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  Home > Genomes > AF0587 domain-like domains in all archaeal genomes


AF0587 domain-like family domain assignments
in
all archaeal genomes

Assignment details

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25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 86
  1 2 3 4   Next Last

halophilic archaeon DL31 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|345005210|ref|YP_004808063.1|   1.24e-45   0.000087   284-434   2q07 A:244-393  

Methanocella arvoryzae MRE50 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|147921597|ref|YP_684586.1|   8.11e-44   0.0000531   288-432   2q07 A:244-393  
 
Weak hits:
gi|147920363|ref|YP_685864.1|   3.01e-40   0.0039   26-182   2q07 A:244-393  

Methanocella conradii HZ254 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383320169|ref|YP_005381010.1|   3.14e-44   0.0000498   295-439   2q07 A:244-393  
 
Weak hits:
gi|383319503|ref|YP_005380344.1|   9.68e-40   0.0025   26-176   2q07 A:244-393  

Methanocella paludicola SANAE has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|282164186|ref|YP_003356571.1|   2.48e-46   0.0000463   295-440   2q07 A:244-393  
 
Weak hits:
gi|282163793|ref|YP_003356178.1|   1.96e-38   0.0032   26-183   2q07 A:244-393  

Methanosaeta harundinacea 6Ac has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386001440|ref|YP_005919739.1|   7.45e-42   0.000059   299-440   2q07 A:244-393  

Methanosaeta thermophila PT has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|116754949|ref|YP_844067.1|   1.7e-43   0.0000634   277-421   2q07 A:244-393  

Methanosaeta concilii GP6 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|330506597|ref|YP_004383025.1|   8.5e-43   0.0000532   295-425   2q07 A:244-393  

Methanosalsum zhilinae DSM 4017 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|336475988|ref|YP_004615129.1|   1.96e-48   0.0000599   306-458   2q07 A:244-393  
 
Weak hits:
gi|336477305|ref|YP_004616446.1|   1.15e-41   0.0029   28-185   2q07 A:244-393  

Methanohalobium evestigatum Z-7303 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|298674013|ref|YP_003725763.1|   2.75e-53   0.0000275   312-463   2q07 A:244-393  
 
Weak hits:
gi|298674173|ref|YP_003725923.1|   1.24e-42   0.0018   28-185   2q07 A:244-393  

Methanococcoides burtonii DSM 6242 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|91773719|ref|YP_566411.1|   1.96e-53   0.0000438   309-461   2q07 A:244-393  
 
Weak hits:
gi|91774028|ref|YP_566720.1|   9.02e-42   0.0024   29-187   2q07 A:244-393  

Methanosarcina acetivorans C2A has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|20093411|ref|NP_619486.1|   1.27e-52   0.0000179   316-467   2q07 A:244-393  
 
Weak hits:
gi|20089805|ref|NP_615880.1|   1.57e-42   0.0038   28-186   2q07 A:244-393  

Methanosarcina mazei Go1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|21227394|ref|NP_633316.1|   2.22e-53   0.0000179   314-466   2q07 A:244-393  
 
Weak hits:
gi|21228145|ref|NP_634067.1|   3.4e-40   0.0034   78-235   2q07 A:244-393  

Methanosarcina barkeri str. Fusaro has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|73668493|ref|YP_304508.1|   2.09e-52   0.0000233   317-469   2q07 A:244-393  
 
Weak hits:
gi|73670900|ref|YP_306915.1|   1.57e-41   0.003   28-186   2q07 A:244-393  

Methanohalophilus mahii DSM 5219 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|294496598|ref|YP_003543091.1|   2.75e-50   0.0000402   309-461   2q07 A:244-393  
 
Weak hits:
gi|294494970|ref|YP_003541463.1|   1.09e-38   0.0028   28-185   2q07 A:244-393  

Methanosphaerula palustris E1-9c has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|219852427|ref|YP_002466859.1|   2.62e-52   0.0000639   256-404   2q07 A:244-393  
 
Weak hits:
gi|219852470|ref|YP_002466902.1|   6.02e-42   0.0015   27-186   2q07 A:244-393  

Methanoregula boonei 6A8 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|154150857|ref|YP_001404475.1|   4.05e-51   0.0000457   261-408   2q07 A:244-393  
 
Weak hits:
gi|154151733|ref|YP_001405351.1|   4.18e-39   0.0019   31-179   2q07 A:244-393  

Methanospirillum hungatei JF-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|88602409|ref|YP_502587.1|   3.66e-48   0.0000805   257-407   2q07 A:244-393  
 
Weak hits:
gi|88601662|ref|YP_501840.1|   3.27e-41   0.00096   40-197   2q07 A:244-393  

Methanocorpusculum labreanum Z has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|124486028|ref|YP_001030644.1|   1.1e-47   0.0000595   257-405   2q07 A:244-393  
 
Weak hits:
gi|124485412|ref|YP_001030028.1|   1.96e-41   0.0017   23-181   2q07 A:244-393  

Methanoplanus petrolearius DSM 11571 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|307354227|ref|YP_003895278.1|   3.53e-45   0.0000916   258-408   2q07 A:244-393  
 
Weak hits:
gi|307353385|ref|YP_003894436.1|   8.63e-41   0.0024   31-189   2q07 A:244-393  

Methanoculleus bourgensis MS2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|397781192|ref|YP_006545665.1|   1.57e-50   0.0000585   259-408   2q07 A:244-393  
 
Weak hits:
gi|397781333|ref|YP_006545806.1|   1.96e-38   0.0024   38-196   2q07 A:244-393  

Methanoculleus marisnigri JR1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|126179233|ref|YP_001047198.1|   1.14e-51   0.0000498   257-406   2q07 A:244-393  
 
Weak hits:
gi|126179271|ref|YP_001047236.1|   1.31e-39   0.003   42-200   2q07 A:244-393  

Methanopyrus kandleri AV19 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|20094520|ref|NP_614367.1|   5.62e-38   0.0001   243-390   2q07 A:244-393  

Ferroglobus placidus DSM 10642 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|288932170|ref|YP_003436230.1|   1.57e-38   0.0000233   244-373   2q07 A:244-393  

Archaeoglobus profundus DSM 5631 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|284162916|ref|YP_003401539.1|   8.89e-45   0.00000545   236-386   2q07 A:244-393  

Archaeoglobus veneficus SNP6 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|327400651|ref|YP_004341490.1|   1.96e-40   0.00000772   255-401   2q07 A:244-393  
 
Weak hits:
gi|327400373|ref|YP_004341212.1|   0.000000000106   0.0017   37-174   2q07 A:244-393  

  1 2 3 4   Next Last
Showing genomes 1 to 25 of 86

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Select to display   Genome       Domains   Proteins
No Yes ALL   1055 1055
No Yes halophilic archaeon DL31   1 1
No Yes Methanocella arvoryzae MRE50   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   1 1
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoregula boonei 6A8   1 1
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanocorpusculum labreanum Z   1 1
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Methanopyrus kandleri AV19   1 1
No Yes Ferroglobus placidus DSM 10642   1 1
No Yes Archaeoglobus profundus DSM 5631   1 1
No Yes Archaeoglobus veneficus SNP6   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus yayanosii CH1   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermoplasmatales archaeon BRNA1   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halorubrum lacusprofundi ATCC 49239   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanococcus maripaludis C5   1 1
No Yes Methanococcus vannielii SB   1 1
No Yes Methanothermus fervidus DSM 2088   1 1
No Yes Methanothermobacter thermautotrophicus str. Delta H   1 1
No Yes Methanosphaera stadtmanae DSM 3091   1 1
No Yes Methanobrevibacter smithii ATCC 35061   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Methanococcus maripaludis X1   1 1
No Yes Methanococcus maripaludis C6   1 1
No Yes Methanococcus maripaludis C7   1 1
No Yes Methanococcus maripaludis S2   1 1
No Yes Methanobacterium sp. SWAN-1   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   441 441
No Yes STRING v9.0.5 (STRING)   38 38
No Yes Uniprot 2018_03 genome   405 405
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3
No Yes TargetDB (Targets)   15 15

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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