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Gam-like superfamily domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 33 significant domains in 33 proteins.

Showing genomes 1 to 25 of 147
  1 2 3 4 5 6   Next Last

Deinococcus gobiensis I-0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386854426|ref|YP_006258806.1|   0.00000000432   96-246   Gam-like  

Deinococcus proteolyticus MRP has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|325284358|ref|YP_004256898.1|   0.0000523   54-183   Gam-like  

Acidaminococcus intestini RyC-MR95 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|352685219|ref|YP_004897204.1|   3.4e-19   27-183   Gam-like  

Selenomonas ruminantium subsp. lactilytica TAM6421 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383754677|ref|YP_005433580.1|   0.00000000000000432   11-131   Gam-like  

Clostridium thermocellum ATCC 27405 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|125974949|ref|YP_001038859.1|   9.02e-21   24-182   Gam-like  

butyrate-producing bacterium SS3/4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|479193343|ref|YP_007822881.1|   1.18e-36   11-161   Gam-like  

Syntrophobotulus glycolicus DSM 8271 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|325288711|ref|YP_004264892.1|   3.66e-37   11-160   Gam-like  
gi|325290731|ref|YP_004266912.1|   3.66e-37   11-160   Gam-like  
gi|325291068|ref|YP_004267249.1|   3.66e-37   11-160   Gam-like  
gi|325291240|ref|YP_004267421.1|   3.66e-37   11-160   Gam-like  

Desulfotomaculum ruminis DSM 2154 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|334340340|ref|YP_004545320.1|   3.14e-30   11-155   Gam-like  
 
Weak hits:
gi|334340697|ref|YP_004545677.1|   0.0811   84-129   Gam-like  
gi|334342174|ref|YP_004547154.1|   0.0235   259-308   Gam-like  

Eubacterium limosum KIST612 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|310826864|ref|YP_003959221.1|   0.000017   65-170   Gam-like  
gi|365823408|ref|YP_004940379.1|   0.0000157   60-165   Gam-like  
 
Weak hits:
gi|310827452|ref|YP_003959809.1|   0.00327   127-175   Gam-like  
gi|310827690|ref|YP_003960047.1|   0.0275   7-46   Gam-like  

Clostridium novyi NT has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|118443179|ref|YP_878266.1|   1.57e-28   24-176   Gam-like  

Clostridium botulinum A str. ATCC 3502 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|148379648|ref|YP_001254189.1|   6.15e-19   7-133   Gam-like  
 
Weak hits:
gi|148380339|ref|YP_001254880.1|   0.00575   58-160   Gam-like  

Mahella australiensis 50-1 BON has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|332980693|ref|YP_004462134.1|   0.0000000000000497   17-143   Gam-like  
gi|332981135|ref|YP_004462576.1|   0.0000000000000183   25-176   Gam-like  
gi|332983022|ref|YP_004464463.1|   0.000000051   31-147   Gam-like  

Caldicellulosiruptor owensensis OL has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312134846|ref|YP_004002184.1|   6.54e-22   31-188   Gam-like  

Halanaerobium hydrogeniformans has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|312142478|ref|YP_003993924.1|   0.00000000000000102   20-184   Gam-like  
 
Weak hits:
gi|312144699|ref|YP_003996145.1|   0.0602   150-201   Gam-like  

Lactobacillus casei ATCC 334 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116495424|ref|YP_807158.1|   0.000000000000102   37-164   Gam-like  

Lactobacillus buchneri has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|406026722|ref|YP_006725554.1|   0.00000000262   13-161   Gam-like  

Lactococcus lactis subsp. cremoris MG1363 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|125623654|ref|YP_001032137.1|   0.00000222   9-172   Gam-like  

Listeria innocua Clip11262 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|16801653|ref|NP_471921.1|   0.0000536   59-159   Gam-like  
 
Weak hits:
gi|16801348|ref|NP_471616.1|   0.00235   45-157   Gam-like  

Geobacillus thermoglucosidasius C56-YS93 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336234221|ref|YP_004586837.1|   4.84e-18   23-149   Gam-like  

Bacillus licheniformis DSM 13 = ATCC 14580 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|404490812|ref|YP_006714918.1|   7.85e-24   25-184   Gam-like  
 
Weak hits:
gi|404487862|ref|YP_006711968.1|   0.0109   8-48   Gam-like  

Bacillus clausii KSM-K16 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|56963137|ref|YP_174864.1|   2.88e-20   22-181   Gam-like  
gi|56964625|ref|YP_176356.1|   0.0000955   22-137   Gam-like  

Niastella koreensis GR20-10 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|375149346|ref|YP_005011787.1|   6.54e-24   13-164   Gam-like  

Marivirga tractuosa DSM 4126 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|313677541|ref|YP_004055537.1|   0.0000876   123-192   Gam-like  

Prevotella intermedia 17 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|387132106|ref|YP_006298078.1|   8.24e-35   14-181   Gam-like  
gi|387132810|ref|YP_006298782.1|   1.31e-34   14-181   Gam-like  

Alistipes finegoldii DSM 17242 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|390946093|ref|YP_006409853.1|   1.02e-32   14-167   Gam-like  

  1 2 3 4 5 6   Next Last
Showing genomes 1 to 25 of 147

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Select to display   Genome       Domains   Proteins
No Yes ALL   11382 11382
No Yes Rhodnius prolixus 22   1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Naegleria gruberi   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   4 4
No Yes Desulfotomaculum ruminis DSM 2154   1 1
No Yes Eubacterium limosum KIST612   2 2
No Yes Clostridium novyi NT   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Mahella australiensis 50-1 BON   3 3
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus buchneri   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Listeria innocua Clip11262   1 1
No Yes Geobacillus thermoglucosidasius C56-YS93   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus clausii KSM-K16   2 2
No Yes Niastella koreensis GR20-10   1 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Prevotella intermedia 17   2 2
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Campylobacter hominis ATCC BAA-381   1 1
No Yes Helicobacter hepaticus ATCC 51449   1 1
No Yes Helicobacter felis ATCC 49179   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Neisseria meningitidis FAM18   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Gallibacterium anatis UMN179   1 1
No Yes Haemophilus parasuis SH0165   1 1
No Yes Haemophilus ducreyi 35000HP   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Clostridium botulinum BKT015925   1 1
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   1 1
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Lactobacillus plantarum subsp. plantarum P-8   1 1
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis CV56   1 1
No Yes Lactococcus lactis subsp. lactis Il1403   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Listeria monocytogenes M7   1 1
No Yes Listeria monocytogenes J1-220   2 2
No Yes Listeria monocytogenes SLCC2479   1 1
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   1 1
No Yes Listeria monocytogenes 08-5578   1 1
No Yes Listeria monocytogenes 08-5923   1 1
No Yes Listeria monocytogenes L99   1 1
No Yes Listeria monocytogenes HCC23   1 1
No Yes Listeria monocytogenes FSL R2-561   2 2
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Staphylococcus aureus CA-347   1 1
No Yes Staphylococcus aureus Bmb9393   1 1
No Yes Staphylococcus aureus subsp. aureus Z172   1 1
No Yes Staphylococcus aureus subsp. aureus SA957   1 1
No Yes Staphylococcus aureus subsp. aureus M013   1 1
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   1 1
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Campylobacter jejuni RM1221   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2544   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2538   1 1
No Yes Campylobacter jejuni subsp. jejuni 00-2425   1 1
No Yes Campylobacter jejuni subsp. jejuni ICDCCJ07001   1 1
No Yes Campylobacter jejuni subsp. jejuni S3   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Geobacter sp. M18   1 1
No Yes Neisseria meningitidis WUE 2594   1 1
No Yes Neisseria meningitidis G2136   1 1
No Yes Neisseria meningitidis M01-240355   1 1
No Yes Neisseria meningitidis 8013   1 1
No Yes Neisseria meningitidis 053442   1 1
No Yes Neisseria meningitidis Z2491   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Mannheimia succiniciproducens MBEL55E   1 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   1 1
No Yes Mannheimia haemolytica USMARC_2286   1 1
No Yes Mannheimia haemolytica M42548   1 1
No Yes Mannheimia haemolytica D174   1 1
No Yes Mannheimia haemolytica D153   1 1
No Yes Mannheimia haemolytica USDA-ARS-USMARC-183   1 1
No Yes Haemophilus parasuis ZJ0906   1 1
No Yes Haemophilus influenzae F3031   1 1
No Yes Haemophilus influenzae Rd KW20   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   6 6
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   3 3
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   9647 9645
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   49 49
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1338 1337
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   8 8
No Yes NCBI plasmid sequences (Plasmids)   6 6
No Yes NCBI viral sequences (Viral)   31 31
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   2 2
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4 4
No Yes TargetDB (Targets)   8 8
No Yes The Salmonella enterica Pan-genome (meta-genome)   2 2
No Yes UniProt viral sequences (Viral)   20 20

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