2087v1rpkm47.53   0.000401   10-47   MYND zinc finger  

Mortierella verticillata NRRL 6337 has 20 significant domains in 20 proteins.

     

Sequence ID   Evalue   Region   Family  
MVEG_00318T0   0.0000000000732   5-39   HIT zinc finger  
MVEG_00420T0   0.0000000000471   154-198   MYND zinc finger  
MVEG_00444T0   0.0000000523   165-196   MYND zinc finger  
MVEG_00548T0   0.0000152   219-264   HIT zinc finger  
MVEG_02045T0   0.000000000000419   5-48   MYND zinc finger  
MVEG_02594T0   0.00000000148   244-277   MYND zinc finger  
MVEG_03199T0   0.0000000192   408-441   MYND zinc finger  
MVEG_04287T0   0.0000000017   308-355   MYND zinc finger  
MVEG_04558T0   0.000000558   50-108   MYND zinc finger  
MVEG_04645T0   0.0000000152   12-45   HIT zinc finger  
MVEG_04809T0   0.000068   84-137   MYND zinc finger  
MVEG_04860T0   0.00000000732   44-82   HIT zinc finger  
MVEG_05164T0   0.000000068   345-393   MYND zinc finger  
MVEG_05509T0   0.000000192   429-472   MYND zinc finger  
MVEG_05523T0   0.00000000000331   5-51   MYND zinc finger  
MVEG_05795T0   0.00000000715   84-108   MYND zinc finger  
MVEG_07358T0   0.000000645   136-184   MYND zinc finger  
MVEG_07785T0   0.0000000000353   69-110   MYND zinc finger  
MVEG_08350T0   0.00000000000244   5-52   MYND zinc finger  
MVEG_09447T0   0.00000174   170-204   HIT zinc finger  
 
Weak hits:
MVEG_01607T0   0.000785   689-728   MYND zinc finger  
MVEG_03338T0   0.00146   229-264   MYND zinc finger  
MVEG_05101T0   0.00251   53-91   MYND zinc finger  
MVEG_07507T0   0.00227   12-48   MYND zinc finger  
MVEG_09216T0   0.0126   223-245   MYND zinc finger  
MVEG_09322T0   0.00162   12-50   MYND zinc finger  

Phycomyces blakesleeanus has 14 significant domains in 14 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Phybl1|58297|fgeneshPB_pg.1__161   0.0000000942   313-353   MYND zinc finger  
jgi|Phybl1|62985|fgeneshPB_pg.6__206   0.00000000199   3-36   HIT zinc finger  
jgi|Phybl1|65439|fgeneshPB_pg.12__72   0.000000314   108-143   HIT zinc finger  
jgi|Phybl1|66429|fgeneshPB_pg.15__82   0.000000101   382-428   MYND zinc finger  
jgi|Phybl1|66688|fgeneshPB_pg.16__80   0.000000000214   151-188   HIT zinc finger  
jgi|Phybl1|67362|fgeneshPB_pg.18__153   0.0000256   140-189   MYND zinc finger  
jgi|Phybl1|68283|fgeneshPB_pg.22__123   0.000000115   41-88   MYND zinc finger  
jgi|Phybl1|72272|fgeneshPB_pg.51__76   0.000000000134   143-187   MYND zinc finger  
jgi|Phybl1|72368|fgeneshPB_pg.53__37   0.0000000837   21-51   HIT zinc finger  
jgi|Phybl1|75536|estExt_fgeneshPB_pg.C_10414   0.000000000889   446-493   MYND zinc finger  
jgi|Phybl1|76786|estExt_fgeneshPB_pg.C_40338   0.00000000785   415-464   MYND zinc finger  
jgi|Phybl1|79090|estExt_fgeneshPB_pg.C_220080   0.000000523   298-343   MYND zinc finger  
jgi|Phybl1|79705|estExt_fgeneshPB_pg.C_310064   0.000000148   232-277   MYND zinc finger  
jgi|Phybl1|80007|estExt_fgeneshPB_pg.C_390092   0.000000837   54-108   MYND zinc finger  
 
Weak hits:
jgi|Phybl1|57059|fgeneshPB_pm.6__55   0.0384   13-50   MYND zinc finger  
jgi|Phybl1|57330|fgeneshPB_pm.12__16   0.00012   28-80   MYND zinc finger  
jgi|Phybl1|58734|fgeneshPB_pg.1__598   0.00068   52-107   MYND zinc finger  
jgi|Phybl1|70478|fgeneshPB_pg.34__62   0.0876   6-37   MYND zinc finger  
jgi|Phybl1|76518|estExt_fgeneshPB_pg.C_30564   0.00244   8-52   MYND zinc finger  

Rhizopus oryzae RA 99-880 has 17 significant domains in 17 proteins.

     

Sequence ID   Evalue   Region   Family  
RO3T_01357   0.000000000455   2-35   HIT zinc finger  
RO3T_02409   0.00000061   45-92   MYND zinc finger  
RO3T_02578   0.00000105   209-254   MYND zinc finger  
RO3T_02672   0.0000136   219-266   MYND zinc finger  
RO3T_02775   0.0000000384   98-147   MYND zinc finger  
RO3T_08887   0.0000994   141-190   MYND zinc finger  
RO3T_09370   0.000000366   262-303   MYND zinc finger  
RO3T_11557   0.000000401   249-291   MYND zinc finger  
RO3T_12377   0.000000112   179-221   MYND zinc finger  
RO3T_12634   0.000000279   248-293   MYND zinc finger  
RO3T_13694   0.0000000767   49-99   MYND zinc finger  
RO3T_13980   0.00000000235   187-232   MYND zinc finger  
RO3T_14192   0.00000112   45-91   MYND zinc finger  
RO3T_14692   0.000000366   297-338   MYND zinc finger  
RO3T_15318   0.000000000209   393-440   MYND zinc finger  
RO3T_15520   0.000000000174   278-332   MYND zinc finger  
RO3T_15784   0.00000000012   472-516   MYND zinc finger  
 
Weak hits:
RO3T_01768   0.0981   4-33   MYND zinc finger  
RO3T_12282   0.00314   12-30   MYND zinc finger  
RO3T_12361   0.0706   5-34   MYND zinc finger  
RO3T_15392   0.000106   86-138   MYND zinc finger  

Mucor circinelloides has 14 significant domains in 14 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Mucci1|77878|fgeneshMC_pg.2_#_170   0.00000000377   18-52   HIT zinc finger  
jgi|Mucci1|78329|fgeneshMC_pg.2_#_621   0.000000872   46-91   MYND zinc finger  
jgi|Mucci1|78974|fgeneshMC_pg.2_#_1266   0.0000000108   93-141   MYND zinc finger  
jgi|Mucci1|80415|fgeneshMC_pg.3_#_1176   0.000000000732   166-209   MYND zinc finger  
jgi|Mucci1|81251|fgeneshMC_pg.4_#_520   0.0000101   97-130   HIT zinc finger  
jgi|Mucci1|81707|fgeneshMC_pg.4_#_976   0.00000169   144-194   MYND zinc finger  
jgi|Mucci1|83029|fgeneshMC_pg.5_#_986   0.000000133   44-90   MYND zinc finger  
jgi|Mucci1|83179|fgeneshMC_pg.6_#_121   0.000000209   272-317   MYND zinc finger  
jgi|Mucci1|83381|fgeneshMC_pg.6_#_323   0.000000000536   437-485   MYND zinc finger  
jgi|Mucci1|92751|estExt_fgeneshMC_pg.C_70454   0.000000000541   345-398   MYND zinc finger  
jgi|Mucci1|92793|estExt_fgeneshMC_pg.C_70602   0.000000349   315-355   MYND zinc finger  
jgi|Mucci1|92878|estExt_fgeneshMC_pg.C_80162   0.000000593   274-317   MYND zinc finger  
jgi|Mucci1|94680|estExt_fgeneshMC_kg.C_30361   0.000000105   134-177   MYND zinc finger  
jgi|Mucci1|96099|estExt_fgeneshMC_kg.C_130019   0.000000000324   44-84   HIT zinc finger  
 
Weak hits:
jgi|Mucci1|25954|estExt_Genewise1.C_20244   0.00837   100-155   HIT zinc finger  
jgi|Mucci1|40082|e_gw1.5.416.1   0.00436   7-50   MYND zinc finger  
jgi|Mucci1|43483|e_gw1.9.246.1   0.000593   12-49   MYND zinc finger  
jgi|Mucci1|77683|fgeneshMC_pg.1_#_1789   0.000105   2-24   HIT zinc finger  
jgi|Mucci1|79753|fgeneshMC_pg.3_#_514   0.0732   411-437   MYND zinc finger  
jgi|Mucci1|91515|estExt_fgeneshMC_pg.C_40117   0.0576   4-32   MYND zinc finger  

Rhizomucor miehei CAU432 has 12 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
RhzM01726   0.00000000106   141-183   MYND zinc finger  
RhzM01928   0.0000576   304-340   MYND zinc finger  
RhzM02869   0.0000000082   348-399   MYND zinc finger  
RhzM02916   0.00000000392   28-63   HIT zinc finger  
RhzM02941   0.000000000942   432-480   MYND zinc finger  
RhzM03285   0.000012   164-211   MYND zinc finger  
RhzM03443   0.0000277   3-22   HIT zinc finger  
RhzM03807   0.000000541   56-110   MYND zinc finger  
RhzM04157   0.0000000732   43-89   MYND zinc finger  
RhzM06443   0.00000162   109-144   HIT zinc finger  
RhzM07044   0.0000000000837   53-90   HIT zinc finger  
RhzM09045   0.00000506   211-256   MYND zinc finger  
 
Weak hits:
RhzM00462   0.00136   110-165   HIT zinc finger  
RhzM07776   0.0785   4-36   MYND zinc finger  
RhzM08676   0.0061   54-78   MYND zinc finger  
RhzM09423   0.0942   5-36   MYND zinc finger  

Malassezia globosa CBS 7966 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|159104598|gb|EDP43487.1|   0.0000000436   431-472   MYND zinc finger  
gi|164659153|ref|XP_001730701.1|   0.0000000436   431-472   MYND zinc finger  

Sporisorium reilianum 22 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
CBQ68348   0.00000000000732   192-248   MYND zinc finger  
CBQ68994   0.000000167   34-68   HIT zinc finger  
CBQ72415   0.0000000157   5-38   HIT zinc finger  
CBQ72969   0.000000126   780-814   MYND zinc finger  
 
Weak hits:
CBQ71212   0.0157   148-199   MYND zinc finger  
CBQ72758   0.00523   173-206   MYND zinc finger  

First Previous   6 7 8 9 10 11 12 13 14 15 16   Next Last
Showing genomes 126 to 150 of 584

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a HIT/MYND zinc finger-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   68004 68004
No Yes Homo sapiens 76_38 Human 103 103
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 21 21
No Yes Gorilla gorilla 76_3.1 Western gorilla 30 30
No Yes Pongo abelii 76_2 Sumatran orangutan 22 22
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 24 24
No Yes Papio anubis 76 Olive baboon 23 23
No Yes Macaca mulatta 76_1 Rhesus monkey 45 45
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 54 54
No Yes Otolemur garnettii 76_3 Small-eared galago 22 22
No Yes Microcebus murinus 76_1 Gray mouse lemur 18 18
No Yes Rattus norvegicus 76_5.0 Norway rat 21 21
No Yes Mus musculus 76_38 House mouse 55 55
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 15 15
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 21 21
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 20 20
No Yes Cavia porcellus 76_3 Domestic guinea pig 20 20
No Yes Oryctolagus cuniculus 76_2 Rabbit 21 21
No Yes Ochotona princeps 76 American pika 16 16
No Yes Tupaia belangeri 76 Northern tree shrew 15 15
No Yes Sus scrofa 76_10.2 Pig 25 25
No Yes Bos taurus 76_3.1 Cattle 21 21
No Yes Ovis aries 76_3.1 Sheep 22 22
No Yes Vicugna pacos 76_1 Alpaca 14 14
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 19 19
No Yes Mustela putorius furo 76_1.0 Domestic ferret 19 19
No Yes Ailuropoda melanoleuca 76_1 Giant panda 25 25
No Yes Canis familiaris 76_3.1 Dog 29 29
No Yes Felis catus 76_6.2 Domestic cat 20 20
No Yes Equus caballus 76_2 Horse 20 20
No Yes Myotis lucifugus 76_2.0 Little brown bat 23 23
No Yes Pteropus vampyrus 76_1 Large flying fox 21 21
No Yes Sorex araneus 76_1 European shrew 11 11
No Yes Erinaceus europaeus 76 Western European hedgehog 14 14
No Yes Procavia capensis 76_1 Cape rock hyrax 19 19
No Yes Loxodonta africana 76_3 African savanna elephant 25 25
No Yes Echinops telfairi 76 Small Madagascar hedgehog 15 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 26 26
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 10 10
No Yes Macropus eugenii 76_1.0 Tammar wallaby 16 16
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 26 26
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 24 24
No Yes Ornithorhynchus anatinus 76_5 Platypus 15 15
No Yes Saccoglossus kowalevskii v3.0   44 40
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 76_2 Turkey 18 18
No Yes Gallus gallus 76_4 Chicken 17 17
No Yes Anas platyrhynchos 76_1.0 Mallard 14 14
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 14 14
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 16 16
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 19 19
No Yes Anolis carolinensis 76_2.0 Green anole 17 17
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 25 25
No Yes Latimeria chalumnae 76_1 Coelacanth 29 29
No Yes Lepisosteus oculatus 76 Spotted gar 26 26
No Yes Gadus morhua 76_1 Atlantic cod 20 20
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 26 26
No Yes Takifugu rubripes 76_4 Torafugu 52 52
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 27 27
No Yes Oryzias latipes 76_1 Japanese medaka 22 22
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 22 22
No Yes Poecilia formosa 76 Amazon molly 22 22
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 26 26
No Yes Astyanax mexicanus 76 Mexican tetra 25 25
No Yes Danio rerio 76_9 Zebrafish 33 33
No Yes Oikopleura dioica   16 16
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 17 17
No Yes Ciona intestinalis 76 Vase tunicate 16 16
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 22 22
No Yes Adineta vaga   38 36
No Yes Octopus bimaculoides 280   56 38
No Yes Crassostrea gigas 22 Pacific oyster 24 22
No Yes Lottia gigantea Owl limpet 22 21
No Yes Helobdella robusta   14 14
No Yes Capitella sp. I   24 24
No Yes Danaus plexippus OGS1.0 Monarch butterfly 20 20
No Yes Heliconius melpomene Postman butterfly 15 15
No Yes Bombyx mori Domestic silkworm 10 10
No Yes Nasonia vitripennis Jewel wasp 29 28
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 28 28
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 82 82
No Yes Linepithema humile v1.1 Argentine ant 21 21
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 20 20
No Yes Solenopsis invicta v.2.2.3 Red fire ant 22 22
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 20 20
No Yes Atta cephalotes v1.1   20 20
No Yes Camponotus floridanus v3.3 Florida carpenter ant 22 22
No Yes Lucilia cuprina Australian sheep blowfly 21 20
No Yes Drosophila grimshawi 1.3   20 20
No Yes Drosophila willistoni 1.3   24 23
No Yes Drosophila pseudoobscura 2.13   25 24
No Yes Drosophila persimilis 1.3   22 21
No Yes Drosophila suzukii   26 24
No Yes Drosophila yakuba 1.3   27 26
No Yes Drosophila simulans 1.3   24 23
No Yes Drosophila sechellia 1.3   24 24
No Yes Drosophila melanogaster 76_5 Fruit fly 39 38
No Yes Drosophila erecta 1.3   23 23
No Yes Drosophila ananassae 1.3   25 25
No Yes Drosophila virilis 1.2   21 21
No Yes Drosophila mojavensis 1.3   21 21
No Yes Megaselia scalaris 22   6 6
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 34 33
No Yes Culex pipiens quinquefasciatus Southern house mosquito 71 70
No Yes Anopheles darlingi 22 American malaria mosquito 15 14
No Yes Anopheles gambiae 49_3j African malaria mosquito 41 40
No Yes Tribolium castaneum 3.0 Red flour beetle 20 20
No Yes Pediculus humanus corporis (Early assembly) Human body louse 18 18
No Yes Acyrthosiphon pisum Pea aphid 16 16
No Yes Rhodnius prolixus 22   17 17
No Yes Daphnia pulex Common water flea 65 64
No Yes Strigamia maritima 22   27 27
No Yes Sarcoptes scabiei   9 9
No Yes Tetranychus urticae Two-spotted spider mite 14 14
No Yes Ixodes scapularis (Preliminary) Black-legged tick 12 12
No Yes Pristionchus pacificus   11 11
No Yes Meloidogyne incognita Southern root-knot nematode 10 10
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   10 10
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 13 13
No Yes Caenorhabditis japonica   12 12
No Yes Caenorhabditis brenneri   19 18
No Yes Caenorhabditis remanei   19 19
No Yes Caenorhabditis elegans 76_235 Roundworm 24 24
No Yes Caenorhabditis briggsae 2   16 16
No Yes Trichinella spiralis 22   9 9
No Yes Hymenolepis microstoma   10 10
No Yes Echinococcus multilocularis   10 10
No Yes Echinococcus granulosus   10 10
No Yes Taenia solium Pork tapeworm 9 9
No Yes Schistosoma mansoni   14 14
No Yes Mnemiopsis leidyi Sea walnut 22 22
No Yes Thelohanellus kitauei   2 2
No Yes Acropora digitifera v1.0   33 28
No Yes Nematostella vectensis 1.0 Starlet sea anemone 21 20
No Yes Hydra vulgaris   11 11
No Yes Amphimedon queenslandica   10 10
No Yes Trichoplax adhaerens   9 9
No Yes Proterospongia sp. ATCC 50818   16 16
No Yes Monosiga brevicollis   17 15
No Yes Sphaeroforma arctica JP610   41 35
No Yes Capsaspora owczarzaki ATCC 30864   18 18
No Yes Conidiobolus coronatus NRRL28638 v1.0   7 7
No Yes Mortierella verticillata NRRL 6337   20 20
No Yes Phycomyces blakesleeanus   14 14
No Yes Rhizopus oryzae RA 99-880   17 17
No Yes Mucor circinelloides   14 14
No Yes Rhizomucor miehei CAU432   12 12
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   4 4
No Yes Ustilago maydis   4 4
No Yes Mixia osmundae IAM 14324 v1.0   7 7
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   6 6
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   6 6
No Yes Melampsora laricis-populina   8 8
No Yes Rhodotorula graminis WP1 v1.0   28 28
No Yes Sporobolomyces roseus IAM 13481   17 16
No Yes Microbotryum violaceum 22   10 10
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   45 45
No Yes Piloderma croceum F 1598 v1.0   97 97
No Yes Serpula lacrymans var. lacrymans S7.9   23 23
No Yes Coniophora puteana   46 45
No Yes Hydnomerulius pinastri v2.0   41 41
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   22 22
No Yes Pisolithus microcarpus 441 v1.0   23 23
No Yes Pisolithus tinctorius Marx 270 v1.0   22 22
No Yes Scleroderma citrinum Foug A v1.0   20 20
No Yes Coprinopsis cinerea okayama7 130 v3   74 73
No Yes Pleurotus ostreatus Oyster mushroom 24 23
No Yes Amanita thiersii Skay4041 v1.0   16 16
No Yes Amanita muscaria Koide v1.0 Fly agaric 24 24
No Yes Galerina marginata v1.0   121 120
No Yes Hebeloma cylindrosporum h7 v2.0   65 65
No Yes Laccaria bicolor S238N-H82   50 49
No Yes Agaricus bisporus var. bisporus   18 18
No Yes Schizophyllum commune   118 116
No Yes Stereum hirsutum FP-91666 SS1 v1.0   103 103
No Yes Heterobasidion annosum   12 12
No Yes Gloeophyllum trabeumv1.0   45 45
No Yes Punctularia strigosozonata v1.0   32 32
No Yes Sebacina vermifera MAFF 305830 v1.0   42 41
No Yes Fomitiporia mediterranea v1.0   12 12
No Yes Tulasnella calospora AL13/4D v1.0   42 42
No Yes Postia placenta   25 25
No Yes Wolfiporia cocos MD-104 SS10 v1.0   24 24
No Yes Fomitopsis pinicolav1.0   57 57
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   57 57
No Yes Phanerochaete chrysosporium RP-78 2.1   25 25
No Yes Dichomitus squalens   35 35
No Yes Trametes versicolor v1.0   91 91
No Yes Tremella mesenterica Witches' butter 5 5
No Yes Daldinia eschscholzii EC12 v1.0   12 12
No Yes Apiospora montagnei NRRL 25634 v1.0   18 18
No Yes Magnaporthe poae ATCC 64411 22   5 5
No Yes Magnaporthe grisea 70-15   10 10
No Yes Podospora anserina   6 6
No Yes Sporotrichum thermophile ATCC 42464   8 8
No Yes Thielavia terrestris NRRL 8126   11 11
No Yes Chaetomium globosum CBS 148.51   7 7
No Yes Neurospora tetrasperma   9 9
No Yes Neurospora discreta FGSC 8579   6 6
No Yes Neurospora crassa OR74A   9 9
No Yes Cryphonectria parasitica Chestnut blight fungus 9 9
No Yes Verticillium albo-atrum VaMs.102   6 6
No Yes Verticillium dahliae VdLs.17   7 7
No Yes Acremonium alcalophilumv 1.0   9 8
No Yes Glomerella graminicola 22   9 9
No Yes Fusarium graminearum   7 7
No Yes Nectria haematococca mpVI   8 8
No Yes Fusarium oxysporum f. sp. lycopersici 4286   10 10
No Yes Fusarium verticillioides 7600   10 10
No Yes Trichoderma asperellum CBS 433.97 v1.0   10 10
No Yes Trichoderma atroviride   11 11
No Yes Trichoderma citrinoviride v1.0   11 11
No Yes Trichoderma reesei 1.2   12 12
No Yes Trichoderma virens Gv29-8   10 10
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   10 10
No Yes Trichoderma harzianum CBS 226.95 v1.0   14 14
No Yes Amorphotheca resinae v1.0 Creosote fungus 10 10
No Yes Botrytis cinerea B05.10   11 11
No Yes Sclerotinia sclerotiorum   7 6
No Yes Blumeria graminis 22   4 4
No Yes Didymella exigua CBS 183.55 v1.0   13 13
No Yes Leptosphaeria maculans 22   8 8
No Yes Setosphaeria turcica v1.0   15 15
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   14 14
No Yes Cochliobolus victoriae FI3 v1.0   15 15
No Yes Cochliobolus carbonum 26-R-13 v1.0   13 13
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 13 13
No Yes Alternaria brassicicola   8 8
No Yes Cochliobolus lunatus m118 v2.0   13 13
No Yes Pyrenophora teres f. teres 22   17 16
No Yes Pyrenophora tritici-repentis   11 11
No Yes Stagonospora nodorum   17 17
No Yes Mycosphaerella graminicola IPO323   26 20
No Yes Zasmidium cellare ATCC 36951 v1.0   23 22
No Yes Dothistroma septosporum   10 10
No Yes Septoria musiva v1.0   9 9
No Yes Mycosphaerella fijiensis CIRAD86   9 9
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   12 12
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   8 8
No Yes Coccidioides immitis RS   9 9
No Yes Ajellomyces dermatitidis SLH14081   5 5
No Yes Histoplasma capsulatum class NAmI strain WU24   6 6
No Yes Microsporum canis CBS 113480   4 4
No Yes Trichophyton equinum CBS 127.97   4 4
No Yes Trichophyton verrucosum HKI 0517   4 4
No Yes Arthroderma benhamiae CBS 112371   3 3
No Yes Trichophyton tonsurans CBS 112818   7 7
No Yes Trichophyton rubrum CBS 118892   7 7
No Yes Uncinocarpus reesii 1704   4 4
No Yes Aspergillus zonatus v1.0   9 9
No Yes Penicillium chrysogenum Wisconsin 54-1255   4 4
No Yes Penicillium chrysogenum v1.0   5 5
No Yes Aspergillus acidus v1.0   6 6
No Yes Aspergillus fumigatus Af293   6 6
No Yes Aspergillus brasiliensis v1.0   9 9
No Yes Aspergillus nidulans FGSC A4   5 5
No Yes Aspergillus sydowii v1.0   10 10
No Yes Aspergillus versicolor v1.0   12 12
No Yes Aspergillus glaucus   8 8
No Yes Aspergillus carbonarius ITEM 5010   12 12
No Yes Neosartorya fischeri NRRL 181   7 7
No Yes Aspergillus terreus NIH2624   8 8
No Yes Aspergillus tubingensis v1.0   8 8
No Yes Aspergillus wentii v1.0   13 13
No Yes Aspergillus oryzae RIB40   6 6
No Yes Aspergillus niger 22   8 8
No Yes Aspergillus niger ATCC 1015   4 4
No Yes Aspergillus flavus NRRL3357   7 7
No Yes Aspergillus clavatus NRRL 1   6 6
No Yes Penicillium marneffei ATCC 18224   11 11
No Yes Tuber melanosporum Mel28 22   5 5
No Yes Tuber melanosporum Vittad Perigord truffle 5 5
No Yes Hansenula polymorpha v2.0   2 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   4 4
No Yes Pichia membranifaciensv1.0   3 3
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   3 3
No Yes Candida dubliniensis CD36   3 3
No Yes Candida tropicalis MYA-3404   3 3
No Yes Candida parapsilosis   4 4
No Yes Candida albicans SC5314   3 3
No Yes Lodderomyces elongisporus NRRL YB-4239   3 3
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   5 5
No Yes Pichia stipitis CBS 6054   4 4
No Yes Candida guilliermondii ATCC 6260   3 3
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   5 5
No Yes Debaromyces hansenii   5 5
No Yes Wickerhamomyces anomalus   4 4
No Yes Pichia pastoris GS115   4 4
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 2
No Yes Yarrowia lipolytica CLIB122   5 5
No Yes Candida lusitaniae ATCC 42720   3 3
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   3 3
No Yes Vanderwaltozyma polyspora DSM 70294   3 3
No Yes Candida glabrata CBS138   3 3
No Yes Kluyveromyces thermotolerans CBS 6340   4 4
No Yes Lachancea kluyveri   4 4
No Yes Kluyveromyces waltii   4 4
No Yes Ashbya gossypii ATCC 10895   3 3
No Yes Zygosaccharomyces rouxii   4 4
No Yes Saccharomyces mikatae MIT   3 3
No Yes Saccharomyces paradoxus MIT   2 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 3 3
No Yes Saccharomyces bayanus MIT   2 2
No Yes Kluyveromyces lactis   3 3
No Yes Schizosaccharomyces cryophilus OY26 22   3 3
No Yes Schizosaccharomyces octosporus yFS286   3 3
No Yes Schizosaccharomyces japonicus yFS275   3 3
No Yes Schizosaccharomyces pombe Fission yeast 3 3
No Yes Catenaria anguillulae PL171 v1.0   15 15
No Yes Allomyces macrogynus ATCC 38327   17 17
No Yes Spizellomyces punctatus DAOM BR117   16 16
No Yes Dictyostelium discoideum   21 21
No Yes Dictyostelium purpureum   14 14
No Yes Entamoeba dispar 1.2   4 4
No Yes Entamoeba invadens 1.2   3 3
No Yes Entamoeba histolytica 1   3 3
No Yes Selaginella moellendorffii   26 26
No Yes Pinus taeda Loblolly pine 7 7
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 26 26
No Yes Theobroma cacao B97-61/B2 v1 Cacao 18 18
No Yes Gossypium raimondii v221   44 44
No Yes Citrus clementina v165   26 26
No Yes Citrus sinensis v154 Sweet orange 26 26
No Yes Thellungiella halophila v173   15 15
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 22 22
No Yes Capsella rubella v183   14 14
No Yes Arabidopsis lyrata Lyrate rockcress 15 15
No Yes Arabidopsis thaliana 10 Thale cress 18 18
No Yes Carica papaya Papaya 14 14
No Yes Medicago truncatula Barrel medic 32 30
No Yes Phaseolus vulgaris v186 French bean 29 25
No Yes Glycine max v109 Soybean 44 43
No Yes Cucumis sativus v122 Cucumber 19 19
No Yes Fragaria vesca Wild strawberry 10 10
No Yes Malus domestica v196 Apple 26 26
No Yes Prunus persica v139 Peach 15 15
No Yes Linum usitatissimum v200 Flax 16 16
No Yes Manihot esculenta v147 Cassava 19 19
No Yes Populus trichocarpa v156 Black cottonwood 24 24
No Yes Vitis vinifera Wine grape 18 18
No Yes Mimulus guttatus v140 Spotted monkey flower 13 13
No Yes Solanum lycopersicum v.2.3 Tomato 13 13
No Yes Solanum tuberosum Potato 12 12
No Yes Actinidia chinensis Hongyang   10 10
No Yes Aquilegia coerulea v195   21 21
No Yes Triticum urartu 22   11 11
No Yes Triticum aestivum 22 Bread wheat 29 29
No Yes Aegilops tauschii 22   7 7
No Yes Brachypodium distachyon Stiff brome 16 16
No Yes Oryza barthii 22 African wild rice 11 11
No Yes Oryza meridionalis 22   15 15
No Yes Oryza glumaepatula 22   19 19
No Yes Oryza glaberrima African rice 9 9
No Yes Oryza punctata 22   15 15
No Yes Oryza nivara 22   22 22
No Yes Oryza brachyantha 22 Malo sina 8 8
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 16 16
No Yes Oryza sativa v193 Rice 16 16
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 8 8
No Yes Panicum virgatum v202 Switchgrass 18 18
No Yes Setaria italica v164 Foxtail millet 13 13
No Yes Zea mays subsp. mays Maize 33 33
No Yes Zea mays v181 Maize 36 36
No Yes Sorghum bicolor Sorghum 12 12
No Yes Musa balbisiana Balbis banana 17 17
No Yes Musa acuminata 22 Wild Malaysian banana 27 27
No Yes Amborella trichopoda 22   10 10
No Yes Physcomitrella patens   14 14
No Yes Coccomyxa subellipsoidea sp. C-169 v2   22 21
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella variabilis sp. NC64A   62 62
No Yes Chlorella vulgaris   21 21
No Yes Volvox carteri f. nagariensis   14 14
No Yes Volvox carteri v199   18 18
No Yes Chlamydomonas reinhardtii 4.0   85 85
No Yes Ostreococcus sp. RCC809   5 5
No Yes Ostreococcus lucimarinus CCE9901   6 6
No Yes Ostreococcus tauri   6 6
No Yes Bathycoccus prasinos   7 7
No Yes Micromonas sp. RCC299   21 21
No Yes Micromonas pusilla CCMP1545 v3.0   42 41
No Yes Cyanidioschyzon merolae strain 10D 22   3 3
No Yes Cyanidioschyzon merolae   3 3
No Yes Porphyridium purpureum 02_2012   5 5
No Yes Thecamonas trahens ATCC 50062   20 19
No Yes Bigelowiella natans CCMP2755 22   17 17
No Yes Giardia lamblia 2.3   2 2
No Yes Cyanophora paradoxa   23 22
No Yes Leishmania mexicana 2.4   11 10
No Yes Leishmania major strain Friedlin   11 11
No Yes Leishmania infantum JPCM5 2.4   11 11
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   11 11
No Yes Trypanosoma vivax   8 8
No Yes Trypanosoma cruzi strain CL Brener   8 8
No Yes Trypanosoma congolense 2.4   10 10
No Yes Trypanosoma brucei gambiense v4.1   9 9
No Yes Trypanosoma brucei TREU927 v4.1   9 9
No Yes Ectocarpus siliculosus   20 20
No Yes Aureococcus anophagefferens   63 58
No Yes Albugo laibachii 22   18 18
No Yes Pythium iwayamai DAOM BR242034 22   15 15
No Yes Pythium arrhenomanes ATCC 12531 22   23 23
No Yes Pythium ultimum v1.7-2   19 19
No Yes Pythium aphanidermatum DAOM BR444 22   26 26
No Yes Pythium irregulare DAOM BR486 22   18 18
No Yes Pythium vexans DAOM BR484 22   19 19
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 21 21
No Yes Phytophthora sojae 1.1   25 24
No Yes Phytophthora infestans T30-4   21 21
No Yes Phytophthora capsici   14 14
No Yes Hyaloperonospora arabidopsidis 22   18 18
No Yes Phaeodactylum tricornutumCCAP 1055/1   11 11
No Yes Fragilariopsis cylindrus   157 153
No Yes Thalassiosira pseudonana CCMP1335   8 8
No Yes Perkinsus marinus ATCC 50983   13 13
No Yes Paramecium tetraurelia   33 33
No Yes Tetrahymena thermophila SB210 1   10 10
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Cryptosporidium hominis   2 2
No Yes Cryptosporidium muris   5 5
No Yes Cryptosporidium parvum Iowa II   4 4
No Yes Neospora caninum   6 6
No Yes Toxoplasma gondii VEG   6 6
No Yes Toxoplasma gondii ME49   6 6
No Yes Toxoplasma gondii GT1   6 6
No Yes Babesia bovis T2Bo   6 6
No Yes Theileria parva   2 2
No Yes Theileria annulata   3 3
No Yes Plasmodium falciparum 3D7   6 6
No Yes Plasmodium vivax SaI-1 7.0   5 5
No Yes Plasmodium knowlesi strain H   5 5
No Yes Plasmodium yoelii ssp. yoelii 1   4 4
No Yes Plasmodium chabaudi   5 5
No Yes Plasmodium berghei ANKA   6 6
No Yes Symbiodinium minutum clade B1 v1.2   36 35
No Yes Naegleria gruberi   16 16
No Yes Trichomonas vaginalis   4 4
No Yes Guillardia theta CCMP2712 v1.0   7 7
No Yes Emiliania huxleyi CCMP1516   44 44
No Yes Staphylothermus hellenicus DSM 12710   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 39 39
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 30 29
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 43 42
No Yes Ascaris suum Victoria/Ghent Pig roundworm 12 12
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 19 19
No Yes Cryptococcus neoformans var. grubii H99   3 3
No Yes Cryptococcus neoformans B-3501A   3 3
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   4 4
No Yes Paracoccidioides brasiliensis Pb03   6 6
No Yes Coccidioides posadasii str. Silveira   7 7
No Yes Coccidioides immitis RMSCC 3703   5 5
No Yes Coccidioides immitis RMSCC 2394   9 9
No Yes Coccidioides immitis H538.4   7 7
No Yes Ajellomyces dermatitidis ER-3   4 4
No Yes Histoplasma capsulatum H143   6 6
No Yes Histoplasma capsulatum H88   7 7
No Yes Histoplasma capsulatum G186AR   6 6
No Yes Aspergillus fumigatus A1163   7 7
No Yes Candida albicans WO-1   3 3
No Yes Saccharomyces cerevisiae UC5   3 3
No Yes Saccharomyces cerevisiae PW5   3 3
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   2 2
No Yes Saccharomyces cerevisiae T7   3 3
No Yes Saccharomyces cerevisiae FostersB   2 2
No Yes Saccharomyces cerevisiae FostersO   3 3
No Yes Saccharomyces cerevisiae VL3   3 3
No Yes Saccharomyces cerevisiae Vin13   3 3
No Yes Saccharomyces cerevisiae LalvinQA23   3 3
No Yes Saccharomyces cerevisiae AWRI796   3 3
No Yes Saccharomyces cerevisiae Sigma1278b   3 3
No Yes Saccharomyces cerevisiae W303   3 3
No Yes Saccharomyces cerevisiae JAY291   3 3
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YPS163   2 2
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   2 2
No Yes Saccharomyces cerevisiae YJM789   3 3
No Yes Saccharomyces cerevisiae YJM789   3 3
No Yes Saccharomyces cerevisiae RM11-1a   3 3
No Yes Saccharomyces cerevisiae RM11-1a   3 3
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 3 3
No Yes Schizosaccharomyces pombe 972h-   3 3
No Yes Batrachochytrium dendrobatidis JEL423   8 8
No Yes Batrachochytrium dendrobatidis JAM81   10 10
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 14 14
No Yes Hordeum vulgare 22 Domesticated barley 33 33
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 11 11
No Yes Trypanosoma brucei Lister 427 v4.1   9 9
No Yes Neospora caninum Nc-Liverpool 6.2   6 6
No Yes Plasmodium falciparum HB3   6 6
No Yes Plasmodium falciparum Dd2   4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 106 106
No Yes Homo sapiens (NCBI version) Human 55 55
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 21 21
No Yes Heliconius numata (Incomplete)   3 3
No Yes Loa loa v3.3 (Request) Eye worm 11 11
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 8
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 9 9
No Yes Moniliophthora perniciosa FA553 (Genome survey)   21 21
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   13 13
No Yes Malus x domestica (Duplicate) Apple 26 26
No Yes Ricinus communis (Early assembly) Castor bean 11 11
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   17 17
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 13 13
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 13 13
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 24 24
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 21 21
No Yes Gorilla gorilla 69_3.1 Western gorilla 22 22
No Yes Pongo abelii 69_2 Sumatran orangutan 22 22
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 21 21
No Yes Macaca mulatta 69_1 Rhesus monkey 24 24
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 24 24
No Yes Otolemur garnettii 69_3 Small-eared galago 22 22
No Yes Microcebus murinus 69_1 Gray mouse lemur 18 18
No Yes Rattus norvegicus 69_3.4 Norway rat 20 20
No Yes Mus musculus 69_38 House mouse 22 22
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 15 15
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 21 21
No Yes Cavia porcellus 69_3 Domestic guinea pig 20 20
No Yes Oryctolagus cuniculus 69_2 Rabbit 19 19
No Yes Ochotona princeps 69 American pika 16 16
No Yes Tupaia belangeri 69 Northern tree shrew 15 15
No Yes Sus scrofa 69_10.2 Pig 21 21
No Yes Bos taurus 69_3.1 Cattle 20 20
No Yes Vicugna pacos 69_1 Alpaca 14 14
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 19 19
No Yes Mustela putorius furo 69_1.0 Domestic ferret 19 19
No Yes Ailuropoda melanoleuca 69_1 Giant panda 22 22
No Yes Canis familiaris 69_3.1 Dog 21 21
No Yes Felis catus 69 Domestic cat 16 16
No Yes Equus caballus 69_2 Horse 18 18
No Yes Myotis lucifugus 69_2.0 Little brown bat 19 19
No Yes Pteropus vampyrus 69_1 Large flying fox 21 21
No Yes Sorex araneus 69_1 European shrew 11 11
No Yes Erinaceus europaeus 69 Western European hedgehog 14 14
No Yes Procavia capensis 69_1 Cape rock hyrax 19 19
No Yes Loxodonta africana 69_3 African savanna elephant 18 18
No Yes Echinops telfairi 69 Small Madagascar hedgehog 15 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 13
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 10 10
No Yes Macropus eugenii 69_1.0 Tammar wallaby 16 16
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 17 17
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 20 20
No Yes Ornithorhynchus anatinus 69_5 Platypus 15 15
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 69_2 Turkey 14 14
No Yes Gallus gallus 69_2 Chicken 18 18
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 13 13
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 17 17
No Yes Anolis carolinensis 69_2.0 Green anole 17 17
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 20 20
No Yes Latimeria chalumnae 69_1 Coelacanth 23 23
No Yes Gadus morhua 69_1 Atlantic cod 20 20
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 23 23
No Yes Takifugu rubripes 69_4 Torafugu 21 21
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 20 20
No Yes Oryzias latipes 69_1 Japanese medaka 19 19
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 22 22
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 21 21
No Yes Danio rerio 69_9 Zebrafish 25 25
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 11 11
No Yes Ciona intestinalis 69 Vase tunicate 16 16
No Yes Drosophila melanogaster 69_5 Fruit fly 24 23
No Yes Caenorhabditis elegans 69_215 Roundworm 15 15
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 3 3
No Yes Arabidopsis thaliana 10 Thale cress 14 14
No Yes Core Eukaryotic Genes 458 (CEGMA)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   23618 23408
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   186 186
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1806 1785
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   25833 25508
No Yes Global Ocean Sampling Expedition (GOS)   214 212
No Yes NCBI viral sequences (Viral)   9 9
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   19 19
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   24 24
No Yes TargetDB (Targets)   86 86
No Yes UniProt viral sequences (Viral)   3 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.