SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


TrmB middle domain-like family domain assignments
in
all archaeal genomes

Assignment details

(show help)

7 selected genomes have 7 significant domains in 7 proteins.


Thermococcus sibiricus MM 739 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|242398353|ref|YP_002993777.1|   2.59e-72   0.00000158   110-245   2f5t X:110-246  
 
Weak hits:
gi|242399754|ref|YP_002995179.1|   0.00581   0.0041   113-183   2f5t X:110-246  

Thermococcus barophilus MP has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|315231733|ref|YP_004072169.1|   1.32e-67   0.0000197   111-246   2f5t X:110-246  
 
Weak hits:
gi|315230041|ref|YP_004070477.1|   0.000264   0.039   118-195   2f5t X:110-246  
gi|315230526|ref|YP_004070962.1|   0.0011   0.023   140-263   2f5t X:110-246  
gi|315231414|ref|YP_004071850.1|   0.00785   0.0046   113-181   2f5t X:110-246  
gi|315231597|ref|YP_004072033.1|   0.0000471   0.032   122-176   2f5t X:110-246  

Pyrococcus sp. ST04 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|389852704|ref|YP_006354938.1|   1.02e-51   0.0000387   111-246   2f5t X:110-246  
 
Weak hits:
gi|389851720|ref|YP_006353954.1|   0.0188   0.0054   113-157   2f5t X:110-246  
gi|389852122|ref|YP_006354356.1|   0.000022   0.034   134-257   2f5t X:110-246  
gi|389852917|ref|YP_006355151.1|   0.000165   0.089   111-180   2f5t X:110-246  

Pyrococcus horikoshii OT3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|14590873|ref|NP_142945.1|   8.95e-70   0.00000317   111-247   2f5t X:110-246  
 
Weak hits:
gi|33359332|ref|NP_142735.2|   0.0000131   0.025   145-266   2f5t X:110-246  

Pyrococcus furiosus COM1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|397652608|ref|YP_006493189.1|   1.41e-72   0.000000257   110-245   2f5t X:110-246  
 
Weak hits:
gi|397651001|ref|YP_006491582.1|   0.00000126   0.033   140-262   2f5t X:110-246  
gi|397652163|ref|YP_006492744.1|   0.0408   0.0055   113-156   2f5t X:110-246  

Thermococcus litoralis DSM 5473 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|530548071|ref|YP_008428604.1|   1.41e-72   0.000000257   110-245   2f5t X:110-246  
 
Weak hits:
gi|530548746|ref|YP_008429292.1|   0.0157   0.0048   113-181   2f5t X:110-246  

Pyrococcus furiosus DSM 3638 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|18978115|ref|NP_579472.1|   1.41e-72   0.000000257   110-245   2f5t X:110-246  
 
Weak hits:
gi|18976496|ref|NP_577853.1|   0.0408   0.0055   113-156   2f5t X:110-246  
gi|18976868|ref|NP_578225.1|   0.00000126   0.033   140-262   2f5t X:110-246  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a TrmB middle domain-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   60 60
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes NCBI 2017_08 genome   20 20
No Yes STRING v9.0.5 (STRING)   3 3
No Yes Uniprot 2018_03 genome   18 18
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]