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  Home > Genomes > Orange domain-like domains in all eukaryotic genomes


Orange domain-like superfamily domain assignments
in
all eukaryotic genomes

Assignment details

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25 selected genomes have 223 significant domains in 223 proteins.

Showing genomes 1 to 25 of 186
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Homo sapiens 76_38 has 20 significant domains in 20 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000232424   2.22e-16   99-149   Hairy Orange domain  
ENSP00000242728   0.00000000000183   125-172   Hairy Orange domain  
ENSP00000256495   0.0000000144   139-181   Hairy Orange domain  
ENSP00000272937   0.000000000314   90-133   Hairy Orange domain  
ENSP00000304595   0.0000000000000392   100-149   Hairy Orange domain  
ENSP00000338272   0.00000000000000981   116-168   Hairy Orange domain  
ENSP00000343464   0.00000000418   167-210   Hairy Orange domain  
ENSP00000346761   0.00000000000000955   112-164   Hairy Orange domain  
ENSP00000357348   0.00000000000000628   111-163   Hairy Orange domain  
ENSP00000357349   0.00000000000000497   65-117   Hairy Orange domain  
ENSP00000361943   0.000000000288   107-159   Hairy Orange domain  
ENSP00000367065   0.0000209   80-123   Hairy Orange domain  
ENSP00000387155   0.000000000314   88-131   Hairy Orange domain  
ENSP00000387343   0.000000000248   61-104   Hairy Orange domain  
ENSP00000393198   0.0000000000000471   126-175   Hairy Orange domain  
ENSP00000422140   0.00000000248   81-124   Hairy Orange domain  
ENSP00000425085   0.0000000000000288   68-117   Hairy Orange domain  
ENSP00000426033   0.00000000235   82-125   Hairy Orange domain  
ENSP00000429705   0.00000000000000392   74-126   Hairy Orange domain  
ENSP00000429792   0.00000000000000523   22-74   Hairy Orange domain  
 
Weak hits:
ENSP00000367714   0.000209   82-121   Hairy Orange domain  
ENSP00000462491   0.051   85-123   Hairy Orange domain  
ENSP00000482150   0.000209   82-121   Hairy Orange domain  

Pan troglodytes 76_2.1.4 has 11 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000000160   0.0000209   81-124   Hairy Orange domain  
ENSPTRP00000000999   0.000000000288   107-159   Hairy Orange domain  
ENSPTRP00000008155   0.00000000000183   125-172   Hairy Orange domain  
ENSPTRP00000027099   2.22e-16   99-149   Hairy Orange domain  
ENSPTRP00000028543   0.00000000235   82-125   Hairy Orange domain  
ENSPTRP00000031710   0.00000000000000628   111-163   Hairy Orange domain  
ENSPTRP00000034843   0.00000000000000981   116-168   Hairy Orange domain  
ENSPTRP00000046048   0.000000000000119   100-149   Hairy Orange domain  
ENSPTRP00000051613   0.0000000144   139-181   Hairy Orange domain  
ENSPTRP00000060240   0.00000000000118   125-172   Hairy Orange domain  
ENSPTRP00000060300   0.000000000000119   100-149   Hairy Orange domain  
 
Weak hits:
ENSPTRP00000040760   0.000209   82-121   Hairy Orange domain  

Gorilla gorilla 76_3.1 has 13 significant domains in 13 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000001308   0.00000000418   167-210   Hairy Orange domain  
ENSGGOP00000001819   0.0000183   80-122   Hairy Orange domain  
ENSGGOP00000002550   0.00000000000000405   31-83   Hairy Orange domain  
ENSGGOP00000008080   0.000000000288   107-159   Hairy Orange domain  
ENSGGOP00000008330   2.22e-16   99-149   Hairy Orange domain  
ENSGGOP00000009725   0.00000000000000981   116-168   Hairy Orange domain  
ENSGGOP00000013070   0.0000000000000589   127-176   Hairy Orange domain  
ENSGGOP00000015118   0.00000000000144   125-172   Hairy Orange domain  
ENSGGOP00000015470   0.0000000144   139-181   Hairy Orange domain  
ENSGGOP00000019508   0.00000000000131   125-172   Hairy Orange domain  
ENSGGOP00000022515   2.09e-16   99-149   Hairy Orange domain  
ENSGGOP00000025033   0.0000262   80-122   Hairy Orange domain  
ENSGGOP00000028461   0.00000000000000837   101-153   Hairy Orange domain  
 
Weak hits:
ENSGGOP00000010026   0.000209   82-121   Hairy Orange domain  
ENSGGOP00000021384   0.000392   77-114   Hairy Orange domain  

Pongo abelii 76_2 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000001740   0.000000000222   107-159   Hairy Orange domain  
ENSPPYP00000002254   0.0000209   80-123   Hairy Orange domain  
ENSPPYP00000004990   0.000000000000732   125-172   Hairy Orange domain  
ENSPPYP00000014900   0.000000000275   71-114   Hairy Orange domain  
ENSPPYP00000015316   0.0000000144   139-181   Hairy Orange domain  
ENSPPYP00000016129   1.2e-16   99-149   Hairy Orange domain  
ENSPPYP00000017027   0.00000000418   165-208   Hairy Orange domain  
ENSPPYP00000019021   0.00000000000000628   111-163   Hairy Orange domain  
ENSPPYP00000020968   0.00000000000000955   112-164   Hairy Orange domain  

Nomascus leucogenys 76_1.0 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000002698   0.00000000000000902   112-164   Hairy Orange domain  
ENSNLEP00000004461   0.0000000144   139-181   Hairy Orange domain  
ENSNLEP00000006409   0.00000000000124   125-172   Hairy Orange domain  
ENSNLEP00000008320   0.00000222   125-151   Hairy Orange domain  
ENSNLEP00000013524   0.00000000418   167-210   Hairy Orange domain  
ENSNLEP00000014533   0.000000000418   58-110   Hairy Orange domain  
ENSNLEP00000016982   0.00000000000000628   111-163   Hairy Orange domain  
ENSNLEP00000023361   0.0000000589   139-181   Hairy Orange domain  
ENSNLEP00000023681   0.0000000144   139-181   Hairy Orange domain  

Papio anubis 76 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000000311   0.00000000000157   125-172   Hairy Orange domain  
ENSPANP00000001122   0.00000000000183   125-172   Hairy Orange domain  
ENSPANP00000002860   2.22e-16   99-149   Hairy Orange domain  
ENSPANP00000003992   0.00000000000000955   112-164   Hairy Orange domain  
ENSPANP00000004495   0.0000000144   139-181   Hairy Orange domain  
ENSPANP00000006179   0.000000000288   107-159   Hairy Orange domain  
ENSPANP00000011068   0.00000000418   167-210   Hairy Orange domain  
ENSPANP00000014879   0.00000000000000628   111-163   Hairy Orange domain  
ENSPANP00000017573   0.0000183   79-123   Hairy Orange domain  
ENSPANP00000019505   0.0000000000000222   100-149   Hairy Orange domain  
 
Weak hits:
ENSPANP00000005280   0.000209   83-122   Hairy Orange domain  

Macaca mulatta 76_1 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000001440   0.00000000418   167-210   Hairy Orange domain  
ENSMMUP00000002418   0.0000000000000183   99-149   Hairy Orange domain  
ENSMMUP00000003681   0.00000000000000981   116-168   Hairy Orange domain  
ENSMMUP00000012417   0.00000000000000628   111-163   Hairy Orange domain  
ENSMMUP00000019149   0.0000000144   139-181   Hairy Orange domain  
ENSMMUP00000024507   0.0000000000115   125-169   Hairy Orange domain  
ENSMMUP00000024815   0.000000000288   107-159   Hairy Orange domain  
ENSMMUP00000030134   0.0000209   80-123   Hairy Orange domain  

Callithrix jacchus 76_3.2.1 has 15 significant domains in 15 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000000271   0.0000248   82-124   Hairy Orange domain  
ENSCJAP00000000739   0.000000000314   90-133   Hairy Orange domain  
ENSCJAP00000000804   0.00000000000000523   22-74   Hairy Orange domain  
ENSCJAP00000000819   0.00000000000000981   116-168   Hairy Orange domain  
ENSCJAP00000004650   0.000000000288   107-159   Hairy Orange domain  
ENSCJAP00000004654   0.000000000288   107-159   Hairy Orange domain  
ENSCJAP00000004656   0.000000000222   58-110   Hairy Orange domain  
ENSCJAP00000006817   0.00000000000000536   111-163   Hairy Orange domain  
ENSCJAP00000010753   0.00000000248   81-124   Hairy Orange domain  
ENSCJAP00000025821   2.09e-16   99-149   Hairy Orange domain  
ENSCJAP00000025826   2.22e-16   99-149   Hairy Orange domain  
ENSCJAP00000029172   0.0000000144   139-181   Hairy Orange domain  
ENSCJAP00000045014   0.000000000314   89-132   Hairy Orange domain  
ENSCJAP00000048892   0.00000000000000981   116-168   Hairy Orange domain  
ENSCJAP00000049810   0.000000000288   75-118   Hairy Orange domain  
 
Weak hits:
ENSCJAP00000004630   0.000432   83-120   Hairy Orange domain  
ENSCJAP00000004635   0.000209   82-121   Hairy Orange domain  

Otolemur garnettii 76_3 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000006455   0.00000000000000955   112-164   Hairy Orange domain  
ENSOGAP00000014272   0.00000000405   166-209   Hairy Orange domain  
ENSOGAP00000018718   0.000000000353   92-135   Hairy Orange domain  
ENSOGAP00000018828   0.0000000127   139-181   Hairy Orange domain  
ENSOGAP00000020815   0.000000000000693   125-172   Hairy Orange domain  
ENSOGAP00000021563   0.000000000353   107-159   Hairy Orange domain  
ENSOGAP00000021966   0.00000000000000863   111-163   Hairy Orange domain  
ENSOGAP00000022362   2.22e-16   99-149   Hairy Orange domain  
 
Weak hits:
ENSOGAP00000019565   0.00114   106-147   Hairy Orange domain  
ENSOGAP00000022598   0.000209   82-121   Hairy Orange domain  

Microcebus murinus 76_1 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000001741   0.00000000000000981   116-168   Hairy Orange domain  
ENSMICP00000010458   0.00000000706   53-95   Hairy Orange domain  
ENSMICP00000011312   2.22e-16   98-148   Hairy Orange domain  
ENSMICP00000012414   0.00000000418   167-210   Hairy Orange domain  
ENSMICP00000012819   0.00000000000000523   110-162   Hairy Orange domain  
ENSMICP00000014262   0.000000667   99-127   Hairy Orange domain  
ENSMICP00000015171   0.000000144   105-153   Hairy Orange domain  
 
Weak hits:
ENSMICP00000000631   0.000209   33-76   Hairy Orange domain  

Rattus norvegicus 76_5.0 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000002346   2.48e-16   104-153   Hairy Orange domain  
ENSRNOP00000009564   0.0000000144   139-181   Hairy Orange domain  
ENSRNOP00000014035   0.0000719   82-121   Hairy Orange domain  
ENSRNOP00000014360   0.00000000248   81-124   Hairy Orange domain  
ENSRNOP00000015537   0.00000000000000589   112-164   Hairy Orange domain  
ENSRNOP00000018718   0.00000000000000811   111-163   Hairy Orange domain  
ENSRNOP00000020928   0.000000000209   107-159   Hairy Orange domain  
ENSRNOP00000062516   0.000000275   69-120   Hairy Orange domain  
ENSRNOP00000063598   0.00000000034   100-143   Hairy Orange domain  
ENSRNOP00000064008   0.00000000000497   126-172   Hairy Orange domain  
 
Weak hits:
ENSRNOP00000018769   0.000222   82-121   Hairy Orange domain  

Mus musculus 76_38 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000019924   0.00000000000000811   111-163   Hairy Orange domain  
ENSMUSP00000023171   2.22e-16   99-149   Hairy Orange domain  
ENSMUSP00000030782   0.0000641   79-122   Hairy Orange domain  
ENSMUSP00000032194   0.0000000157   140-181   Hairy Orange domain  
ENSMUSP00000032386   0.00000000000523   126-172   Hairy Orange domain  
ENSMUSP00000038014   0.00000000000000929   112-164   Hairy Orange domain  
ENSMUSP00000040576   0.000000000314   107-159   Hairy Orange domain  
ENSMUSP00000054823   0.00000000248   81-124   Hairy Orange domain  
ENSMUSP00000084062   0.000000000314   90-133   Hairy Orange domain  
 
Weak hits:
ENSMUSP00000051118   0.000222   82-121   Hairy Orange domain  
ENSMUSP00000139086   0.0471   60-86   Hairy Orange domain  

Dipodomys ordii 76_1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000002167   0.000000000288   90-133   Hairy Orange domain  
ENSDORP00000006473   0.000000017   139-181   Hairy Orange domain  
ENSDORP00000008451   0.00000000000000432   111-163   Hairy Orange domain  
ENSDORP00000009071   0.00000000000000615   2-53   Hairy Orange domain  
ENSDORP00000013908   1.7e-16   99-149   Hairy Orange domain  

Ictidomys tridecemlineatus 76_2 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000000711   0.000000017   138-180   Hairy Orange domain  
ENSSTOP00000002785   0.000000000000126   100-147   Hairy Orange domain  
ENSSTOP00000008121   0.00000000248   81-124   Hairy Orange domain  
ENSSTOP00000009354   0.000000000222   58-110   Hairy Orange domain  
ENSSTOP00000012221   0.0000209   83-124   Hairy Orange domain  
ENSSTOP00000018169   0.00000000000000536   111-163   Hairy Orange domain  
ENSSTOP00000019129   0.00000000000102   125-170   Hairy Orange domain  
ENSSTOP00000020051   2.22e-16   99-149   Hairy Orange domain  
ENSSTOP00000021873   0.000000000314   90-133   Hairy Orange domain  
ENSSTOP00000022866   0.00000000000000955   112-164   Hairy Orange domain  
 
Weak hits:
ENSSTOP00000021535   0.000196   86-125   Hairy Orange domain  

Heterocephalus glaber v1.7-2 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000232424   2.22e-16   99-149   Hairy Orange domain  
HGL_H00000242728   0.000000000000759   125-172   Hairy Orange domain  
HGL_H00000256495   0.000000034   139-181   Hairy Orange domain  
HGL_H00000338272   0.00000000000000667   116-168   Hairy Orange domain  
HGL_H00000343464-1   0.00000000235   82-125   Hairy Orange domain  
HGL_H00000343464-2   0.00000000314   81-124   Hairy Orange domain  
HGL_H00000357341-3   0.000000000000654   134-182   Hairy Orange domain  
HGL_H00000361943   0.000000000288   107-159   Hairy Orange domain  
 
Weak hits:
HGL_H00000272937   0.0011   1-30   Hairy Orange domain  

Cavia porcellus 76_3 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000000626   0.000000000314   107-159   Hairy Orange domain  
ENSCPOP00000003621   0.00000000301   57-99   Hairy Orange domain  
ENSCPOP00000007667   0.00000000000000654   112-164   Hairy Orange domain  
ENSCPOP00000014311   0.0000288   81-122   Hairy Orange domain  
ENSCPOP00000015574   2.09e-16   99-149   Hairy Orange domain  
ENSCPOP00000015658   0.00000196   125-153   Hairy Orange domain  
ENSCPOP00000018532   0.000000000288   90-133   Hairy Orange domain  
ENSCPOP00000019257   0.00000000248   81-124   Hairy Orange domain  
ENSCPOP00000021078   0.00000000000000549   108-160   Hairy Orange domain  
 
Weak hits:
ENSCPOP00000016873   0.000379   83-121   Hairy Orange domain  

Oryctolagus cuniculus 76_2 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000000482   0.000000000275   79-131   Hairy Orange domain  
ENSOCUP00000001116   0.0000732   80-123   Hairy Orange domain  
ENSOCUP00000008149   0.00000000183   44-87   Hairy Orange domain  
ENSOCUP00000013040   0.0000000183   138-180   Hairy Orange domain  
ENSOCUP00000014239   0.0000000000000183   264-316   Hairy Orange domain  
ENSOCUP00000022035   0.00000000017   99-134   Hairy Orange domain  
 
Weak hits:
ENSOCUP00000027193   0.000968   112-136   Hairy Orange domain  

Ochotona princeps 76 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000000663   0.0000000144   141-183   Hairy Orange domain  
ENSOPRP00000002805   0.00000000000000981   116-168   Hairy Orange domain  
ENSOPRP00000005457   0.00000000889   155-198   Hairy Orange domain  
ENSOPRP00000006126   2.22e-16   99-149   Hairy Orange domain  
ENSOPRP00000008808   0.00000000000101   125-172   Hairy Orange domain  
ENSOPRP00000013567   0.000000000798   71-114   Hairy Orange domain  
ENSOPRP00000015258   0.0000000000732   3-54   Hairy Orange domain  

Tupaia belangeri 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000000965   0.000000000275   80-132   Hairy Orange domain  
ENSTBEP00000007666   0.00000000000000484   111-163   Hairy Orange domain  
ENSTBEP00000008950   0.00000000000000562   116-168   Hairy Orange domain  

Sus scrofa 76_10.2 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000003657   0.0000196   80-122   Hairy Orange domain  
ENSSSCP00000004561   0.00000000000000536   111-163   Hairy Orange domain  
ENSSSCP00000006570   0.00000000000000955   112-164   Hairy Orange domain  
ENSSSCP00000012294   0.0000000157   139-181   Hairy Orange domain  
ENSSSCP00000017316   0.000000000314   90-133   Hairy Orange domain  
ENSSSCP00000020055   0.00000000000248   125-172   Hairy Orange domain  
ENSSSCP00000021543   0.0000000000000366   100-149   Hairy Orange domain  
ENSSSCP00000024380   0.000000000196   107-159   Hairy Orange domain  
ENSSSCP00000025182   2.22e-16   99-149   Hairy Orange domain  

Bos taurus 76_3.1 has 12 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000000742   2.22e-16   99-149   Hairy Orange domain  
ENSBTAP00000001214   0.00000000000000379   111-163   Hairy Orange domain  
ENSBTAP00000011453   0.000000000288   108-160   Hairy Orange domain  
ENSBTAP00000013008   0.0000000157   139-181   Hairy Orange domain  
ENSBTAP00000013017   0.000000000314   90-133   Hairy Orange domain  
ENSBTAP00000019570   0.00000000235   82-125   Hairy Orange domain  
ENSBTAP00000019571   0.000000000000275   100-148   Hairy Orange domain  
ENSBTAP00000020864   0.00000000000000955   112-164   Hairy Orange domain  
ENSBTAP00000028261   0.00000772   80-123   Hairy Orange domain  
ENSBTAP00000040772   0.0000000000017   125-172   Hairy Orange domain  
ENSBTAP00000054651   0.00000000000235   125-172   Hairy Orange domain  
ENSBTAP00000056047   2.48e-16   99-149   Hairy Orange domain  
 
Weak hits:
ENSBTAP00000003221   0.000222   83-122   Hairy Orange domain  

Ovis aries 76_3.1 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000008201   0.00000000235   82-125   Hairy Orange domain  
ENSOARP00000008413   0.0000000157   139-181   Hairy Orange domain  
ENSOARP00000008493   0.0000000000000863   111-159   Hairy Orange domain  
ENSOARP00000008651   0.00000000000000929   112-164   Hairy Orange domain  
ENSOARP00000021440   0.00000000000128   125-172   Hairy Orange domain  
ENSOARP00000021567   0.000000000288   108-160   Hairy Orange domain  
ENSOARP00000021934   1.83e-16   99-149   Hairy Orange domain  
 
Weak hits:
ENSOARP00000019397   0.000222   83-122   Hairy Orange domain  

Vicugna pacos 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000002126   0.00000000000111   2-47   Hairy Orange domain  
ENSVPAP00000009345   0.000000000222   58-110   Hairy Orange domain  

Tursiops truncatus 76_1 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000000077   0.0000000000000366   2-53   Hairy Orange domain  
ENSTTRP00000001590   2.22e-16   99-149   Hairy Orange domain  
ENSTTRP00000002159   0.00000000418   164-207   Hairy Orange domain  
ENSTTRP00000002613   0.0000000126   89-131   Hairy Orange domain  
ENSTTRP00000005968   0.0000017   5-48   Hairy Orange domain  
ENSTTRP00000009430   0.000000196   90-132   Hairy Orange domain  
ENSTTRP00000012511   0.0000000000000327   32-80   Hairy Orange domain  
ENSTTRP00000013605   0.000000000124   107-159   Hairy Orange domain  
ENSTTRP00000013748   0.00000000000301   125-172   Hairy Orange domain  
ENSTTRP00000015497   0.000000000379   118-162   Hairy Orange domain  
 
Weak hits:
ENSTTRP00000003550   0.0017   83-113   Hairy Orange domain  

Mustela putorius furo 76_1.0 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000001843   0.00000000000000955   112-164   Hairy Orange domain  
ENSMPUP00000003614   2.22e-16   99-149   Hairy Orange domain  
ENSMPUP00000011047   0.00000000248   82-125   Hairy Orange domain  
ENSMPUP00000013811   0.0000000000000628   100-149   Hairy Orange domain  
ENSMPUP00000014305   0.000000000288   107-159   Hairy Orange domain  
ENSMPUP00000016923   0.0000000157   139-181   Hairy Orange domain  
 
Weak hits:
ENSMPUP00000006815   0.000196   78-123   Hairy Orange domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   10452 10452
No Yes Homo sapiens 76_38 Human 20 20
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 11
No Yes Gorilla gorilla 76_3.1 Western gorilla 13 13
No Yes Pongo abelii 76_2 Sumatran orangutan 9 9
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 9 9
No Yes Papio anubis 76 Olive baboon 10 10
No Yes Macaca mulatta 76_1 Rhesus monkey 8 8
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 15 15
No Yes Otolemur garnettii 76_3 Small-eared galago 8 8
No Yes Microcebus murinus 76_1 Gray mouse lemur 7 7
No Yes Rattus norvegicus 76_5.0 Norway rat 10 10
No Yes Mus musculus 76_38 House mouse 9 9
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 5 5
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 10 10
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 8
No Yes Cavia porcellus 76_3 Domestic guinea pig 9 9
No Yes Oryctolagus cuniculus 76_2 Rabbit 6 6
No Yes Ochotona princeps 76 American pika 7 7
No Yes Tupaia belangeri 76 Northern tree shrew 3 3
No Yes Sus scrofa 76_10.2 Pig 9 9
No Yes Bos taurus 76_3.1 Cattle 12 12
No Yes Ovis aries 76_3.1 Sheep 7 7
No Yes Vicugna pacos 76_1 Alpaca 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 10 10
No Yes Mustela putorius furo 76_1.0 Domestic ferret 6 6
No Yes Ailuropoda melanoleuca 76_1 Giant panda 9 9
No Yes Canis familiaris 76_3.1 Dog 10 10
No Yes Felis catus 76_6.2 Domestic cat 8 8
No Yes Equus caballus 76_2 Horse 8 8
No Yes Myotis lucifugus 76_2.0 Little brown bat 6 6
No Yes Pteropus vampyrus 76_1 Large flying fox 9 9
No Yes Sorex araneus 76_1 European shrew 2 2
No Yes Erinaceus europaeus 76 Western European hedgehog 6 6
No Yes Procavia capensis 76_1 Cape rock hyrax 4 4
No Yes Loxodonta africana 76_3 African savanna elephant 8 8
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 7 7
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 8 8
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 8 8
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 10 10
No Yes Ornithorhynchus anatinus 76_5 Platypus 10 10
No Yes Saccoglossus kowalevskii v3.0   11 11
No Yes Petromyzon marinus 76_7.0 Sea lamprey 5 5
No Yes Meleagris gallopavo 76_2 Turkey 6 6
No Yes Gallus gallus 76_4 Chicken 7 7
No Yes Anas platyrhynchos 76_1.0 Mallard 11 11
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 9 9
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 9 9
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 11 11
No Yes Anolis carolinensis 76_2.0 Green anole 11 11
No Yes Xenopus laevis African clawed frog 30 30
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 17 17
No Yes Latimeria chalumnae 76_1 Coelacanth 17 17
No Yes Lepisosteus oculatus 76 Spotted gar 13 13
No Yes Gadus morhua 76_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 13 13
No Yes Takifugu rubripes 76_4 Torafugu 25 25
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 24 24
No Yes Oryzias latipes 76_1 Japanese medaka 13 13
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 14 14
No Yes Poecilia formosa 76 Amazon molly 14 14
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 15 15
No Yes Astyanax mexicanus 76 Mexican tetra 14 14
No Yes Danio rerio 76_9 Zebrafish 15 15
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 6 6
No Yes Adineta vaga   4 4
No Yes Octopus bimaculoides 280   6 6
No Yes Crassostrea gigas 22 Pacific oyster 13 13
No Yes Lottia gigantea Owl limpet 14 14
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   12 12
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 6
No Yes Heliconius melpomene Postman butterfly 7 7
No Yes Bombyx mori Domestic silkworm 6 6
No Yes Nasonia vitripennis Jewel wasp 4 4
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 21 21
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 9 9
No Yes Linepithema humile v1.1 Argentine ant 8 8
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 8
No Yes Solenopsis invicta v.2.2.3 Red fire ant 8 8
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 9 9
No Yes Atta cephalotes v1.1   8 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 8 8
No Yes Lucilia cuprina Australian sheep blowfly 12 10
No Yes Drosophila grimshawi 1.3   8 8
No Yes Drosophila willistoni 1.3   10 10
No Yes Drosophila pseudoobscura 2.13   10 10
No Yes Drosophila persimilis 1.3   10 10
No Yes Drosophila suzukii   15 12
No Yes Drosophila yakuba 1.3   10 10
No Yes Drosophila simulans 1.3   11 11
No Yes Drosophila sechellia 1.3   11 11
No Yes Drosophila melanogaster 76_5 Fruit fly 14 14
No Yes Drosophila erecta 1.3   10 10
No Yes Drosophila ananassae 1.3   11 11
No Yes Drosophila virilis 1.2   10 10
No Yes Drosophila mojavensis 1.3   10 10
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 7 7
No Yes Culex pipiens quinquefasciatus Southern house mosquito 6 6
No Yes Anopheles darlingi 22 American malaria mosquito 4 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 5 5
No Yes Tribolium castaneum 3.0 Red flour beetle 7 7
No Yes Pediculus humanus corporis (Early assembly) Human body louse 7 7
No Yes Acyrthosiphon pisum Pea aphid 10 10
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 7 7
No Yes Strigamia maritima 22   11 11
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 6 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 6 6
No Yes Trichinella spiralis 22   4 4
No Yes Hymenolepis microstoma   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 2 2
No Yes Acropora digitifera v1.0   6 6
No Yes Nematostella vectensis 1.0 Starlet sea anemone 6 6
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   3 3
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 29 29
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 12 12
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 5 5
No Yes Homo sapiens 75_37 (old version GRC) Human 21 21
No Yes Homo sapiens (NCBI version) Human 13 13
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 9 9
No Yes Homo sapiens 69_37 Human 10 10
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 10 10
No Yes Gorilla gorilla 69_3.1 Western gorilla 9 9
No Yes Pongo abelii 69_2 Sumatran orangutan 9 9
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 7 7
No Yes Macaca mulatta 69_1 Rhesus monkey 8 8
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 9 9
No Yes Otolemur garnettii 69_3 Small-eared galago 8 8
No Yes Microcebus murinus 69_1 Gray mouse lemur 7 7
No Yes Rattus norvegicus 69_3.4 Norway rat 9 9
No Yes Mus musculus 69_38 House mouse 9 9
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 5 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 10 10
No Yes Cavia porcellus 69_3 Domestic guinea pig 9 9
No Yes Oryctolagus cuniculus 69_2 Rabbit 7 7
No Yes Ochotona princeps 69 American pika 7 7
No Yes Tupaia belangeri 69 Northern tree shrew 3 3
No Yes Sus scrofa 69_10.2 Pig 9 9
No Yes Bos taurus 69_3.1 Cattle 10 10
No Yes Vicugna pacos 69_1 Alpaca 2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 10 10
No Yes Mustela putorius furo 69_1.0 Domestic ferret 6 6
No Yes Ailuropoda melanoleuca 69_1 Giant panda 9 9
No Yes Canis familiaris 69_3.1 Dog 6 6
No Yes Felis catus 69 Domestic cat 3 3
No Yes Equus caballus 69_2 Horse 8 8
No Yes Myotis lucifugus 69_2.0 Little brown bat 6 6
No Yes Pteropus vampyrus 69_1 Large flying fox 9 9
No Yes Sorex araneus 69_1 European shrew 2 2
No Yes Erinaceus europaeus 69 Western European hedgehog 6 6
No Yes Procavia capensis 69_1 Cape rock hyrax 4 4
No Yes Loxodonta africana 69_3 African savanna elephant 6 6
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 8 8
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 10 10
No Yes Ornithorhynchus anatinus 69_5 Platypus 7 7
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 69_2 Turkey 4 4
No Yes Gallus gallus 69_2 Chicken 7 7
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 8 8
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 11 11
No Yes Anolis carolinensis 69_2.0 Green anole 11 11
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 12 12
No Yes Latimeria chalumnae 69_1 Coelacanth 15 15
No Yes Gadus morhua 69_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 13 13
No Yes Takifugu rubripes 69_4 Torafugu 14 14
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 20 20
No Yes Oryzias latipes 69_1 Japanese medaka 13 13
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 14 14
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 14 14
No Yes Danio rerio 69_9 Zebrafish 12 12
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 11 11
No Yes NCBI 2017_08 genome   4530 4526
No Yes STRING v9.0.5 (STRING)   393 393
No Yes Uniprot 2018_03 genome   3047 3037
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4 4
No Yes TargetDB (Targets)   7 7

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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