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  Home > Genomes > Mib/herc2 domain-like domains in all genomes


Mib/herc2 domain-like superfamily domain assignments
in
all genomes

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25 selected genomes have 179 significant domains in 128 proteins.

Showing genomes 1 to 25 of 243
  1 2 3 4 5 6 7 8 9 10   Next Last

Homo sapiens 76_38 has 31 significant domains in 20 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000261537   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSP00000261609   2.62e-21   1863-1929   Mib/herc2 domain  
ENSP00000348081   3.92e-22   107-180   Mib/herc2 domain  
  4.45e-22   252-326   Mib/herc2 domain  
ENSP00000367980   3.27e-22   6-79   Mib/herc2 domain  
  3.66e-22   151-225   Mib/herc2 domain  
ENSP00000367984   2.48e-22   6-79   Mib/herc2 domain  
  0.0000000109   151-178,226-256   Mib/herc2 domain  
ENSP00000382269   2.22e-22   1268-1336   Mib/herc2 domain  
ENSP00000423221   5.75e-24   5-77   Mib/herc2 domain  
ENSP00000424615   2.88e-22   20-93   Mib/herc2 domain  
  3.14e-22   165-239   Mib/herc2 domain  
ENSP00000425032   9.55e-23   6-79   Mib/herc2 domain  
  1.07e-22   151-225   Mib/herc2 domain  
ENSP00000426103   4.05e-22   121-194   Mib/herc2 domain  
  4.45e-22   266-340   Mib/herc2 domain  
ENSP00000426128   3.53e-22   20-93   Mib/herc2 domain  
  3.92e-22   165-239   Mib/herc2 domain  
ENSP00000426603   1.27e-23   6-79   Mib/herc2 domain  
ENSP00000426865   1.96e-23   6-79   Mib/herc2 domain  
  0.00000115   151-175   Mib/herc2 domain  
ENSP00000427680   3.27e-22   60-134   Mib/herc2 domain  
ENSP00000428264   3.66e-22   121-194   Mib/herc2 domain  
  0.0000000196   266-293,341-371   Mib/herc2 domain  
ENSP00000428660   4.05e-22   121-194   Mib/herc2 domain  
  4.45e-22   266-340   Mib/herc2 domain  
ENSP00000450697   2.22e-22   1268-1336   Mib/herc2 domain  
ENSP00000451860   0.0000000000248   742-792   Mib/herc2 domain  
ENSP00000452233   0.00000000000811   99-138   Mib/herc2 domain  
ENSP00000484981   2.22e-22   1272-1340   Mib/herc2 domain  

Pan troglodytes 76_2.1.4 has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000016856   3.14e-23   144-219   Mib/herc2 domain  
  5.89e-16   11-68   Mib/herc2 domain  
ENSPTRP00000051666   2.48e-21   1764-1830   Mib/herc2 domain  
ENSPTRP00000057753   2.22e-22   1270-1338   Mib/herc2 domain  

Gorilla gorilla 76_3.1 has 10 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000006202   2.22e-22   50-123   Mib/herc2 domain  
  2.48e-22   195-269   Mib/herc2 domain  
ENSGGOP00000012422   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSGGOP00000012529   2.48e-21   1834-1900   Mib/herc2 domain  
ENSGGOP00000017742   3.4e-22   590-656   Mib/herc2 domain  
ENSGGOP00000018566   3.01e-22   6-79   Mib/herc2 domain  
  3.4e-22   151-225   Mib/herc2 domain  
ENSGGOP00000020816   2.22e-22   1270-1338   Mib/herc2 domain  
ENSGGOP00000027657   2.09e-22   1195-1263   Mib/herc2 domain  

Pongo abelii 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000002312   4.18e-22   48-121   Mib/herc2 domain  
ENSPPYP00000006507   2.22e-22   1268-1336   Mib/herc2 domain  
ENSPPYP00000007118   6.8e-22   781-847   Mib/herc2 domain  

Nomascus leucogenys 76_1.0 has 5 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000000126   4.05e-22   121-194   Mib/herc2 domain  
ENSNLEP00000008295   3.01e-23   134-209   Mib/herc2 domain  
  0.0000000157   4-62   Mib/herc2 domain  
ENSNLEP00000012856   5.62e-22   1100-1166   Mib/herc2 domain  
ENSNLEP00000019362   2.22e-22   1268-1336   Mib/herc2 domain  

Papio anubis 76 has 6 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000009969   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSPANP00000016171   2.62e-21   1841-1907   Mib/herc2 domain  
ENSPANP00000017766   2.22e-22   1265-1333   Mib/herc2 domain  
ENSPANP00000018142   3.01e-22   50-123   Mib/herc2 domain  
  5.1e-22   196-269   Mib/herc2 domain  

Macaca mulatta 76_1 has 16 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000004174   1.83e-22   783-851   Mib/herc2 domain  
ENSMMUP00000005845   2.48e-21   1683-1749   Mib/herc2 domain  
ENSMMUP00000013391   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSMMUP00000017013   3.79e-22   63-136   Mib/herc2 domain  
  6.28e-22   209-282   Mib/herc2 domain  
ENSMMUP00000017014   3.4e-22   63-136   Mib/herc2 domain  
  0.0000000379   209-235,283-313   Mib/herc2 domain  
ENSMMUP00000017015   3.53e-22   63-136   Mib/herc2 domain  
  6.02e-22   209-282   Mib/herc2 domain  
ENSMMUP00000017016   3.53e-22   63-136   Mib/herc2 domain  
  6.02e-22   209-282   Mib/herc2 domain  
ENSMMUP00000033978   3.4e-22   590-656   Mib/herc2 domain  
ENSMMUP00000033981   3.4e-22   333-399   Mib/herc2 domain  
ENSMMUP00000033982   4.84e-22   590-656   Mib/herc2 domain  
ENSMMUP00000033985   6.54e-22   671-737   Mib/herc2 domain  

Callithrix jacchus 76_3.2.1 has 12 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000010594   2.22e-22   1273-1341   Mib/herc2 domain  
ENSCJAP00000010609   2.22e-22   1268-1336   Mib/herc2 domain  
ENSCJAP00000010612   1.7e-22   720-788   Mib/herc2 domain  
ENSCJAP00000020198   2.48e-22   6-79   Mib/herc2 domain  
  0.0000000131   151-178,226-256   Mib/herc2 domain  
ENSCJAP00000020202   2.75e-22   6-79   Mib/herc2 domain  
  4.71e-22   151-226   Mib/herc2 domain  
ENSCJAP00000020204   4.84e-22   50-125   Mib/herc2 domain  
ENSCJAP00000020205   3.53e-22   6-79   Mib/herc2 domain  
  5.89e-22   151-226   Mib/herc2 domain  
ENSCJAP00000021774   2.62e-21   1842-1908   Mib/herc2 domain  
ENSCJAP00000038159   2.88e-23   69-144   Mib/herc2 domain  

Otolemur garnettii 76_3 has 7 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000000157   2.62e-21   1841-1907   Mib/herc2 domain  
ENSOGAP00000012799   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSOGAP00000015876   3.14e-23   145-220   Mib/herc2 domain  
  6.93e-20   11-73   Mib/herc2 domain  
ENSOGAP00000016180   2.22e-22   11-84   Mib/herc2 domain  
  5.75e-22   156-230   Mib/herc2 domain  

Microcebus murinus 76_1 has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000007189   2.62e-23   11-86   Mib/herc2 domain  
ENSMICP00000008970   2.62e-21   1864-1930   Mib/herc2 domain  
ENSMICP00000010041   3.53e-22   25-98   Mib/herc2 domain  
  4.05e-22   170-244   Mib/herc2 domain  

Rattus norvegicus 76_5.0 has 6 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000008459   2.22e-22   1274-1342   Mib/herc2 domain  
ENSRNOP00000018025   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSRNOP00000019245   2.48e-21   1807-1873   Mib/herc2 domain  
ENSRNOP00000023696   2.09e-22   151-225   Mib/herc2 domain  
  3.14e-22   6-79   Mib/herc2 domain  

Mus musculus 76_38 has 11 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000046766   2.22e-22   1268-1336   Mib/herc2 domain  
ENSMUSP00000054428   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSMUSP00000075579   2.48e-21   1864-1930   Mib/herc2 domain  
ENSMUSP00000099465   2.62e-22   151-225   Mib/herc2 domain  
  2.88e-22   6-79   Mib/herc2 domain  
ENSMUSP00000122269   0.000000000772   1-50   Mib/herc2 domain  
ENSMUSP00000131573   2.48e-21   1864-1930   Mib/herc2 domain  
ENSMUSP00000131712   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSMUSP00000136449   2.22e-22   1273-1341   Mib/herc2 domain  

Dipodomys ordii 76_1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000005406   2.22e-22   1232-1300   Mib/herc2 domain  
ENSDORP00000008569   0.00000000589   1882-1927   Mib/herc2 domain  
ENSDORP00000009257   0.00000000262   68-101   Mib/herc2 domain  
ENSDORP00000009580   3.79e-22   57-131   Mib/herc2 domain  

Ictidomys tridecemlineatus 76_2 has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000000781   3.53e-22   6-79   Mib/herc2 domain  
  5.36e-22   152-225   Mib/herc2 domain  
ENSSTOP00000006205   6.02e-22   333-399   Mib/herc2 domain  
ENSSTOP00000017249   2.22e-22   1268-1336   Mib/herc2 domain  

Heterocephalus glaber v1.7-2 has 6 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000261312   2.22e-22   1268-1336   Mib/herc2 domain  
HGL_H00000261537   2.88e-23   145-220   Mib/herc2 domain  
  6.15e-20   11-73   Mib/herc2 domain  
HGL_H00000261609   2.62e-21   1866-1932   Mib/herc2 domain  
HGL_H00000348081   4.84e-22   123-196   Mib/herc2 domain  
  6.8e-22   268-342   Mib/herc2 domain  

Cavia porcellus 76_3 has 5 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000004813   2.75e-23   70-145   Mib/herc2 domain  
ENSCPOP00000009549   2.62e-21   1869-1935   Mib/herc2 domain  
ENSCPOP00000012213   2.22e-22   1263-1331   Mib/herc2 domain  
ENSCPOP00000020436   4.05e-22   8-81   Mib/herc2 domain  
  8.89e-22   154-227   Mib/herc2 domain  

Oryctolagus cuniculus 76_2 has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000003310   2.22e-22   1268-1336   Mib/herc2 domain  
ENSOCUP00000004993   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSOCUP00000005856   2.62e-21   1874-1940   Mib/herc2 domain  

Ochotona princeps 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000002135   2.22e-22   1266-1334   Mib/herc2 domain  
ENSOPRP00000005507   8.37e-22   69-142   Mib/herc2 domain  
ENSOPRP00000011413   0.00000000392   1776-1821   Mib/herc2 domain  
 
Weak hits:
ENSOPRP00000015768   0.000471   175-209   Mib/herc2 domain  

Tupaia belangeri 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000004216   0.00000000301   1775-1820   Mib/herc2 domain  
ENSTBEP00000014043   0.000000536   101-143   Mib/herc2 domain  

Sus scrofa 76_10.2 has 8 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000002152   2.22e-22   1268-1336   Mib/herc2 domain  
ENSSSCP00000003633   1.57e-22   12-85   Mib/herc2 domain  
  3.92e-22   157-231   Mib/herc2 domain  
ENSSSCP00000016799   8.5e-22   1062-1128   Mib/herc2 domain  
ENSSSCP00000025076   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSSSCP00000028001   1.57e-22   6-79   Mib/herc2 domain  
  3.79e-22   151-225   Mib/herc2 domain  

Bos taurus 76_3.1 has 7 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000009822   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSBTAP00000014195   1.57e-22   6-79   Mib/herc2 domain  
  3.92e-22   151-225   Mib/herc2 domain  
ENSBTAP00000018496   2.62e-21   1869-1935   Mib/herc2 domain  
ENSBTAP00000053792   2.22e-22   1268-1336   Mib/herc2 domain  
ENSBTAP00000054070   2.48e-21   1779-1845   Mib/herc2 domain  

Ovis aries 76_3.1 has 5 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000003014   0.0000000000000379   153-219   Mib/herc2 domain  
  0.0000000000262   5-40   Mib/herc2 domain  
ENSOARP00000006466   2.22e-22   1268-1336   Mib/herc2 domain  
ENSOARP00000008914   3.14e-23   156-231   Mib/herc2 domain  
ENSOARP00000016901   2.62e-21   1866-1932   Mib/herc2 domain  

Vicugna pacos 76_1 has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000000275   0.0000000000000131   845-909   Mib/herc2 domain  
ENSVPAP00000000326   3.01e-23   138-213   Mib/herc2 domain  
  1.57e-18   9-66   Mib/herc2 domain  
ENSVPAP00000010865   2.09e-22   1267-1335   Mib/herc2 domain  

Tursiops truncatus 76_1 has 6 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000002468   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSTTRP00000002547   1.15e-22   54-127   Mib/herc2 domain  
  3.66e-22   199-273   Mib/herc2 domain  
ENSTTRP00000003547   2.22e-22   1258-1326   Mib/herc2 domain  
ENSTTRP00000013709   2.62e-21   1861-1927   Mib/herc2 domain  

Mustela putorius furo 76_1.0 has 6 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000005277   2.22e-22   1268-1336   Mib/herc2 domain  
ENSMPUP00000005557   3.14e-23   145-220   Mib/herc2 domain  
  6.67e-20   11-73   Mib/herc2 domain  
ENSMPUP00000014300   1.7e-22   52-125   Mib/herc2 domain  
  3.53e-22   197-271   Mib/herc2 domain  
ENSMPUP00000017270   2.62e-21   1864-1930   Mib/herc2 domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   11271 11271
No Yes Homo sapiens 76_38 Human 31 20
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 4 3
No Yes Gorilla gorilla 76_3.1 Western gorilla 10 7
No Yes Pongo abelii 76_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 5 4
No Yes Papio anubis 76 Olive baboon 6 4
No Yes Macaca mulatta 76_1 Rhesus monkey 16 11
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 12 9
No Yes Otolemur garnettii 76_3 Small-eared galago 7 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 4 3
No Yes Rattus norvegicus 76_5.0 Norway rat 6 4
No Yes Mus musculus 76_38 House mouse 11 8
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 4 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 6 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 5 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 4 3
No Yes Ochotona princeps 76 American pika 3 3
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 8 5
No Yes Bos taurus 76_3.1 Cattle 7 5
No Yes Ovis aries 76_3.1 Sheep 5 4
No Yes Vicugna pacos 76_1 Alpaca 4 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 6 4
No Yes Mustela putorius furo 76_1.0 Domestic ferret 6 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 6 4
No Yes Canis familiaris 76_3.1 Dog 9 6
No Yes Felis catus 76_6.2 Domestic cat 4 4
No Yes Equus caballus 76_2 Horse 6 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 76_1 Large flying fox 5 4
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 4 4
No Yes Loxodonta africana 76_3 African savanna elephant 7 5
No Yes Echinops telfairi 76 Small Madagascar hedgehog 4 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 6 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 3 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 5 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 8 7
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 6 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 4 3
No Yes Saccoglossus kowalevskii v3.0   24 20
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 2
No Yes Meleagris gallopavo 76_2 Turkey 5 4
No Yes Gallus gallus 76_4 Chicken 6 4
No Yes Anas platyrhynchos 76_1.0 Mallard 5 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 7 5
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 6 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 6 4
No Yes Anolis carolinensis 76_2.0 Green anole 5 4
No Yes Xenopus laevis African clawed frog 14 7
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 11 7
No Yes Latimeria chalumnae 76_1 Coelacanth 8 5
No Yes Lepisosteus oculatus 76 Spotted gar 9 7
No Yes Gadus morhua 76_1 Atlantic cod 6 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 6 4
No Yes Takifugu rubripes 76_4 Torafugu 16 9
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 6 4
No Yes Oryzias latipes 76_1 Japanese medaka 8 5
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 6 4
No Yes Poecilia formosa 76 Amazon molly 6 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 9 7
No Yes Astyanax mexicanus 76 Mexican tetra 6 4
No Yes Danio rerio 76_9 Zebrafish 5 4
No Yes Oikopleura dioica   2 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 24 15
No Yes Ciona intestinalis 76 Vase tunicate 7 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 38 29
No Yes Adineta vaga   4 2
No Yes Octopus bimaculoides 280   11 11
No Yes Crassostrea gigas 22 Pacific oyster 72 42
No Yes Lottia gigantea Owl limpet 7 4
No Yes Helobdella robusta   4 3
No Yes Capitella sp. I   2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 4 3
No Yes Bombyx mori Domestic silkworm 2 2
No Yes Nasonia vitripennis Jewel wasp 4 3
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 7 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 6 4
No Yes Linepithema humile v1.1 Argentine ant 6 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 4
No Yes Solenopsis invicta v.2.2.3 Red fire ant 6 4
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 4
No Yes Atta cephalotes v1.1   6 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 6 4
No Yes Lucilia cuprina Australian sheep blowfly 7 5
No Yes Drosophila grimshawi 1.3   8 5
No Yes Drosophila willistoni 1.3   6 4
No Yes Drosophila pseudoobscura 2.13   5 3
No Yes Drosophila persimilis 1.3   6 4
No Yes Drosophila suzukii   6 5
No Yes Drosophila yakuba 1.3   6 4
No Yes Drosophila simulans 1.3   6 3
No Yes Drosophila sechellia 1.3   6 4
No Yes Drosophila melanogaster 76_5 Fruit fly 8 5
No Yes Drosophila erecta 1.3   6 4
No Yes Drosophila ananassae 1.3   6 4
No Yes Drosophila virilis 1.2   6 4
No Yes Drosophila mojavensis 1.3   6 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 7 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 6 4
No Yes Anopheles darlingi 22 American malaria mosquito 6 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 6 4
No Yes Tribolium castaneum 3.0 Red flour beetle 6 4
No Yes Pediculus humanus corporis (Early assembly) Human body louse 6 4
No Yes Acyrthosiphon pisum Pea aphid 3 2
No Yes Rhodnius prolixus 22   5 4
No Yes Daphnia pulex Common water flea 8 5
No Yes Strigamia maritima 22   6 4
No Yes Sarcoptes scabiei   2 1
No Yes Tetranychus urticae Two-spotted spider mite 3 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 6 3
No Yes Pristionchus pacificus   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 4 4
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Hymenolepis microstoma   4 2
No Yes Echinococcus multilocularis   2 1
No Yes Echinococcus granulosus   3 1
No Yes Taenia solium Pork tapeworm 3 1
No Yes Schistosoma mansoni   2 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   13 8
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 4
No Yes Hydra vulgaris   3 2
No Yes Amphimedon queenslandica   8 6
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   3 3
No Yes Monosiga brevicollis   1 1
No Yes Entamoeba dispar 1.2   6 3
No Yes Entamoeba invadens 1.2   8 4
No Yes Entamoeba histolytica 1   5 3
No Yes Chlamydomonas reinhardtii 4.0   6 5
No Yes Cyanophora paradoxa   8 4
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Ectocarpus siliculosus   3 3
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   4 3
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   3 2
No Yes Pythium aphanidermatum DAOM BR444 22   3 3
No Yes Pythium irregulare DAOM BR486 22   3 2
No Yes Pythium vexans DAOM BR484 22   4 3
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   4 3
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Fragilariopsis cylindrus   1 1
No Yes Symbiodinium minutum clade B1 v1.2   10 6
No Yes Guillardia theta CCMP2712 v1.0   4 4
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 11 7
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 6 4
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 6 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 37 23
No Yes Homo sapiens (NCBI version) Human 14 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 6 4
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 7 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 4 3
No Yes Gorilla gorilla 69_3.1 Western gorilla 6 4
No Yes Pongo abelii 69_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 5 4
No Yes Macaca mulatta 69_1 Rhesus monkey 6 4
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 5 4
No Yes Otolemur garnettii 69_3 Small-eared galago 5 3
No Yes Microcebus murinus 69_1 Gray mouse lemur 4 3
No Yes Rattus norvegicus 69_3.4 Norway rat 6 4
No Yes Mus musculus 69_38 House mouse 6 4
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 4 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 5 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 4
No Yes Ochotona princeps 69 American pika 3 3
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 6 4
No Yes Bos taurus 69_3.1 Cattle 6 4
No Yes Vicugna pacos 69_1 Alpaca 4 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 6 4
No Yes Mustela putorius furo 69_1.0 Domestic ferret 6 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 6 4
No Yes Canis familiaris 69_3.1 Dog 6 4
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 5 4
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 5 4
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 4 4
No Yes Loxodonta africana 69_3 African savanna elephant 5 4
No Yes Echinops telfairi 69 Small Madagascar hedgehog 4 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 3 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 5 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 5 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 4 3
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 2
No Yes Meleagris gallopavo 69_2 Turkey 5 4
No Yes Gallus gallus 69_2 Chicken 7 5
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 6 4
No Yes Anolis carolinensis 69_2.0 Green anole 5 4
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 6 4
No Yes Latimeria chalumnae 69_1 Coelacanth 7 4
No Yes Gadus morhua 69_1 Atlantic cod 6 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 6 4
No Yes Takifugu rubripes 69_4 Torafugu 6 4
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 6 4
No Yes Oryzias latipes 69_1 Japanese medaka 6 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 6 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 6 4
No Yes Danio rerio 69_9 Zebrafish 4 3
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 3
No Yes Ciona intestinalis 69 Vase tunicate 7 4
No Yes Drosophila melanogaster 69_5 Fruit fly 6 4
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   5646 3979
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   22 12
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   303 216
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   3021 2111
No Yes Global Ocean Sampling Expedition (GOS)   7 4
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   8 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   10 10
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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