SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Bacterial GAP domain superfamily domain assignments
in
all bacterial and archaeal genomes

Network of domain occurrence in all genomes


Assignment details

(show help)

25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 69
  1 2 3   Next Last

Aeromonas salmonicida subsp. salmonicida A449 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145301097|ref|YP_001143938.1|   2.22e-52   92-225   Bacterial GAP domain  
 
Weak hits:
gi|145298490|ref|YP_001141331.1|   0.00294   36-144   Bacterial GAP domain  

Yersinia pestis Pestoides F has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145597176|ref|YP_001154640.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia enterocolitica subsp. enterocolitica 8081 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|122815839|ref|YP_001004105.1|   6.8e-49   101-219   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|224584656|ref|YP_002638454.1|   6.67e-52   136-270   Bacterial GAP domain  

Pseudomonas aeruginosa UCBPP-PA14 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116053766|ref|YP_788201.1|   1.83e-51   100-231   Bacterial GAP domain  

Morganella morganii subsp. morganii KT has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|455739543|ref|YP_007505809.1|   0.0000262   100-195   Bacterial GAP domain  

Yersinia pseudotuberculosis PB1/+ has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|186897541|ref|YP_001874652.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pseudotuberculosis IP 32953 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|51593869|ref|YP_068436.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis biovar Microtus str. 91001 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|45478574|ref|NP_995401.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis Z176003 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|294496811|ref|YP_003560508.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pestis D182038 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384124323|ref|YP_005506930.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pestis D106004 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384120528|ref|YP_005503149.1|   1.1e-49   76-194   Bacterial GAP domain  

Yersinia pestis biovar Medievalis str. Harbin 35 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384412641|ref|YP_005622005.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis Antiqua has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|108793693|ref|YP_636848.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis Angola has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|162417742|ref|YP_001604439.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia pestis CO92 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|16082697|ref|NP_395143.1|   1.57e-49   101-219   Bacterial GAP domain  

Yersinia enterocolitica subsp. palearctica 105.5R(r) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|332163612|ref|YP_004424954.1|   1.83e-48   76-194   Bacterial GAP domain  

Yersinia enterocolitica subsp. palearctica Y11 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386307379|ref|YP_006007895.1|   1.83e-48   76-194   Bacterial GAP domain  

Salmonella bongori N268-08 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526228854|ref|YP_008323497.1|   4.19e-38   156-281   Bacterial GAP domain  

Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|161502078|ref|YP_001569190.1|   4.32e-42   148-277   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|526221298|ref|YP_008267084.1|   7.19e-52   157-291   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|452123295|ref|YP_007473543.1|   3.27e-49   157-291   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|194734059|ref|YP_002115831.1|   1.7e-49   149-283   Bacterial GAP domain  

Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|525858667|ref|YP_008262009.1|   7.85e-50   157-291   Bacterial GAP domain  

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|207858141|ref|YP_002244792.1|   7.19e-52   157-291   Bacterial GAP domain  

  1 2 3   Next Last
Showing genomes 1 to 25 of 69

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Bacterial GAP domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   11055 11055
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   10630 10629
No Yes STRING v9.0.5 (STRING)   29 29
No Yes Uniprot 2018_03 genome   213 213
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   22 22
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   24 24
No Yes The Salmonella enterica Pan-genome (meta-genome)   27 27

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]