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Spectrin repeat family domain assignments


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View all assignments containing a Spectrin repeat domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   45379 45379
No Yes Homo sapiens 76_38 Human 103 36
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 31 9
No Yes Gorilla gorilla 76_3.1 Western gorilla 42 13
No Yes Pongo abelii 76_2 Sumatran orangutan 28 10
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 27 9
No Yes Papio anubis 76 Olive baboon 31 9
No Yes Macaca mulatta 76_1 Rhesus monkey 52 15
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 115 34
No Yes Otolemur garnettii 76_3 Small-eared galago 30 9
No Yes Microcebus murinus 76_1 Gray mouse lemur 27 9
No Yes Rattus norvegicus 76_5.0 Norway rat 31 10
No Yes Mus musculus 76_38 House mouse 67 21
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 19 8
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 23 9
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 31 9
No Yes Cavia porcellus 76_3 Domestic guinea pig 33 10
No Yes Oryctolagus cuniculus 76_2 Rabbit 30 9
No Yes Ochotona princeps 76 American pika 25 8
No Yes Tupaia belangeri 76 Northern tree shrew 25 10
No Yes Sus scrofa 76_10.2 Pig 37 10
No Yes Bos taurus 76_3.1 Cattle 30 9
No Yes Ovis aries 76_3.1 Sheep 34 10
No Yes Vicugna pacos 76_1 Alpaca 11 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 27 8
No Yes Mustela putorius furo 76_1.0 Domestic ferret 32 9
No Yes Ailuropoda melanoleuca 76_1 Giant panda 39 12
No Yes Canis familiaris 76_3.1 Dog 45 14
No Yes Felis catus 76_6.2 Domestic cat 34 10
No Yes Equus caballus 76_2 Horse 65 20
No Yes Myotis lucifugus 76_2.0 Little brown bat 30 9
No Yes Pteropus vampyrus 76_1 Large flying fox 24 8
No Yes Sorex araneus 76_1 European shrew 19 8
No Yes Erinaceus europaeus 76 Western European hedgehog 14 6
No Yes Procavia capensis 76_1 Cape rock hyrax 23 8
No Yes Loxodonta africana 76_3 African savanna elephant 50 15
No Yes Echinops telfairi 76 Small Madagascar hedgehog 23 7
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 57 15
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 13 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 22 8
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 50 15
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 32 9
No Yes Ornithorhynchus anatinus 76_5 Platypus 25 10
No Yes Saccoglossus kowalevskii v3.0   61 14
No Yes Petromyzon marinus 76_7.0 Sea lamprey 12 6
No Yes Meleagris gallopavo 76_2 Turkey 29 9
No Yes Gallus gallus 76_4 Chicken 27 9
No Yes Anas platyrhynchos 76_1.0 Mallard 17 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 18 5
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 27 8
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 29 8
No Yes Anolis carolinensis 76_2.0 Green anole 25 9
No Yes Xenopus laevis African clawed frog 60 19
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 31 9
No Yes Latimeria chalumnae 76_1 Coelacanth 39 11
No Yes Lepisosteus oculatus 76 Spotted gar 43 14
No Yes Gadus morhua 76_1 Atlantic cod 26 9
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 49 14
No Yes Takifugu rubripes 76_4 Torafugu 93 34
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 49 16
No Yes Oryzias latipes 76_1 Japanese medaka 37 11
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 29 10
No Yes Poecilia formosa 76 Amazon molly 27 8
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 49 14
No Yes Astyanax mexicanus 76 Mexican tetra 39 12
No Yes Danio rerio 76_9 Zebrafish 49 16
No Yes Oikopleura dioica   4 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 54 19
No Yes Ciona intestinalis 76 Vase tunicate 10 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 9 4
No Yes Adineta vaga   26 9
No Yes Octopus bimaculoides 280   21 6
No Yes Crassostrea gigas 22 Pacific oyster 14 4
No Yes Lottia gigantea Owl limpet 11 3
No Yes Helobdella robusta   18 6
No Yes Capitella sp. I   13 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 3
No Yes Heliconius melpomene Postman butterfly 7 3
No Yes Bombyx mori Domestic silkworm 8 4
No Yes Nasonia vitripennis Jewel wasp 8 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 29 12
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 3
No Yes Linepithema humile v1.1 Argentine ant 8 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 3
No Yes Solenopsis invicta v.2.2.3 Red fire ant 10 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 10 3
No Yes Atta cephalotes v1.1   11 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 10 3
No Yes Lucilia cuprina Australian sheep blowfly 14 4
No Yes Drosophila grimshawi 1.3   10 3
No Yes Drosophila willistoni 1.3   10 3
No Yes Drosophila pseudoobscura 2.13   9 3
No Yes Drosophila persimilis 1.3   5 4
No Yes Drosophila suzukii   9 3
No Yes Drosophila yakuba 1.3   10 3
No Yes Drosophila simulans 1.3   7 2
No Yes Drosophila sechellia 1.3   8 3
No Yes Drosophila melanogaster 76_5 Fruit fly 57 14
No Yes Drosophila erecta 1.3   10 3
No Yes Drosophila ananassae 1.3   11 3
No Yes Drosophila virilis 1.2   10 3
No Yes Drosophila mojavensis 1.3   11 3
No Yes Megaselia scalaris 22   8 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 11 3
No Yes Culex pipiens quinquefasciatus Southern house mosquito 10 3
No Yes Anopheles darlingi 22 American malaria mosquito 5 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 10 3
No Yes Tribolium castaneum 3.0 Red flour beetle 11 3
No Yes Pediculus humanus corporis (Early assembly) Human body louse 13 4
No Yes Acyrthosiphon pisum Pea aphid 19 5
No Yes Rhodnius prolixus 22   10 3
No Yes Daphnia pulex Common water flea 12 3
No Yes Strigamia maritima 22   11 3
No Yes Sarcoptes scabiei   8 3
No Yes Tetranychus urticae Two-spotted spider mite 13 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 8 3
No Yes Pristionchus pacificus   5 3
No Yes Meloidogyne incognita Southern root-knot nematode 5 2
No Yes Meloidogyne hapla   4 1
No Yes Onchocerca volvulus 22   10 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 17 7
No Yes Caenorhabditis japonica   10 3
No Yes Caenorhabditis brenneri   15 4
No Yes Caenorhabditis remanei   9 3
No Yes Caenorhabditis elegans 76_235 Roundworm 33 10
No Yes Caenorhabditis briggsae 2   8 3
No Yes Trichinella spiralis 22   13 5
No Yes Hymenolepis microstoma   11 4
No Yes Echinococcus multilocularis   13 5
No Yes Echinococcus granulosus   11 4
No Yes Taenia solium Pork tapeworm 10 4
No Yes Schistosoma mansoni   18 6
No Yes Mnemiopsis leidyi Sea walnut 2 1
No Yes Acropora digitifera v1.0   7 7
No Yes Nematostella vectensis 1.0 Starlet sea anemone 7 2
No Yes Hydra vulgaris   4 1
No Yes Amphimedon queenslandica   6 3
No Yes Trichoplax adhaerens   5 5
No Yes Proterospongia sp. ATCC 50818   4 2
No Yes Monosiga brevicollis   2 1
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 46 12
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 26 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 18 5
No Yes Ascaris suum Victoria/Ghent Pig roundworm 9 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 18 6
No Yes Homo sapiens 75_37 (old version GRC) Human 95 33
No Yes Homo sapiens (NCBI version) Human 53 15
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 30 9
No Yes Loa loa v3.3 (Request) Eye worm 10 4
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 8 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 10 3
No Yes Homo sapiens 69_37 Human 40 11
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 31 9
No Yes Gorilla gorilla 69_3.1 Western gorilla 31 9
No Yes Pongo abelii 69_2 Sumatran orangutan 28 10
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 27 9
No Yes Macaca mulatta 69_1 Rhesus monkey 31 9
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 32 9
No Yes Otolemur garnettii 69_3 Small-eared galago 30 9
No Yes Microcebus murinus 69_1 Gray mouse lemur 27 9
No Yes Rattus norvegicus 69_3.4 Norway rat 32 9
No Yes Mus musculus 69_38 House mouse 30 9
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 19 8
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 23 9
No Yes Cavia porcellus 69_3 Domestic guinea pig 31 9
No Yes Oryctolagus cuniculus 69_2 Rabbit 30 9
No Yes Ochotona princeps 69 American pika 25 8
No Yes Tupaia belangeri 69 Northern tree shrew 25 10
No Yes Sus scrofa 69_10.2 Pig 29 8
No Yes Bos taurus 69_3.1 Cattle 30 9
No Yes Vicugna pacos 69_1 Alpaca 11 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 27 8
No Yes Mustela putorius furo 69_1.0 Domestic ferret 32 9
No Yes Ailuropoda melanoleuca 69_1 Giant panda 31 9
No Yes Canis familiaris 69_3.1 Dog 34 10
No Yes Felis catus 69 Domestic cat 22 8
No Yes Equus caballus 69_2 Horse 31 9
No Yes Myotis lucifugus 69_2.0 Little brown bat 30 9
No Yes Pteropus vampyrus 69_1 Large flying fox 24 8
No Yes Sorex araneus 69_1 European shrew 19 8
No Yes Erinaceus europaeus 69 Western European hedgehog 14 6
No Yes Procavia capensis 69_1 Cape rock hyrax 23 8
No Yes Loxodonta africana 69_3 African savanna elephant 30 9
No Yes Echinops telfairi 69 Small Madagascar hedgehog 23 7
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 16 8
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 13 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 22 8
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 29 9
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 32 9
No Yes Ornithorhynchus anatinus 69_5 Platypus 21 9
No Yes Petromyzon marinus 69_7.0 Sea lamprey 12 6
No Yes Meleagris gallopavo 69_2 Turkey 17 5
No Yes Gallus gallus 69_2 Chicken 16 5
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 18 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 25 7
No Yes Anolis carolinensis 69_2.0 Green anole 25 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 27 8
No Yes Latimeria chalumnae 69_1 Coelacanth 28 8
No Yes Gadus morhua 69_1 Atlantic cod 26 9
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 32 10
No Yes Takifugu rubripes 69_4 Torafugu 32 10
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 29 9
No Yes Oryzias latipes 69_1 Japanese medaka 29 9
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 29 10
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 31 9
No Yes Danio rerio 69_9 Zebrafish 32 10
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 6 2
No Yes Ciona intestinalis 69 Vase tunicate 7 3
No Yes Drosophila melanogaster 69_5 Fruit fly 10 3
No Yes Caenorhabditis elegans 69_215 Roundworm 11 3
No Yes NCBI 2017_08 genome   23448 6650
No Yes STRING v9.0.5 (STRING)   930 292
No Yes Uniprot 2018_03 genome   13132 4555
No Yes PDB chains (SCOP 1.75) (PDB)   20 10
No Yes Protein Data Bank (all PDB sequenc)   34 17
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   121 121
No Yes TargetDB (Targets)   23 9

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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