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  Home > Genomes > Actinidia chinensis Hongyang > TSP9-like domains


TSP9-like superfamily domain assignments
in
Actinidia chinensis Hongyang

Network of domain occurrence in all genomes

Assignment details

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Actinidia chinensis Hongyang has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Achn171921   2.35e-19   518-584   TSP9-like  

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Select to display   Genome       Domains   Proteins
No Yes ALL   435 435
No Yes Picea abies Norway spruce 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 3 3
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 2 2
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 1 1
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 2 2
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 4 4
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 2 2
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum aestivum 22 Bread wheat 2 2
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   2 2
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 2 2
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 10 10
No Yes Sorghum bicolor Sorghum 2 2
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 4
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   125 125
No Yes STRING v9.0.5 (STRING)   12 12
No Yes Uniprot 2018_03 genome   151 151
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   2 2
No Yes TargetDB (Targets)   3 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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