SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Variant SAM domain domains in all genomes


Variant SAM domain family domain assignments
in
all genomes

Assignment details

(show help)

25 selected genomes have 63 significant domains in 63 proteins.

Showing genomes 1 to 25 of 122
  1 2 3 4 5   Next Last

Homo sapiens 76_38 has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSP00000255486   6.81e-33   0.0000376   42-114   2h80 A:11-81  
ENSP00000276297   5.65e-33   0.000035   448-515   2dky A:8-85  
ENSP00000338785   5.23e-33   0.0000351   48-122   2h80 A:11-81  
ENSP00000351797   6.28e-34   0.0000155   3-78   2dky A:8-85  
ENSP00000422595   2.32e-34   0.0000327   36-112   2dky A:8-85  
ENSP00000456233   2.92e-34   0.0000383   31-107   2h80 A:11-81  
 
Weak hits:
ENSP00000363727   1.57e-28   0.00026   22-92   2dky A:8-85  
ENSP00000428031   0.000000000628   0.0065   21-50   2dky A:8-85  

Pan troglodytes 76_2.1.4 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPTRP00000009828   6.28e-33   0.0000376   42-114   2h80 A:11-81  
ENSPTRP00000034252   3.08e-33   0.000035   442-513   2dky A:8-85  
 
Weak hits:
ENSPTRP00000037778   9.95e-21   0.00078   8-62   2dky A:8-85  

Gorilla gorilla 76_3.1 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSGGOP00000006257   5.23e-33   0.0000351   48-122   2h80 A:11-81  
ENSGGOP00000014710   6.28e-33   0.000035   448-515   2dky A:8-85  
ENSGGOP00000024744   5.58e-33   0.000029   2-70   2dky A:8-85  
 
Weak hits:
ENSGGOP00000011807   3.87e-29   0.00023   22-92   2dky A:8-85  
ENSGGOP00000022326   3.38e-29   0.00023   22-92   2dky A:8-85  

Pongo abelii 76_2 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPPYP00000006004   4.71e-33   0.0000351   48-122   2h80 A:11-81  
ENSPPYP00000020587   4.4e-32   0.0000362   438-503   2dky A:8-85  
 
Weak hits:
ENSPPYP00000022868   3.87e-29   0.00023   22-92   2dky A:8-85  

Nomascus leucogenys 76_1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSNLEP00000002562   4.08e-33   0.0000344   446-515   2dky A:8-85  
 
Weak hits:
ENSNLEP00000000819   3.87e-29   0.00023   22-92   2dky A:8-85  

Papio anubis 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPANP00000004926   4.19e-33   0.0000351   48-122   2h80 A:11-81  
ENSPANP00000005326   1.99e-33   0.0000153   3-78   2dky A:8-85  
 
Weak hits:
ENSPANP00000000384   7.18e-29   0.0002   33-102   2dky A:8-85  

Macaca mulatta 76_1 has 7 significant domains in 7 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMMUP00000019851   6.28e-33   0.000035   448-515   2dky A:8-85  
ENSMMUP00000019852   6.63e-34   0.0000165   3-78   2dky A:8-85  
ENSMMUP00000022438   5.23e-33   0.0000351   48-122   2h80 A:11-81  
ENSMMUP00000022439   9.68e-33   0.0000376   43-114   2h80 A:11-81  
ENSMMUP00000022442   1.44e-34   0.0000351   47-122   2h80 A:11-81  
ENSMMUP00000032221   2.32e-34   0.0000327   36-112   2dky A:8-85  
ENSMMUP00000036429   5.23e-33   0.0000351   48-122   2h80 A:11-81  
 
Weak hits:
ENSMMUP00000020053   2.88e-29   0.0002   22-92   2dky A:8-85  

Callithrix jacchus 76_3.2.1 has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSCJAP00000022111   1.35e-33   0.0000321   4-78   2dky A:8-85  
ENSCJAP00000034126   5.23e-33   0.0000351   48-122   2h80 A:11-81  
ENSCJAP00000042014   1.44e-34   0.0000351   47-122   2h80 A:11-81  
ENSCJAP00000043345   5.23e-33   0.0000351   48-122   2h80 A:11-81  
ENSCJAP00000049242   7.14e-33   0.0000383   42-114   2h80 A:11-81  
ENSCJAP00000052349   6.28e-33   0.000035   448-515   2dky A:8-85  
 
Weak hits:
ENSCJAP00000003161   2.66e-28   0.00025   22-92   2dky A:8-85  

Otolemur garnettii 76_3 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOGAP00000006002   5.71e-31   0.0000524   1-66   2h80 A:11-81  
ENSOGAP00000011392   6.98e-33   0.0000388   449-516   2dky A:8-85  
ENSOGAP00000021283   3.41e-34   0.0000362   36-112   2dky A:8-85  
 
Weak hits:
ENSOGAP00000009333   1.1e-28   0.00021   2-67   2dky A:8-85  

Microcebus murinus 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMICP00000005687   1.2e-32   0.0000424   48-122   2h80 A:11-81  
 
Weak hits:
ENSMICP00000004011   4.49e-30   0.00019   7-77   2dky A:8-85  
ENSMICP00000011780   2.88e-16   0.00069   107-152   2dky A:8-85  

Rattus norvegicus 76_5.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSRNOP00000001446   1.47e-33   0.0000441   48-122   2h80 A:11-81  
ENSRNOP00000014923   4.58e-32   0.0000339   2-70   2dky A:8-85  

Mus musculus 76_38 has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMUSP00000033923   6.91e-33   0.0000212   3-78   2dky A:8-85  
ENSMUSP00000053232   1.5e-33   0.0000441   48-122   2h80 A:11-81  
ENSMUSP00000096425   1.57e-33   0.0000417   36-112   2dky A:8-85  
ENSMUSP00000106109   1.47e-33   0.0000441   48-122   2h80 A:11-81  
ENSMUSP00000122468   1.84e-36   0.0000481   31-107   2h80 A:11-81  
ENSMUSP00000132812   2.62e-32   0.0000432   461-529   2dky A:8-85  
 
Weak hits:
ENSMUSP00000116705   4.04e-28   0.00014   31-96   2h80 A:11-81  

Dipodomys ordii 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSDORP00000000255   8.17e-33   0.0000408   444-511   2dky A:8-85  
ENSDORP00000013989   1.76e-32   0.0000424   48-122   2h80 A:11-81  
 
Weak hits:
ENSDORP00000005373   1.18e-29   0.00022   25-92   2dky A:8-85  

Ictidomys tridecemlineatus 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSTOP00000004667   1.26e-32   0.0000453   5-73   2dky A:8-85  

Heterocephalus glaber v1.7-2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
HGL_H00000276297   7.33e-33   0.0000408   9-76   2dky A:8-85  
 
Weak hits:
HGL_H00000338785   0.000000000000612   0.00032   13-55   2h80 A:11-81  
HGL_H00000363727   4.59e-30   0.00022   3-71   2dky A:8-85  

Cavia porcellus 76_3 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSCPOP00000005394   1.37e-32   0.0000376   48-122   2h80 A:11-81  
ENSCPOP00000011417   4.08e-33   0.0000408   14-83   2dky A:8-85  

Oryctolagus cuniculus 76_2 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOCUP00000010151   1.01e-33   0.0000448   110-186   2h80 A:11-81  
ENSOCUP00000020170   5.34e-33   0.0000179   3-78   2dky A:8-85  
 
Weak hits:
ENSOCUP00000009279   1.5e-30   0.00021   33-102   2dky A:8-85  

Ochotona princeps 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOPRP00000009312   5.76e-33   0.0000351   48-122   2h80 A:11-81  
ENSOPRP00000011558   6.28e-33   0.0000408   106-174   2dky A:8-85  
 
Weak hits:
ENSOPRP00000009169   4.08e-31   0.0002   21-92   2dky A:8-85  

Tupaia belangeri 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSTBEP00000008296   5.97e-32   0.000056   446-513   2dky A:8-85  
 
Weak hits:
ENSTBEP00000012698   9.14e-24   0.00011   48-108   2h80 A:11-81  

Sus scrofa 76_10.2 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSSCP00000007430   3.01e-33   0.0000408   7-77   2dky A:8-85  
ENSSSCP00000022032   6.91e-33   0.0000408   70-137   2dky A:8-85  

Bos taurus 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSBTAP00000020664   4.5e-34   0.0000423   28-104   2dky A:8-85  
ENSBTAP00000029081   1.23e-32   0.0000424   48-122   2h80 A:11-81  

Ovis aries 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOARP00000010455   1.88e-32   0.0000453   448-515   2dky A:8-85  
ENSOARP00000011553   3.84e-31   0.0000463   1-66   2h80 A:11-81  
 
Weak hits:
ENSOARP00000015825   7.38e-30   0.00019   14-85   2dky A:8-85  

Vicugna pacos 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSVPAP00000006434   9.77e-33   0.0000418   448-515   2dky A:8-85  

Tursiops truncatus 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSTTRP00000003730   6.28e-33   0.0000408   445-512   2dky A:8-85  
ENSTTRP00000011803   1.2e-32   0.0000424   48-122   2h80 A:11-81  
 
Weak hits:
ENSTTRP00000005603   1.83e-30   0.0002   23-92   2dky A:8-85  

Mustela putorius furo 76_1.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMPUP00000001874   2.07e-32   0.0000463   46-120   2h80 A:11-81  
ENSMPUP00000011440   9.77e-33   0.0000388   448-514   2dky A:8-85  
 
Weak hits:
ENSMPUP00000004533   1.48e-30   0.00018   36-105   2dky A:8-85  

  1 2 3 4 5   Next Last
Showing genomes 1 to 25 of 122

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Variant SAM domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   2328 2328
No Yes Homo sapiens 76_38 Human 6 6
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 3 3
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 7 7
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 76_3 Small-eared galago 3 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 6 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 4 4
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 2 2
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 4 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 4 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 76_2.0 Green anole 2 2
No Yes Xenopus laevis African clawed frog 3 3
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 3 3
No Yes Lepisosteus oculatus 76 Spotted gar 4 4
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 76_4 Torafugu 7 7
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 4 4
No Yes Oryzias latipes 76_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 3 3
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danio rerio 76_9 Zebrafish 7 7
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Homo sapiens 75_37 (old version GRC) Human 6 6
No Yes Homo sapiens (NCBI version) Human 4 4
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 2 2
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 2 2
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 2 2
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 69_1 Coelacanth 3 3
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Oryzias latipes 69_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 3 3
No Yes Danio rerio 69_9 Zebrafish 3 3
No Yes NCBI 2017_08 genome   1376 1376
No Yes STRING v9.0.5 (STRING)   48 48
No Yes Uniprot 2018_03 genome   484 484
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   9 9
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.