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NEAT domain-like superfamily domain assignments
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SCOP2 SCOPe CATH ECOD

Assignment details

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SCOP2 SCOPe CATH ECOD (all domain sequ) has 155 significant domains in 155 proteins.

     

Sequence ID   Evalue   Region   Family  
000001609|e2o6pA1|11.1.1.135|A:2-123   7.19e-36   5-118   NEAT domain  
000001610|e2iteA1|11.1.1.135|A:7-127   5.23e-38   3-119   NEAT domain  
000001611|e2h3kA1|11.1.1.135|A:1-144   2.49e-39   2-143   NEAT domain  
000033721|e2o6pB1|11.1.1.135|B:2-119   1.09e-35   5-117   NEAT domain  
000033722|e2iteB1|11.1.1.135|B:7-127   5.23e-38   3-119   NEAT domain  
000033723|e2itfD1|11.1.1.135|D:7-127   5.23e-38   3-119   NEAT domain  
000033724|e2itfC1|11.1.1.135|C:7-127   5.23e-38   3-119   NEAT domain  
000033725|e2itfA1|11.1.1.135|A:7-127   5.23e-38   3-119   NEAT domain  
000033726|e2o1aA1|11.1.1.135|A:18-138   5.23e-38   3-119   NEAT domain  
000033727|e2itfB1|11.1.1.135|B:7-127   5.23e-38   3-119   NEAT domain  
000142820|e3qugA1|11.1.1.135|A:5-118   6.54e-29   3-110   NEAT domain  
000143275|e3rtlA1|11.1.1.135|A:1-116   2.22e-30   4-111   NEAT domain  
000144611|e3ovuB1|11.1.1.135|B:19-162   8.24e-39   4-144   NEAT domain  
000149008|e3sz6A1|11.1.1.135|A:6-121   8.76e-40   2-116   NEAT domain  
000149675|e3sikA1|11.1.1.135|A:1-132   2.49e-59   9-127   SCOPe  
000166806|e2e7dA1|11.1.1.135|A:9-124   7.72e-29   4-112   NEAT domain  
000168727|e2k78A1|11.1.1.135|A:22-147   8.11e-36   9-122   NEAT domain  
000182455|e3qzlA1|11.1.1.135|A:7-127   3.4e-37   3-119   NEAT domain  
000222548|e4h8qA1|11.1.1.135|A:11-129   1.96e-48   1-117   NEAT domain  
000334835|e2e7dB1|11.1.1.135|B:11-122   9.94e-29   3-109   NEAT domain  
000346141|e2z6fA1|11.1.1.135|A:11-122   9.94e-29   3-109   NEAT domain  
000416326|e3qugB1|11.1.1.135|B:5-117   8.05e-29   3-110   SCOPe  
000416327|e3quhA1|11.1.1.135|A:6-117   9.94e-29   3-109   NEAT domain  
000416328|e3quhB1|11.1.1.135|B:6-117   9.94e-29   3-109   NEAT domain  
000419769|e3rtlB1|11.1.1.135|B:1-120   1.83e-30   4-112   NEAT domain  
000419770|e3rtlC1|11.1.1.135|C:1-120   1.83e-30   4-112   NEAT domain  
000419771|e3rtlD1|11.1.1.135|D:1-118   2.49e-30   4-111   NEAT domain  
000419787|e3rurA1|11.1.1.135|A:3-117   4.84e-30   3-109   NEAT domain  
000419788|e3rurB1|11.1.1.135|B:1-117   2.35e-30   4-111   NEAT domain  
000419789|e3rurC1|11.1.1.135|C:2-118   4.05e-30   3-110   NEAT domain  
000419790|e3rurD1|11.1.1.135|D:2-116   3.79e-30   3-110   NEAT domain  
000428119|e3qzmA1|11.1.1.135|A:4-127   1.05e-37   6-122   NEAT domain  
000428120|e3qzmB1|11.1.1.135|B:5-127   1.01e-37   5-121   NEAT domain  
000428121|e3qznA1|11.1.1.135|A:7-127   5.1e-36   3-119   NEAT domain  
000428122|e3qznB1|11.1.1.135|B:7-127   5.1e-36   3-119   NEAT domain  
000428123|e3qznC1|11.1.1.135|C:7-127   5.1e-36   3-119   NEAT domain  
000428124|e3qzoA1|11.1.1.135|A:7-127   5.23e-38   3-119   NEAT domain  
000428125|e3qzoB1|11.1.1.135|B:7-127   5.23e-38   3-119   NEAT domain  
000428126|e3qzoC1|11.1.1.135|C:5-127   3.92e-38   5-121   NEAT domain  
000428127|e3qzoD1|11.1.1.135|D:4-127   4.05e-38   6-122   NEAT domain  
000428128|e3qzpA1|11.1.1.135|A:4-127   4.05e-38   6-122   NEAT domain  
000428129|e3qzpB1|11.1.1.135|B:3-127   3.4e-38   6-123   NEAT domain  
000428915|e3szkF1|11.1.1.135|F:24-164   1.31e-38   2-140   NEAT domain  
000428916|e3szkC1|11.1.1.135|C:21-164   2.49e-39   2-143   NEAT domain  
000987779|e3sz6B1|11.1.1.135|B:1-118   3.14e-39   3-118   NEAT domain  
000987780|e3sikB1|11.1.1.135|B:1-123   1.7e-39   7-123   NEAT domain  
000990896|e4h8pA1|11.1.1.135|A:1-118   3.66e-45   7-118   NEAT domain  
001005021|e3vtmA1|11.1.1.135|A:1-113   8.05e-29   3-110   SCOPe  
001007419|e4fc3E1|11.1.1.135|E:21-164   1.96e-41   7-144   NEAT domain  
001016347|e3vtmB1|11.1.1.135|B:1-113   8.05e-29   3-110   SCOPe  
001063888|e3vuaA1|11.1.1.135|A:5-119   7.98e-29   3-111   NEAT domain  
001063889|e3vuaB1|11.1.1.135|B:5-118   6.54e-29   3-110   NEAT domain  
001063890|e3vuaC1|11.1.1.135|C:5-118   6.54e-29   3-110   NEAT domain  
001063891|e3vuaD1|11.1.1.135|D:5-118   6.54e-29   3-110   NEAT domain  
001063892|e3vuaE1|11.1.1.135|E:5-117   8.05e-29   3-110   SCOPe  
001063893|e3vuaF1|11.1.1.135|F:5-117   8.05e-29   3-110   SCOPe  
001125473|e4ij2F1|11.1.1.135|F:2-140   1.7e-41   2-139   NEAT domain  
001137422|e4ij2F3|11.1.1.135|F:220-331   1.05e-26   3-109   NEAT domain  
001139685|e4ij2E1|11.1.1.135|E:2-140   1.7e-41   2-139   NEAT domain  
001139686|e4ij2E2|11.1.1.135|E:220-331   1.05e-26   3-109   NEAT domain  
001139696|e4ij2H1|11.1.1.135|H:2-140   1.7e-41   2-139   NEAT domain  
001219094|e3s48A2|11.1.1.135|A:22-164   5.23e-39   2-142   NEAT domain  
001219095|e3s48B2|11.1.1.135|B:22-162   1.7e-38   2-141   NEAT domain  
001299702|e2moqA1|11.1.1.135|A:16-163   3.27e-37   3-141   NEAT domain  
001386848|e4ij2G3|11.1.1.135|G:218-331   7.98e-27   4-111   NEAT domain  
001392863|e4ij2G2|11.1.1.135|G:2-140   1.7e-41   2-139   NEAT domain  
001401678|e4mypA1|11.1.1.135|A:2-122   2.49e-35   2-119   NEAT domain  
001401679|e4mypB1|11.1.1.135|B:6-122   2.88e-34   1-115   NEAT domain  
001401709|e4nlaA1|11.1.1.135|A:1-122   8.05e-45   2-122   SCOPe  
001412361|e4wjgD1|11.1.1.135|D:3-146   2.49e-39   2-143   NEAT domain  
001412362|e4wjgI1|11.1.1.135|I:3-146   2.49e-39   2-143   NEAT domain  
001412363|e4wjgN1|11.1.1.135|N:3-146   2.49e-39   2-143   NEAT domain  
001412364|e4wjgS1|11.1.1.135|S:3-146   2.49e-39   2-143   NEAT domain  
001412365|e4wjgX1|11.1.1.135|X:3-146   2.49e-39   2-143   NEAT domain  
001412366|e4wjg31|11.1.1.135|3:3-146   2.49e-39   2-143   NEAT domain  
001557679|e4xs0C1|11.1.1.135|C:2-140   4.19e-41   2-139   NEAT domain  
001557681|e4xs0C3|11.1.1.135|C:199-331   6.54e-29   3-130   NEAT domain  
001833860|e2q7aA1|11.1.1.96|A:1-152   0.00000351   45-127   SCOPe  
001835797|e2q7aB1|11.1.1.96|B:1-152   0.00000351   45-127   SCOPe  
001866823|e4ympA1|11.1.1.135|A:12-130   1.7e-28   4-117   NEAT domain  
001866824|e4ympC1|11.1.1.135|C:14-130   2.22e-28   4-115   NEAT domain  
001870687|e5d1qE1|11.1.1.135|E:1-118   1.96e-30   4-111   NEAT domain  
001870697|e5d1xE1|11.1.1.135|E:1-115   4.84e-30   3-109   NEAT domain  
001885734|e5d1zI1|11.1.1.135|I:7-155   3.4e-37   9-147   NEAT domain  
001885735|e5d1zJ1|11.1.1.135|J:7-155   3.4e-37   9-147   NEAT domain  
d2e7da_   7.72e-29   4-112   NEAT domain  
d2e7db_   9.94e-29   3-109   NEAT domain  
d2h3ka1   2.49e-39   2-143   NEAT domain  
d2itea1   5.23e-38   3-119   NEAT domain  
d2iteb_   5.23e-38   3-119   NEAT domain  
d2itfa_   5.23e-38   3-119   NEAT domain  
d2itfb_   5.23e-38   3-119   NEAT domain  
d2itfc_   5.23e-38   3-119   NEAT domain  
d2itfd_   3.92e-38   5-121   NEAT domain  
d2k78a_   8.11e-36   9-122   NEAT domain  
d2moqa_   3.27e-37   3-141   NEAT domain  
d2o1aa1   4.71e-38   4-120   NEAT domain  
d2o6pa1   6.93e-36   4-117   NEAT domain  
d2o6pb2   1.05e-35   4-116   NEAT domain  
d2z6fa_   9.94e-29   3-109   NEAT domain  
d3ovub1   7.72e-39   2-142   NEAT domain  
d3quga_   8.05e-29   3-110   SCOPe  
d3qugb_   8.05e-29   3-110   SCOPe  
d3quha_   9.94e-29   3-109   NEAT domain  
d3quhb_   9.94e-29   3-109   NEAT domain  
d3qzla_   3.4e-37   3-119   NEAT domain  
d3qzma1   1.01e-37   5-121   NEAT domain  
d3qzmb_   1.01e-37   5-121   NEAT domain  
d3qzna_   5.1e-36   3-119   NEAT domain  
d3qznb_   5.1e-36   3-119   NEAT domain  
d3qznc_   5.1e-36   3-119   NEAT domain  
d3qzoa_   5.23e-38   3-119   NEAT domain  
d3qzob_   5.23e-38   3-119   NEAT domain  
d3qzoc_   3.92e-38   5-121   NEAT domain  
d3qzod1   3.92e-38   5-121   NEAT domain  
d3qzpa1   3.92e-38   5-121   NEAT domain  
d3qzpb1   3.92e-38   5-121   NEAT domain  
d3rtla1   6.15e-30   3-109   NEAT domain  
d3rtlb1   3.88e-30   3-110   SCOPe  
d3rtlc1   3.88e-30   3-110   SCOPe  
d3rtld1   4.97e-30   3-109   NEAT domain  
d3rura_   4.84e-30   3-109   NEAT domain  
d3rurb1   4.84e-30   3-109   NEAT domain  
d3rurc1   4.97e-30   3-109   NEAT domain  
d3rurd1   4.58e-30   3-109   NEAT domain  
d3s48a_   5.23e-39   2-142   NEAT domain  
d3s48b_   1.7e-38   2-141   NEAT domain  
d3sika_   1.23e-41   2-123   NEAT domain  
d3sikb_   2.09e-41   2-122   NEAT domain  
d3sz6a_   8.76e-40   2-116   NEAT domain  
d3sz6b_   8.76e-40   2-116   NEAT domain  
d3szkc_   2.49e-39   2-143   NEAT domain  
d3szkf_   1.31e-38   2-140   NEAT domain  
d3vtma_   8.05e-29   3-110   SCOPe  
d3vtmb_   8.05e-29   3-110   SCOPe  
d3vuaa_   7.98e-29   3-111   NEAT domain  
d3vuab_   6.54e-29   3-110   NEAT domain  
d3vuac_   6.54e-29   3-110   NEAT domain  
d3vuad_   6.54e-29   3-110   NEAT domain  
d3vuae_   8.05e-29   3-110   SCOPe  
d3vuaf_   8.05e-29   3-110   SCOPe  
d4fc3e_   1.96e-41   7-144   NEAT domain  
d4h8pa_   7.06e-48   1-116   NEAT domain  
d4h8qa_   1.96e-48   1-117   NEAT domain  
d4mypa_   2.49e-35   2-119   NEAT domain  
d4mypb_   2.88e-34   1-115   NEAT domain  
d4nlaa1   2.49e-35   2-119   NEAT domain  
d4wjg3_   2.49e-39   2-143   NEAT domain  
d4wjgd_   2.49e-39   2-143   NEAT domain  
d4wjgi_   2.49e-39   2-143   NEAT domain  
d4wjgn_   2.49e-39   2-143   NEAT domain  
d4wjgs_   2.49e-39   2-143   NEAT domain  
d4wjgx_   2.49e-39   2-143   NEAT domain  
d4ympa_   1.7e-28   4-117   NEAT domain  
d4ympc_   2.22e-28   4-115   NEAT domain  
d5d1zi_   3.4e-37   9-147   NEAT domain  
d5d1zj_   3.4e-37   9-147   NEAT domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   83174 83174
No Yes Aspergillus zonatus v1.0   7 4
No Yes Ruminococcus sp.   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   11 5
No Yes [Ruminococcus] obeum   1 1
No Yes [Ruminococcus] torques   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Roseburia intestinalis   1 1
No Yes Clostridium novyi NT   8 4
No Yes Clostridium tetani E88   8 2
No Yes Clostridium perfringens ATCC 13124   5 2
No Yes Leuconostoc kimchii IMSNU 11154   3 2
No Yes Lactobacillus crispatus ST1   1 1
No Yes Lactobacillus fermentum IFO 3956   4 2
No Yes Lactobacillus buchneri NRRL B-30929   3 2
No Yes Lactobacillus buchneri   3 2
No Yes Lactobacillus brevis ATCC 367   4 3
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus pyogenes str. Manfredo   1 1
No Yes Paenibacillus sp. JDR-2   6 4
No Yes Paenibacillus terrae HPL-003   11 4
No Yes Paenibacillus polymyxa M1   13 4
No Yes Listeria welshimeri serovar 6b str. SLCC5334   4 2
No Yes Listeria innocua Clip11262   4 2
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   4 2
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   4 2
No Yes Listeria ivanovii subsp. ivanovii PAM 55   4 2
No Yes Solibacillus silvestris StLB046   3 2
No Yes Lysinibacillus sphaericus C3-41   5 3
No Yes Bacillus halodurans C-125   6 2
No Yes Bacillus weihenstephanensis KBAB4   11 6
No Yes Bacillus thuringiensis str. Al Hakam   9 5
No Yes Bacillus cereus 03BB102   8 4
No Yes Bacillus anthracis str. A0248   8 4
No Yes Bacillus clausii KSM-K16   5 2
No Yes Staphylococcus lugdunensis HKU09-01   12 8
No Yes Staphylococcus aureus subsp. aureus JH1   7 4
No Yes Staphylococcus aureus   7 4
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium tetani genome 12124569   8 2
No Yes Clostridium perfringens SM101   5 2
No Yes Clostridium perfringens str. 13   5 2
No Yes Clostridium botulinum BKT015925   13 5
No Yes Clostridium botulinum E3 str. Alaska E43   6 1
No Yes Carnobacterium maltaromaticum LMA28   5 2
No Yes Lactobacillus fermentum F-6   4 2
No Yes Lactobacillus fermentum CECT 5716   3 1
No Yes Lactobacillus brevis KB290   4 3
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   2 1
No Yes Streptococcus equi subsp. zooepidemicus MGCS10565   1 1
No Yes Streptococcus equi subsp. zooepidemicus   2 1
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis RE378   1 1
No Yes Streptococcus iniae SF1   2 1
No Yes Streptococcus pyogenes HSC5   1 1
No Yes Streptococcus pyogenes A20   1 1
No Yes Streptococcus pyogenes MGAS1882   1 1
No Yes Streptococcus pyogenes MGAS15252   1 1
No Yes Streptococcus pyogenes Alab49   1 1
No Yes Streptococcus pyogenes MGAS10750   1 1
No Yes Streptococcus pyogenes MGAS10270   2 1
No Yes Streptococcus pyogenes MGAS2096   1 1
No Yes Streptococcus pyogenes MGAS9429   1 1
No Yes Streptococcus pyogenes MGAS6180   1 1
No Yes Streptococcus pyogenes NZ131   1 1
No Yes Streptococcus pyogenes MGAS8232   2 1
No Yes Streptococcus pyogenes MGAS10394   2 1
No Yes Streptococcus pyogenes MGAS315   1 1
No Yes Streptococcus pyogenes SSI-1   1 1
No Yes Streptococcus pyogenes M1 476   1 1
No Yes Streptococcus pyogenes MGAS5005   1 1
No Yes Streptococcus pyogenes M1 GAS   1 1
No Yes Paenibacillus polymyxa CR1   3 3
No Yes Paenibacillus polymyxa SC2   13 4
No Yes Paenibacillus polymyxa E681   10 4
No Yes Listeria monocytogenes EGD sequence   4 2
No Yes Listeria monocytogenes N53-1   4 2
No Yes Listeria monocytogenes La111   4 2
No Yes Listeria monocytogenes serotype 4b str. LL195   4 2
No Yes Listeria monocytogenes 07PF0776   4 2
No Yes Listeria monocytogenes M7   4 2
No Yes Listeria monocytogenes J1-220   4 2
No Yes Listeria monocytogenes J1816   4 2
No Yes Listeria monocytogenes SLCC2376   4 2
No Yes Listeria monocytogenes SLCC5850   4 2
No Yes Listeria monocytogenes ATCC 19117   4 2
No Yes Listeria monocytogenes L312   4 2
No Yes Listeria monocytogenes SLCC2479   4 2
No Yes Listeria monocytogenes SLCC7179   4 2
No Yes Listeria monocytogenes SLCC2540   4 2
No Yes Listeria monocytogenes SLCC2378   4 2
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   4 2
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   4 2
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   4 2
No Yes Listeria monocytogenes 08-5578   4 2
No Yes Listeria monocytogenes 08-5923   4 2
No Yes Listeria monocytogenes L99   4 2
No Yes Listeria monocytogenes HCC23   4 2
No Yes Listeria monocytogenes 10403S   4 2
No Yes Listeria monocytogenes J0161   4 2
No Yes Listeria monocytogenes Finland 1998   4 2
No Yes Listeria monocytogenes FSL R2-561   4 2
No Yes Listeria monocytogenes serotype 4b str. F2365   4 2
No Yes Listeria monocytogenes EGD-e   4 2
No Yes Bacillus toyonensis BCT-7112   9 5
No Yes Bacillus thuringiensis HD-771   9 5
No Yes Bacillus thuringiensis HD-789   9 5
No Yes Bacillus thuringiensis MC28   9 5
No Yes Bacillus thuringiensis serovar chinensis CT-43   9 5
No Yes Bacillus thuringiensis YBT-1518   9 5
No Yes Bacillus thuringiensis Bt407   9 6
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   9 5
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   8 5
No Yes Bacillus thuringiensis BMB171   9 5
No Yes Bacillus thuringiensis serovar finitimus YBT-020   10 5
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   9 5
No Yes Bacillus cereus FRI-35   9 5
No Yes Bacillus cereus biovar anthracis str. CI   11 7
No Yes Bacillus cereus AH820   9 5
No Yes Bacillus cereus AH187   9 5
No Yes Bacillus cereus B4264   9 5
No Yes Bacillus cereus G9842   9 5
No Yes Bacillus cereus Q1   9 5
No Yes Bacillus cereus F837/76   9 5
No Yes Bacillus cereus NC7401   9 5
No Yes Bacillus cereus E33L   9 5
No Yes Bacillus cereus ATCC 14579   8 4
No Yes Bacillus cereus ATCC 10987   9 5
No Yes Bacillus anthracis str. H9401   12 8
No Yes Bacillus anthracis str. CDC 684   12 8
No Yes Bacillus anthracis str. 'Ames Ancestor'   10 6
No Yes Bacillus anthracis str. Sterne   9 5
No Yes Bacillus anthracis str. Ames   9 5
No Yes Staphylococcus aureus subsp. aureus MSHR1132   7 4
No Yes Staphylococcus lugdunensis N920143   6 4
No Yes Staphylococcus aureus CA-347   7 4
No Yes Staphylococcus aureus Bmb9393   7 4
No Yes Staphylococcus aureus M1   7 4
No Yes Staphylococcus aureus 08BA02176   7 4
No Yes Staphylococcus aureus ST228/18412   7 4
No Yes Staphylococcus aureus ST228/18341   7 4
No Yes Staphylococcus aureus ST228/16125   7 4
No Yes Staphylococcus aureus ST228/16035   7 4
No Yes Staphylococcus aureus ST228/15532   7 4
No Yes Staphylococcus aureus ST228/10497   7 4
No Yes Staphylococcus aureus ST228/10388   7 4
No Yes Staphylococcus aureus 04-02981   7 4
No Yes Staphylococcus aureus RF122   7 5
No Yes Staphylococcus aureus subsp. aureus Z172   7 4
No Yes Staphylococcus aureus subsp. aureus 6850   7 4
No Yes Staphylococcus aureus subsp. aureus SA957   7 4
No Yes Staphylococcus aureus subsp. aureus CN1   7 4
No Yes Staphylococcus aureus subsp. aureus SA40   7 4
No Yes Staphylococcus aureus subsp. aureus 11819-97   7 4
No Yes Staphylococcus aureus subsp. aureus M013   7 4
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   5 3
No Yes Staphylococcus aureus subsp. aureus VC40   7 4
No Yes Staphylococcus aureus subsp. aureus T0131   7 4
No Yes Staphylococcus aureus subsp. aureus LGA251   7 4
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   7 4
No Yes Staphylococcus aureus subsp. aureus JKD6159   7 4
No Yes Staphylococcus aureus subsp. aureus ED133   7 4
No Yes Staphylococcus aureus subsp. aureus ED98   7 4
No Yes Staphylococcus aureus subsp. aureus TW20   7 4
No Yes Staphylococcus aureus subsp. aureus 55/2053   7 4
No Yes Staphylococcus aureus subsp. aureus TCH60   7 4
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   7 4
No Yes Staphylococcus aureus subsp. aureus 71193   7 4
No Yes Staphylococcus aureus subsp. aureus S0385   7 4
No Yes Staphylococcus aureus subsp. aureus str. Newman   7 4
No Yes Staphylococcus aureus subsp. aureus Mu3   7 4
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   5 3
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   7 4
No Yes Staphylococcus aureus subsp. aureus JH9   7 4
No Yes Staphylococcus aureus subsp. aureus MSSA476   7 4
No Yes Staphylococcus aureus subsp. aureus MRSA252   4 3
No Yes Staphylococcus aureus subsp. aureus MW2   7 4
No Yes Staphylococcus aureus subsp. aureus N315   7 4
No Yes Staphylococcus aureus subsp. aureus Mu50   7 4
No Yes Staphylococcus aureus subsp. aureus COL   7 4
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   7 4
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   6 6
No Yes Fungus garden combined (combined) (meta-genome)   5 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   5 5
No Yes NCBI 2017_08 genome   74238 42390
No Yes STRING v9.0.5 (STRING)   369 205
No Yes Uniprot 2018_03 genome   6870 3853
No Yes NCBI plasmid sequences (Plasmids)   9 8
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   92 85
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   155 155
No Yes TargetDB (Targets)   38 27

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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