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Bacterial GAP domain superfamily domain assignments
in
all genomes

Network of domain occurrence in all genomes

Assignment details

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25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 79
  1 2 3 4   Next Last

Aeromonas salmonicida subsp. salmonicida A449 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145301097|ref|YP_001143938.1|   2.22e-52   92-225   Bacterial GAP domain  
 
Weak hits:
gi|145298490|ref|YP_001141331.1|   0.00294   36-144   Bacterial GAP domain  

Yersinia pestis Pestoides F has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145597176|ref|YP_001154640.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia enterocolitica subsp. enterocolitica 8081 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|122815839|ref|YP_001004105.1|   6.8e-49   101-219   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|224584656|ref|YP_002638454.1|   6.67e-52   136-270   Bacterial GAP domain  

Pseudomonas aeruginosa UCBPP-PA14 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116053766|ref|YP_788201.1|   1.83e-51   100-231   Bacterial GAP domain  

Morganella morganii subsp. morganii KT has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|455739543|ref|YP_007505809.1|   0.0000262   100-195   Bacterial GAP domain  

Yersinia pseudotuberculosis PB1/+ has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|186897541|ref|YP_001874652.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pseudotuberculosis IP 32953 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|51593869|ref|YP_068436.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis biovar Microtus str. 91001 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|45478574|ref|NP_995401.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis Z176003 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|294496811|ref|YP_003560508.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pestis D182038 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384124323|ref|YP_005506930.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pestis D106004 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384120528|ref|YP_005503149.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pestis biovar Medievalis str. Harbin 35 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384412641|ref|YP_005622005.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis Antiqua has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|108793693|ref|YP_636848.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis Angola has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|162417742|ref|YP_001604439.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis CO92 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|16082697|ref|NP_395143.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia enterocolitica subsp. palearctica 105.5R(r) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|332163612|ref|YP_004424954.1|   1.83e-48   76-194   Bacterial GAP domain  

Yersinia enterocolitica subsp. palearctica Y11 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386307379|ref|YP_006007895.1|   1.83e-48   76-194   Bacterial GAP domain  

Salmonella bongori N268-08 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526228854|ref|YP_008323497.1|   4.19e-38   156-281   Bacterial GAP domain  

Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|161502078|ref|YP_001569190.1|   4.32e-42   148-277   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526221298|ref|YP_008267084.1|   7.19e-52   157-291   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|452123295|ref|YP_007473543.1|   3.27e-49   157-291   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|194734059|ref|YP_002115831.1|   1.7e-49   149-283   Bacterial GAP domain  

Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525858667|ref|YP_008262009.1|   7.85e-50   157-291   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|207858141|ref|YP_002244792.1|   7.19e-52   157-291   Bacterial GAP domain  

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Showing genomes 1 to 25 of 79

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View all assignments containing a Bacterial GAP domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   11055 11055
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   10630 10629
No Yes STRING v9.0.5 (STRING)   29 29
No Yes Uniprot 2018_03 genome   213 213
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   22 22
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   24 24
No Yes The Salmonella enterica Pan-genome (meta-genome)   27 27

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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