SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > SAV4671-like domains in all genomes


SAV4671-like family domain assignments
in
all genomes

Assignment details

(show help)

25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 36
  1 2   Next Last

Thermobispora bispora DSM 43833 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|296271394|ref|YP_003654026.1|   1.95e-34   0.0000508   2-129   3cnx A:5-157  
 
Weak hits:
gi|296268432|ref|YP_003651064.1|   0.0000000000000471   0.054   44-149   3cnx A:5-157  

Catenulispora acidiphila DSM 44928 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|256397522|ref|YP_003119086.1|   3.83e-35   0.0000844   81-218   3cnx A:5-157  

Thermobifida fusca YX has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|72163291|ref|YP_290948.1|   7.32e-38   0.0000672   6-136   3cnx A:5-157  

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|297563888|ref|YP_003682861.1|   3.06e-36   0.0000958   7-136   3cnx A:5-157  
 
Weak hits:
gi|297561070|ref|YP_003680044.1|   0.0000000000292   0.034   32-150   3cnx A:5-157  

Thermomonospora curvata DSM 43183 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|269128697|ref|YP_003302067.1|   2.67e-39   0.0000678   4-135   3cnx A:5-157  

Streptosporangium roseum DSM 43021 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|271970338|ref|YP_003344534.1|   1.06e-38   0.0000776   4-133   3cnx A:5-157  

Kitasatospora setae KM-6054 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|357391285|ref|YP_004906126.1|   1.82e-38   0.00000656   18-154   3cnx A:5-157  

Streptomyces coelicolor A3(2) has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|21221826|ref|NP_627605.1|   1.66e-41   0.00000036   7-153   3cnx A:5-157  

Streptomyces sp. PAMC26508 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|479320163|ref|YP_007860214.1|   5.08e-43   0.00000262   12-146   3cnx A:5-157  
 
Weak hits:
gi|479322547|ref|YP_007862598.1|   0.000000000000025   0.038   15-118   3cnx A:5-157  
gi|479323022|ref|YP_007863073.1|   0.0000752   0.077   114-169   3cnx A:5-157  

Streptomyces flavogriseus ATCC 33331 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|357412672|ref|YP_004924408.1|   5.08e-43   0.00000262   12-146   3cnx A:5-157  
 
Weak hits:
gi|357409945|ref|YP_004921681.1|   0.0000752   0.077   114-169   3cnx A:5-157  
gi|357410388|ref|YP_004922124.1|   0.000000000000025   0.038   15-118   3cnx A:5-157  

Streptomyces sp. SirexAA-E has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|345000408|ref|YP_004803262.1|   8.41e-42   0.00000269   12-146   3cnx A:5-157  

Streptomyces griseus subsp. griseus NBRC 13350 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|182437886|ref|YP_001825605.1|   2.57e-39   0.00000325   9-143   3cnx A:5-157  
 
Weak hits:
gi|182435202|ref|YP_001822921.1|   0.000000000000189   0.039   9-111   3cnx A:5-157  
gi|182436881|ref|YP_001824600.1|   0.0000000000075   0.06   15-124   3cnx A:5-157  

Streptomyces bingchenggensis BCW-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|374988682|ref|YP_004964177.1|   6.81e-38   0.00000348   3-138   3cnx A:5-157  
 
Weak hits:
gi|374992174|ref|YP_004967669.1|   1.84e-25   0.09   7-137   3cnx A:5-157  

Streptomyces violaceusniger Tu 4113 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|345016124|ref|YP_004818478.1|   1.51e-39   0.00000315   3-138   3cnx A:5-157  

Streptomyces avermitilis MA-4680 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|29831214|ref|NP_825848.1|   3.73e-44   0.0000000721   6-155   3cnx A:5-157  

Streptomyces cattleya NRRL 8057 = DSM 46488 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386356277|ref|YP_006054523.1|   4.3e-40   0.00000852   8-142   3cnx A:5-157  

Streptomyces scabiei 87.22 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|290958421|ref|YP_003489603.1|   6.59e-42   0.0000003   5-153   3cnx A:5-157  

Streptomyces hygroscopicus subsp. jinggangensis 5008 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386841620|ref|YP_006246678.1|   1.95e-43   0.000000228   5-153   3cnx A:5-157  
 
Weak hits:
gi|386837085|ref|YP_006242143.1|   0.0000156   0.067   10-51   3cnx A:5-157  
gi|386843114|ref|YP_006248172.1|   0.0183   0.07   124-208   3cnx A:5-157  

Kribbella flavida DSM 17836 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|284034329|ref|YP_003384260.1|   6.43e-43   0.0000746   15-142   3cnx A:5-157  

Nocardiopsis alba ATCC BAA-2165 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|403510010|ref|YP_006641648.1|   8.79e-36   0.0001   7-136   3cnx A:5-157  

Streptomyces albus J1074 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|478689970|ref|YP_007746780.1|   2.54e-40   0.00000448   2-135   3cnx A:5-157  
 
Weak hits:
gi|478688622|ref|YP_007745432.1|   0.0000000000296   0.038   28-131   3cnx A:5-157  

Streptomyces rapamycinicus NRRL 5491 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|557688292|ref|YP_008791833.1|   1.62e-37   0.00000558   4-129   3cnx A:5-157  

Streptomyces davawensis JCM 4913 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|471323529|ref|YP_007522559.1|   4.2e-45   0.000000219   5-153   3cnx A:5-157  
 
Weak hits:
gi|471324052|ref|YP_007523082.1|   7.07e-20   0.063   17-129   3cnx A:5-157  

Streptomyces fulvissimus DSM 40593 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|488610547|ref|YP_007931883.1|   1.42e-41   0.00000255   9-143   3cnx A:5-157  
 
Weak hits:
gi|488611702|ref|YP_007933038.1|   0.000000000121   0.077   27-133   3cnx A:5-157  
gi|488613489|ref|YP_007934825.1|   0.00000000000000742   0.088   15-118   3cnx A:5-157  

Streptomyces venezuelae ATCC 10712 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|408678969|ref|YP_006878796.1|   1.74e-43   0.00000343   4-138   3cnx A:5-157  
 
Weak hits:
gi|408679774|ref|YP_006879601.1|   0.000000000166   0.038   15-126   3cnx A:5-157  

  1 2   Next Last
Showing genomes 1 to 25 of 36

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a SAV4671-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   1549 1549
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Kribbella flavida DSM 17836   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes NCBI 2017_08 genome   1016 1016
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   7 7
No Yes Uniprot 2018_03 genome   471 471
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   3 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   9 9
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.