SUPERFAMILY 1.75 HMM library and genome assignments server

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Swaposin family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   1173 1173
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 9 9
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   19 19
No Yes Citrus clementina v165   4 4
No Yes Citrus sinensis v154 Sweet orange 16 16
No Yes Thellungiella halophila v173   2 2
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   2 2
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 5 5
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 5 5
No Yes Cucumis sativus v122 Cucumber 7 7
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Prunus persica v139 Peach 3 3
No Yes Linum usitatissimum v200 Flax 6 6
No Yes Manihot esculenta v147 Cassava 5 5
No Yes Populus trichocarpa v156 Black cottonwood 4 4
No Yes Vitis vinifera Wine grape 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 2 2
No Yes Actinidia chinensis Hongyang   3 3
No Yes Aquilegia coerulea v195   7 7
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 6 6
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 4 4
No Yes Oryza barthii 22 African wild rice 8 8
No Yes Oryza meridionalis 22   3 3
No Yes Oryza glumaepatula 22   5 5
No Yes Oryza glaberrima African rice 3 3
No Yes Oryza punctata 22   4 4
No Yes Oryza nivara 22   7 7
No Yes Oryza brachyantha 22 Malo sina 3 3
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 10 10
No Yes Oryza sativa v193 Rice 10 10
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 3
No Yes Panicum virgatum v202 Switchgrass 11 11
No Yes Setaria italica v164 Foxtail millet 8 8
No Yes Zea mays subsp. mays Maize 8 8
No Yes Zea mays v181 Maize 14 14
No Yes Musa balbisiana Balbis banana 6 6
No Yes Musa acuminata 22 Wild Malaysian banana 6 6
No Yes Amborella trichopoda 22   2 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 3 3
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   3 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 3 3
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes NCBI 2017_08 genome   378 378
No Yes STRING v9.0.5 (STRING)   21 21
No Yes Uniprot 2018_03 genome   392 392
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   3 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6

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