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  Home > Genomes > PMT central region-like domains in all bacterial genomes


PMT central region-like superfamily domain assignments
in
all bacterial genomes

Network of domain occurrence in all genomes

Assignment details

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22 selected genomes have 32 significant domains in 25 proteins.


Flexibacter litoralis DSM 6794 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|392399465|ref|YP_006436066.1|   0.0000034   7-153   PMT central region-like  

Aeromonas hydrophila subsp. hydrophila ATCC 7966 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|117618727|ref|YP_855898.1|   9.68e-95   3080-3346   PMT central region-like  

Vibrio anguillarum 775 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336123969|ref|YP_004566017.1|   2.88e-32   1885-2022   PMT central region-like  
  1.83e-29   2036-2156   PMT central region-like  

Vibrio vulnificus MO6-24/O has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|320158794|ref|YP_004191172.1|   2.09e-62   2364-2607   PMT central region-like  

Vibrio cholerae O395 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|147673063|ref|YP_001217005.1|   6.8e-57   651-894   PMT central region-like  

Photorhabdus asymbiotica has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|253989578|ref|YP_003040934.1|   6.41e-94   34-308   PMT central region-like  

Photorhabdus luminescens subsp. laumondii TTO1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|37526301|ref|NP_929645.1|   3.66e-102   59-332   PMT central region-like  

Xenorhabdus bovienii SS-2004 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|290474141|ref|YP_003467018.1|   3.27e-39   2386-2628   PMT central region-like  

Xenorhabdus nematophila ATCC 19061 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|300722358|ref|YP_003711644.1|   4.71e-89   2965-3235   PMT central region-like  
  3.79e-39   2415-2657   PMT central region-like  

Proteus mirabilis HI4320 has 3 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|197283919|ref|YP_002149791.1|   3.4e-45   663-933   PMT central region-like  
gi|197285892|ref|YP_002151764.1|   4.05e-70   1986-2229   PMT central region-like  
  5.1e-68   2661-2904   PMT central region-like  

Pasteurella multocida subsp. multocida str. HN06 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383311704|ref|YP_005364514.1|   1.44e-113   577-872   PMT central region-like  
 
Weak hits:
gi|383311457|ref|YP_005364267.1|   0.0523   187-265   PMT central region-like  

Vibrio anguillarum Listonella anguillarum M3 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|537454079|ref|YP_008487847.1|   3.01e-32   2067-2204   PMT central region-like  
  1.96e-29   2218-2338   PMT central region-like  

Vibrio vulnificus CMCP6 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|27366913|ref|NP_762440.1|   6.02e-107   3580-3853   PMT central region-like  
  1.16e-63   2364-2607   PMT central region-like  

Vibrio vulnificus YJ016 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|37676690|ref|NP_937086.1|   3.4e-106   3580-3853   PMT central region-like  
  1.44e-63   2364-2607   PMT central region-like  

Vibrio cholerae LMA3984-4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384424556|ref|YP_005633914.1|   8.76e-57   2548-2791   PMT central region-like  

Vibrio cholerae M66-2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|227081623|ref|YP_002810174.1|   1.31e-56   2561-2804   PMT central region-like  

Vibrio cholerae O395 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|147673063|ref|YP_001217005.1|   6.8e-57   651-894   PMT central region-like  

Vibrio cholerae IEC224 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|379741246|ref|YP_005333215.1|   1.31e-56   2548-2791   PMT central region-like  

Vibrio cholerae O1 str. 2010EL-1786 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|360035346|ref|YP_004937109.1|   1.31e-56   2548-2791   PMT central region-like  

Vibrio cholerae MJ-1236 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|229607977|ref|YP_002878625.1|   6.67e-57   633-876   PMT central region-like  

Vibrio cholerae O1 biovar El Tor str. N16961 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|15641462|ref|NP_231094.1|   1.31e-56   2561-2804   PMT central region-like  

Proteus mirabilis BB2000 has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|529235887|ref|YP_008396746.1|   8.76e-46   663-933   PMT central region-like  
gi|529235890|ref|YP_008396749.1|   1.44e-21   675-912   PMT central region-like  
gi|529237784|ref|YP_008398643.1|   6.54e-70   301-544   PMT central region-like  
  3.01e-68   976-1219   PMT central region-like  

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Add assignments from groups of genomes

View all assignments containing a PMT central region-like domain in each group of genomes.

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Add assignments from individual genomes

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Select to display   Genome       Domains   Proteins
No Yes ALL   1390 1390
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Vibrio anguillarum 775   2 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Xenorhabdus nematophila ATCC 19061   2 1
No Yes Proteus mirabilis HI4320   3 2
No Yes Pasteurella multocida subsp. multocida str. HN06   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Vibrio vulnificus CMCP6   2 1
No Yes Vibrio vulnificus YJ016   2 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Proteus mirabilis BB2000   4 3
No Yes NCBI 2017_08 genome   973 889
No Yes STRING v9.0.5 (STRING)   14 11
No Yes Uniprot 2018_03 genome   311 273
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   20 20
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   16 16
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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