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flu NP-like superfamily domain assignments
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Protein Data Bank

Network of domain occurrence in all genomes

Assignment details

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Protein Data Bank (all PDB sequenc) has 84 significant domains in 84 proteins.

     

Sequence ID   Evalue   Region   Family  
2iqh_A   2.56e-235   14-482   Flu NP-like  
2iqh_B   2.56e-235   14-482   Flu NP-like  
2iqh_C   2.56e-235   14-482   Flu NP-like  
2q06_A   2.05e-235   27-495   Flu NP-like  
2q06_B   2.05e-235   27-495   Flu NP-like  
2wfs_A   2.56e-235   14-482   Flu NP-like  
2wfs_B   2.56e-235   14-482   Flu NP-like  
2wfs_C   2.56e-235   14-482   Flu NP-like  
2wfs_D   2.56e-235   14-482   Flu NP-like  
2wfs_E   2.56e-235   14-482   Flu NP-like  
2wfs_F   2.56e-235   14-482   Flu NP-like  
2wfs_G   2.56e-235   14-482   Flu NP-like  
2wfs_H   2.56e-235   14-482   Flu NP-like  
2wfs_I   2.56e-235   14-482   Flu NP-like  
2ymn_A   2.56e-235   21-489   Flu NP-like  
2ymn_B   2.56e-235   21-489   Flu NP-like  
2ymn_C   2.56e-235   21-489   Flu NP-like  
2ymn_D   2.56e-235   21-489   Flu NP-like  
2ymn_E   2.56e-235   21-489   Flu NP-like  
2ymn_F   2.56e-235   21-489   Flu NP-like  
3ro5_A   2.56e-235   14-482   Flu NP-like  
3ro5_B   2.56e-235   14-482   Flu NP-like  
3tg6_A   2.56e-235   14-482   Flu NP-like  
3tg6_B   2.56e-235   14-482   Flu NP-like  
3tj0_A   2.6e-201   73-549   Flu NP-like  
3tj0_B   2.6e-201   73-549   Flu NP-like  
3zdp_A   6.22e-234   21-489   Flu NP-like  
3zdp_B   6.22e-234   21-489   Flu NP-like  
3zdp_C   6.22e-234   21-489   Flu NP-like  
4bbl_A   2.56e-235   14-482   Flu NP-like  
4bbl_B   2.56e-235   14-482   Flu NP-like  
4bbl_C   2.56e-235   14-482   Flu NP-like  
4bbl_D   2.56e-235   14-482   Flu NP-like  
4bbl_E   2.56e-235   14-482   Flu NP-like  
4bbl_F   2.56e-235   14-482   Flu NP-like  
4bbl_G   2.56e-235   14-482   Flu NP-like  
4bbl_H   2.56e-235   14-482   Flu NP-like  
4bbl_I   2.56e-235   14-482   Flu NP-like  
4bbl_J   2.56e-235   14-482   Flu NP-like  
4bbl_K   2.56e-235   14-482   Flu NP-like  
4bbl_L   2.56e-235   14-482   Flu NP-like  
4bbl_M   2.56e-235   14-482   Flu NP-like  
4bbl_N   2.56e-235   14-482   Flu NP-like  
4bbl_O   2.56e-235   14-482   Flu NP-like  
4bbl_P   2.56e-235   14-482   Flu NP-like  
4bbl_Q   2.56e-235   14-482   Flu NP-like  
4bbl_R   2.56e-235   14-482   Flu NP-like  
4bbl_S   2.56e-235   14-482   Flu NP-like  
4bbl_T   2.56e-235   14-482   Flu NP-like  
4bbl_U   2.56e-235   14-482   Flu NP-like  
4bbl_V   2.56e-235   14-482   Flu NP-like  
4bbl_W   2.56e-235   14-482   Flu NP-like  
4bbl_X   2.56e-235   14-482   Flu NP-like  
4dya_A   2.56e-235   14-482   Flu NP-like  
4dya_B   2.56e-235   14-482   Flu NP-like  
4dyb_A   2.56e-235   14-482   Flu NP-like  
4dyb_B   2.56e-235   14-482   Flu NP-like  
4dyn_A   2.56e-235   14-482   Flu NP-like  
4dyn_B   2.56e-235   14-482   Flu NP-like  
4dyp_A   2.56e-235   14-482   Flu NP-like  
4dyp_B   2.56e-235   14-482   Flu NP-like  
4dys_A   2.34e-231   3-466   Flu NP-like  
4dys_B   2.34e-231   3-466   Flu NP-like  
4dys_C   2.34e-231   3-466   Flu NP-like  
4dyt_A   1.54e-234   15-483   Flu NP-like  
4dyt_B   1.54e-234   15-483   Flu NP-like  
4dyt_C   1.54e-234   15-483   Flu NP-like  
4iry_A   4.71e-218   21-466   Flu NP-like  
4iry_B   4.71e-218   21-466   Flu NP-like  
5b7b_A   2.56e-235   21-489   Flu NP-like  
5b7b_B   2.56e-235   21-489   Flu NP-like  
5b7b_C   2.56e-235   21-489   Flu NP-like  
5b7b_D   2.56e-235   21-489   Flu NP-like  
5b7b_E   2.56e-235   21-489   Flu NP-like  
5b7b_F   2.56e-235   21-489   Flu NP-like  
5n2u_A   4.67e-69   8-501   Flu NP-like  
5n2u_B   4.67e-69   8-501   Flu NP-like  
5n2u_C   4.67e-69   8-501   Flu NP-like  
5n2u_D   4.67e-69   8-501   Flu NP-like  
5tjw_A   2.75e-235   21-489   Flu NP-like  
5v5o_A   0.0000000056   1-19   Flu NP-like  
5v5o_B   0.0000000056   1-19   Flu NP-like  
5v5p_A   0.00000000384   1-19   Flu NP-like  
5v5p_B   0.00000000384   1-19   Flu NP-like  

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View all assignments containing a flu NP-like domain in each group of genomes.

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Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   69036 69036
No Yes NCBI 2017_08 genome   12 12
No Yes Uniprot 2018_03 genome   56229 56199
No Yes NCBI viral sequences (Viral)   8 8
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   84 84
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   202 202
No Yes UniProt viral sequences (Viral)   12500 12499

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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