SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Photosystem II 10 kDa phosphoprotein PsbH domains in all bacterial and archaeal genomes


Photosystem II 10 kDa phosphoprotein PsbH superfamily domain assignments
in
all bacterial and archaeal genomes

Assignment details

(show help)

25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 72
  1 2 3   Next Last

Leptolyngbya sp. PCC 7376 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|427724565|ref|YP_007071842.1|   8.5e-31   3-64   PsbH-like  

Pseudanabaena sp. PCC 7367 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428218201|ref|YP_007102666.1|   1.1e-29   3-62   PsbH-like  

Acaryochloris marina MBIC11017 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|158338608|ref|YP_001519785.1|   7.72e-24   2-66   PsbH-like  
 
Weak hits:
gi|158341254|ref|YP_001522382.1|   0.00863   27-66   PsbH-like  

Synechocystis sp. PCC 6803 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|16330221|ref|NP_440949.1|   6.54e-31   3-63   PsbH-like  

Thermosynechococcus sp. NK55 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|571027231|ref|YP_008899349.1|   5.49e-31   3-64   PsbH-like  

Thermosynechococcus elongatus BP-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|22298929|ref|NP_682176.1|   1.54e-48   3-56   PsbH-like  

Synechococcus sp. PCC 7502 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428220332|ref|YP_007104502.1|   1.1e-27   3-62   PsbH-like  

Synechococcus sp. PCC 6312 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|427712940|ref|YP_007061564.1|   1.7e-30   3-63   PsbH-like  

Synechococcus sp. CC9311 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|113954836|ref|YP_729544.1|   6.54e-31   3-64   PsbH-like  

Synechococcus elongatus PCC 7942 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|81299036|ref|YP_399244.1|   7.85e-31   3-64   PsbH-like  

Prochlorococcus marinus str. MIT 9515 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|123965519|ref|YP_001010600.1|   1.57e-22   3-64   PsbH-like  

Microcoleus sp. PCC 7113 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428312383|ref|YP_007123360.1|   7.59e-31   3-64   PsbH-like  

Trichodesmium erythraeum IMS101 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|113476453|ref|YP_722514.1|   5.49e-29   3-64   PsbH-like  

Geitlerinema sp. PCC 7407 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428226040|ref|YP_007110137.1|   6.02e-31   3-64   PsbH-like  

Cyanothece sp. PCC 8802 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|257059524|ref|YP_003137412.1|   9.81e-30   3-62   PsbH-like  

Gloeocapsa sp. PCC 7428 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|434393131|ref|YP_007128078.1|   2.09e-27   3-61   PsbH-like  

Halothece sp. PCC 7418 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428775670|ref|YP_007167457.1|   6.15e-31   3-64   PsbH-like  

Microcystis aeruginosa NIES-843 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|166368141|ref|YP_001660414.1|   7.19e-29   3-62   PsbH-like  

Gloeobacter violaceus PCC 7421 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|37522571|ref|NP_925948.1|   3.92e-25   3-61   PsbH-like  

Rivularia sp. PCC 7116 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|427735454|ref|YP_007054998.1|   1.96e-29   3-64   PsbH-like  
 
Weak hits:
gi|427738660|ref|YP_007058204.1|   0.0654   15-37   PsbH-like  

Calothrix sp. PCC 7507 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|427718432|ref|YP_007066426.1|   4.32e-29   3-64   PsbH-like  

Anabaena variabilis ATCC 29413 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|75910647|ref|YP_324943.1|   1.57e-29   3-62   PsbH-like  

'Nostoc azollae' 0708 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|298490958|ref|YP_003721135.1|   6.28e-29   3-64   PsbH-like  

Nostoc sp. PCC 7107 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|427706340|ref|YP_007048717.1|   5.62e-29   3-64   PsbH-like  

Nostoc punctiforme PCC 73102 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|186684437|ref|YP_001867633.1|   1.44e-29   3-64   PsbH-like  

  1 2 3   Next Last
Showing genomes 1 to 25 of 72

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Photosystem II 10 kDa phosphoprotein PsbH domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   6451 6451
No Yes Selaginella moellendorffii   1 1
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   4 4
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Medicago truncatula Barrel medic 3 3
No Yes Malus domestica v196 Apple 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   3 3
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Brachypodium distachyon Stiff brome 4 4
No Yes Oryza glaberrima African rice 6 6
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 4 4
No Yes Oryza sativa v193 Rice 4 4
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Sorghum bicolor Sorghum 1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Symbiodinium minutum clade B1 v1.2   7 7
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   2 2
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   2 2
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Guillardia theta (nucleomorph)   1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   3 3
No Yes 5_050719P (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes NCBI 2017_08 genome   444 444
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   58 58
No Yes Uniprot 2018_03 genome   5376 5373
No Yes Global Ocean Sampling Expedition (GOS)   75 75
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   83 83
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   128 128

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.