Select to display Genome Domains Proteins No ALL 198369 198369 Yes Homo sapiens 76_38 Human 252 170 Yes Pan troglodytes 76_2.1.4 Chimpanzee 72 43 Yes Gorilla gorilla 76_3.1 Western gorilla 96 58 Yes Pongo abelii 76_2 Sumatran orangutan 77 46 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 80 47 Yes Papio anubis 76 Olive baboon 87 52 Yes Macaca mulatta 76_1 Rhesus monkey 106 73 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 146 94 Yes Otolemur garnettii 76_3 Small-eared galago 78 44 Yes Microcebus murinus 76_1 Gray mouse lemur 61 40 Yes Rattus norvegicus 76_5.0 Norway rat 69 41 Yes Mus musculus 76_38 House mouse 132 81 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 56 35 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 70 43 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 100 63 Yes Cavia porcellus 76_3 Domestic guinea pig 77 48 Yes Oryctolagus cuniculus 76_2 Rabbit 76 49 Yes Ochotona princeps 76 American pika 58 34 Yes Tupaia belangeri 76 Northern tree shrew 60 38 Yes Sus scrofa 76_10.2 Pig 78 52 Yes Bos taurus 76_3.1 Cattle 78 47 Yes Ovis aries 76_3.1 Sheep 84 48 Yes Vicugna pacos 76_1 Alpaca 43 24 Yes Tursiops truncatus 76_1 Bottlenose dolphin 65 38 Yes Mustela putorius furo 76_1.0 Domestic ferret 68 38 Yes Ailuropoda melanoleuca 76_1 Giant panda 71 42 Yes Canis familiaris 76_3.1 Dog 94 55 Yes Felis catus 76_6.2 Domestic cat 69 39 Yes Equus caballus 76_2 Horse 67 39 Yes Myotis lucifugus 76_2.0 Little brown bat 86 54 Yes Pteropus vampyrus 76_1 Large flying fox 65 41 Yes Sorex araneus 76_1 European shrew 55 37 Yes Erinaceus europaeus 76 Western European hedgehog 49 30 Yes Procavia capensis 76_1 Cape rock hyrax 63 39 Yes Loxodonta africana 76_3 African savanna elephant 85 51 Yes Echinops telfairi 76 Small Madagascar hedgehog 53 33 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 89 51 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 51 31 Yes Macropus eugenii 76_1.0 Tammar wallaby 52 31 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 82 47 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 88 50 Yes Ornithorhynchus anatinus 76_5 Platypus 69 40 Yes Saccoglossus kowalevskii v3.0 94 55 Yes Petromyzon marinus 76_7.0 Sea lamprey 35 21 Yes Meleagris gallopavo 76_2 Turkey 61 40 Yes Gallus gallus 76_4 Chicken 63 38 Yes Anas platyrhynchos 76_1.0 Mallard 60 37 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 62 37 Yes Ficedula albicollis 76_1.0 Collared flycatcher 64 38 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 67 38 Yes Anolis carolinensis 76_2.0 Green anole 60 36 Yes Xenopus laevis African clawed frog 264 148 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 108 67 Yes Latimeria chalumnae 76_1 Coelacanth 86 50 Yes Lepisosteus oculatus 76 Spotted gar 76 46 Yes Gadus morhua 76_1 Atlantic cod 86 49 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 93 57 Yes Takifugu rubripes 76_4 Torafugu 230 133 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 105 67 Yes Oryzias latipes 76_1 Japanese medaka 90 59 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 82 54 Yes Poecilia formosa 76 Amazon molly 88 53 Yes Oreochromis niloticus 76_1.0 Nile tilapia 113 70 Yes Astyanax mexicanus 76 Mexican tetra 83 49 Yes Danio rerio 76_9 Zebrafish 125 82 Yes Oikopleura dioica 46 27 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 44 27 Yes Ciona intestinalis 76 Vase tunicate 38 21 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 57 38 Yes Adineta vaga 115 70 Yes Octopus bimaculoides 280 57 36 Yes Crassostrea gigas 22 Pacific oyster 46 27 Yes Lottia gigantea Owl limpet 44 26 Yes Helobdella robusta 52 31 Yes Capitella sp. I 47 29 Yes Danaus plexippus OGS1.0 Monarch butterfly 42 27 Yes Heliconius melpomene Postman butterfly 40 23 Yes Bombyx mori Domestic silkworm 32 24 Yes Nasonia vitripennis Jewel wasp 32 18 Yes Apis mellifera 38.2d (Not maintained) Honey bee 76 45 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 33 21 Yes Linepithema humile v1.1 Argentine ant 33 21 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 35 23 Yes Solenopsis invicta v.2.2.3 Red fire ant 36 24 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 35 22 Yes Atta cephalotes v1.1 35 22 Yes Camponotus floridanus v3.3 Florida carpenter ant 33 21 Yes Lucilia cuprina Australian sheep blowfly 33 20 Yes Drosophila grimshawi 1.3 47 26 Yes Drosophila willistoni 1.3 40 23 Yes Drosophila pseudoobscura 2.13 46 27 Yes Drosophila persimilis 1.3 44 25 Yes Drosophila suzukii 39 24 Yes Drosophila yakuba 1.3 40 23 Yes Drosophila simulans 1.3 35 21 Yes Drosophila sechellia 1.3 34 20 Yes Drosophila melanogaster 76_5 Fruit fly 91 55 Yes Drosophila erecta 1.3 35 21 Yes Drosophila ananassae 1.3 35 20 Yes Drosophila virilis 1.2 39 23 Yes Drosophila mojavensis 1.3 37 21 Yes Megaselia scalaris 22 9 7 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 45 25 Yes Culex pipiens quinquefasciatus Southern house mosquito 45 29 Yes Anopheles darlingi 22 American malaria mosquito 31 20 Yes Anopheles gambiae 49_3j African malaria mosquito 41 25 Yes Tribolium castaneum 3.0 Red flour beetle 38 24 Yes Pediculus humanus corporis Human body louse 33 21 Yes Acyrthosiphon pisum Pea aphid 35 21 Yes Rhodnius prolixus 22 34 21 Yes Daphnia pulex Common water flea 58 36 Yes Strigamia maritima 22 54 30 Yes Sarcoptes scabiei 29 17 Yes Tetranychus urticae Two-spotted spider mite 34 20 Yes Ixodes scapularis Black-legged tick 37 25 Yes Pristionchus pacificus 38 27 Yes Meloidogyne incognita Southern root-knot nematode 39 26 Yes Meloidogyne hapla 25 15 Yes Onchocerca volvulus 22 36 22 Yes Brugia malayi WS250 Agent of lymphatic filariasis 46 29 Yes Caenorhabditis japonica 33 21 Yes Caenorhabditis brenneri 59 34 Yes Caenorhabditis remanei 57 34 Yes Caenorhabditis elegans 76_235 Roundworm 93 66 Yes Caenorhabditis briggsae 2 36 23 Yes Trichinella spiralis 22 31 19 Yes Hymenolepis microstoma 34 21 Yes Echinococcus multilocularis 48 28 Yes Echinococcus granulosus 49 28 Yes Taenia solium Pork tapeworm 45 28 Yes Schistosoma mansoni 39 23 Yes Mnemiopsis leidyi Sea walnut 34 21 Yes Thelohanellus kitauei 16 11 Yes Acropora digitifera v1.0 30 21 Yes Nematostella vectensis 1.0 Starlet sea anemone 43 27 Yes Hydra vulgaris 31 17 Yes Amphimedon queenslandica 39 26 Yes Trichoplax adhaerens 38 23 Yes Proterospongia sp. ATCC 50818 33 21 Yes Monosiga brevicollis 26 19 Yes Sphaeroforma arctica JP610 36 25 Yes Capsaspora owczarzaki ATCC 30864 32 21 Yes Conidiobolus coronatus NRRL28638 v1.0 37 23 Yes Mortierella verticillata NRRL 6337 38 23 Yes Phycomyces blakesleeanus 53 43 Yes Rhizopus oryzae RA 99-880 46 40 Yes Mucor circinelloides 40 32 Yes Rhizomucor miehei CAU432 32 23 Yes Malassezia globosa CBS 7966 38 22 Yes Sporisorium reilianum 22 24 14 Yes Ustilago maydis 23 13 Yes Mixia osmundae IAM 14324 v1.0 25 15 Yes Cronartium quercuum f. sp. fusiforme G11 v1.0 30 17 Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3 31 21 Yes Melampsora laricis-populina 26 16 Yes Rhodotorula graminis WP1 v1.0 27 17 Yes Sporobolomyces roseus IAM 13481 22 15 Yes Microbotryum violaceum 22 28 18 Yes Wallemia sebi v1.0 27 17 Yes Sphaerobolus stellatus v1.0 31 20 Yes Piloderma croceum F 1598 v1.0 28 18 Yes Serpula lacrymans var. lacrymans S7.9 37 21 Yes Coniophora puteana 30 21 Yes Hydnomerulius pinastri v2.0 26 16 Yes Paxillus rubicundulus Ve08.2h10 v1.0 28 18 Yes Pisolithus microcarpus 441 v1.0 31 20 Yes Pisolithus tinctorius Marx 270 v1.0 30 19 Yes Scleroderma citrinum Foug A v1.0 39 25 Yes Coprinopsis cinerea okayama7 130 v3 33 22 Yes Pleurotus ostreatus Oyster mushroom 27 17 Yes Amanita thiersii Skay4041 v1.0 29 18 Yes Amanita muscaria Koide v1.0 Fly agaric 29 18 Yes Galerina marginata v1.0 33 21 Yes Hebeloma cylindrosporum h7 v2.0 32 21 Yes Laccaria bicolor S238N-H82 34 22 Yes Agaricus bisporus var. bisporus 27 16 Yes Schizophyllum commune 32 22 Yes Stereum hirsutum FP-91666 SS1 v1.0 26 16 Yes Heterobasidion annosum 28 17 Yes Gloeophyllum trabeum v1.0 28 18 Yes Punctularia strigosozonata v1.0 22 13 Yes Sebacina vermifera MAFF 305830 v1.0 25 15 Yes Fomitiporia mediterranea v1.0 28 18 Yes Tulasnella calospora AL13/4D v1.0 27 16 Yes Postia placenta 50 34 Yes Wolfiporia cocos MD-104 SS10 v1.0 28 18 Yes Fomitopsis pinicola v1.0 34 24 Yes Fomitopsis pinicola FP-58527 SS1 v3.0 32 22 Yes Phanerochaete chrysosporium RP-78 2.1 27 18 Yes Dichomitus squalens 31 20 Yes Trametes versicolor v1.0 29 19 Yes Tremella mesenterica Witches' butter 20 12 Yes Daldinia eschscholzii EC12 v1.0 23 13 Yes Apiospora montagnei NRRL 25634 v1.0 28 17 Yes Magnaporthe poae ATCC 64411 22 23 14 Yes Magnaporthe grisea 70-15 27 16 Yes Podospora anserina 24 14 Yes Sporotrichum thermophile ATCC 42464 22 12 Yes Thielavia terrestris NRRL 8126 26 16 Yes Chaetomium globosum CBS 148.51 22 14 Yes Neurospora tetrasperma 25 15 Yes Neurospora discreta FGSC 8579 25 15 Yes Neurospora crassa OR74A 27 16 Yes Cryphonectria parasitica Chestnut blight fungus 22 12 Yes Verticillium albo-atrum VaMs.102 24 15 Yes Verticillium dahliae VdLs.17 26 16 Yes Acremonium alcalophilum v 1.0 24 14 Yes Glomerella graminicola 22 24 14 Yes Fusarium graminearum 23 13 Yes Nectria haematococca mpVI 29 17 Yes Fusarium oxysporum f. sp. lycopersici 4286 28 16 Yes Fusarium verticillioides 7600 22 13 Yes Trichoderma asperellum CBS 433.97 v1.0 24 14 Yes Trichoderma atroviride 24 14 Yes Trichoderma citrinoviride v1.0 23 13 Yes Trichoderma reesei 1.2 24 14 Yes Trichoderma virens Gv29-8 25 15 Yes Trichoderma longibrachiatum ATCC 18648 v1.0 23 14 Yes Trichoderma harzianum CBS 226.95 v1.0 24 14 Yes Amorphotheca resinae v1.0 Creosote fungus 25 15 Yes Botrytis cinerea B05.10 18 11 Yes Sclerotinia sclerotiorum 22 12 Yes Blumeria graminis 22 21 12 Yes Didymella exigua CBS 183.55 v1.0 24 14 Yes Leptosphaeria maculans 22 25 15 Yes Setosphaeria turcica v1.0 30 18 Yes Cochliobolus miyabeanus ATCC 44560 v1.0 24 14 Yes Cochliobolus victoriae FI3 v1.0 24 14 Yes Cochliobolus carbonum 26-R-13 v1.0 24 14 Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 25 14 Yes Alternaria brassicicola 25 15 Yes Cochliobolus lunatus m118 v2.0 24 14 Yes Pyrenophora teres f. teres 22 24 14 Yes Pyrenophora tritici-repentis 24 14 Yes Stagonospora nodorum 23 15 Yes Mycosphaerella graminicola IPO323 25 15 Yes Zasmidium cellare ATCC 36951 v1.0 25 15 Yes Dothistroma septosporum 24 14 Yes Septoria musiva v1.0 24 14 Yes Mycosphaerella fijiensis CIRAD86 23 13 Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 25 15 Yes Paracoccidioides brasiliensis Pb18 23 13 Yes Coccidioides posadasii RMSCC 3488 23 13 Yes Coccidioides immitis RS 23 13 Yes Ajellomyces dermatitidis SLH14081 22 13 Yes Histoplasma capsulatum class NAmI strain WU24 19 11 Yes Microsporum canis CBS 113480 23 13 Yes Trichophyton equinum CBS 127.97 23 13 Yes Trichophyton verrucosum HKI 0517 23 13 Yes Arthroderma benhamiae CBS 112371 21 12 Yes Trichophyton tonsurans CBS 112818 21 13 Yes Trichophyton rubrum CBS 118892 23 13 Yes Uncinocarpus reesii 1704 21 13 Yes Aspergillus zonatus v1.0 25 15 Yes Penicillium chrysogenum Wisconsin 54-1255 29 19 Yes Penicillium chrysogenum v1.0 27 17 Yes Aspergillus acidus v1.0 23 14 Yes Aspergillus fumigatus Af293 26 16 Yes Aspergillus brasiliensis v1.0 26 16 Yes Aspergillus nidulans FGSC A4 27 17 Yes Aspergillus sydowii v1.0 26 16 Yes Aspergillus versicolor v1.0 26 16 Yes Aspergillus glaucus 26 16 Yes Aspergillus carbonarius ITEM 5010 26 16 Yes Neosartorya fischeri NRRL 181 25 16 Yes Aspergillus terreus NIH2624 24 15 Yes Aspergillus tubingensis v1.0 24 15 Yes Aspergillus wentii v1.0 25 15 Yes Aspergillus oryzae RIB40 24 15 Yes Aspergillus niger 22 24 16 Yes Aspergillus niger ATCC 1015 15 9 Yes Aspergillus flavus NRRL3357 26 16 Yes Aspergillus clavatus NRRL 1 24 15 Yes Penicillium marneffei ATCC 18224 30 19 Yes Tuber melanosporum Mel28 22 25 15 Yes Tuber melanosporum Vittad Perigord truffle 26 16 Yes Hansenula polymorpha v2.0 26 16 Yes Dekkera bruxellensis CBS 2499 v2.0 25 15 Yes Pichia membranifaciens v1.0 23 14 Yes Candida tanzawaensis NRRL Y-17324 v1.0 21 14 Yes Candida dubliniensis CD36 25 16 Yes Candida tropicalis MYA-3404 24 16 Yes Candida parapsilosis 27 18 Yes Candida albicans SC5314 25 16 Yes Lodderomyces elongisporus NRRL YB-4239 21 14 Yes Babjeviella inositovora NRRL Y-12698 v1.0 24 16 Yes Pichia stipitis CBS 6054 22 14 Yes Candida guilliermondii ATCC 6260 26 17 Yes Hyphopichia burtonii NRRL Y-1933 v1.0 22 14 Yes Debaromyces hansenii 23 15 Yes Wickerhamomyces anomalus 25 16 Yes Pichia pastoris GS115 21 14 Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1 24 17 Yes Yarrowia lipolytica CLIB122 23 14 Yes Candida lusitaniae ATCC 42720 25 18 Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0 23 15 Yes Vanderwaltozyma polyspora DSM 70294 29 20 Yes Candida glabrata CBS138 31 20 Yes Kluyveromyces thermotolerans CBS 6340 25 17 Yes Lachancea kluyveri 26 17 Yes Kluyveromyces waltii 27 18 Yes Ashbya gossypii ATCC 10895 24 16 Yes Zygosaccharomyces rouxii 28 18 Yes Saccharomyces mikatae MIT 30 20 Yes Saccharomyces paradoxus MIT 31 20 Yes Saccharomyces cerevisiae 76 Baker's yeast 30 19 Yes Saccharomyces bayanus MIT 28 17 Yes Kluyveromyces lactis 24 16 Yes Schizosaccharomyces cryophilus OY26 22 24 13 Yes Schizosaccharomyces octosporus yFS286 24 13 Yes Schizosaccharomyces japonicus yFS275 25 13 Yes Schizosaccharomyces pombe Fission yeast 26 15 Yes Catenaria anguillulae PL171 v1.0 32 24 Yes Allomyces macrogynus ATCC 38327 70 52 Yes Spizellomyces punctatus DAOM BR117 36 23 Yes Dictyostelium discoideum 34 23 Yes Dictyostelium purpureum 31 20 Yes Entamoeba dispar 1.2 25 15 Yes Entamoeba invadens 1.2 21 14 Yes Entamoeba histolytica 1 22 13 Yes Selaginella moellendorffii 78 48 Yes Pinus taeda Loblolly pine 144 92 Yes Picea abies Norway spruce 88 54 Yes Eucalyptus grandis v201 Rose gum 97 60 Yes Theobroma cacao B97-61/B2 v1 Cacao 85 52 Yes Gossypium raimondii v221 354 214 Yes Citrus clementina v165 123 72 Yes Citrus sinensis v154 Sweet orange 137 85 Yes Thellungiella halophila v173 119 68 Yes Brassica rapa Chiifu-401 1.2 Field mustard 182 102 Yes Capsella rubella v183 114 65 Yes Arabidopsis lyrata Lyrate rockcress 114 68 Yes Arabidopsis thaliana 10 Thale cress 127 76 Yes Carica papaya Papaya 68 40 Yes Medicago truncatula Barrel medic 174 103 Yes Phaseolus vulgaris v186 French bean 123 70 Yes Glycine max v109 Soybean 221 131 Yes Cucumis sativus v122 Cucumber 127 77 Yes Fragaria vesca Wild strawberry 103 57 Yes Malus domestica v196 Apple 202 130 Yes Prunus persica v139 Peach 90 51 Yes Linum usitatissimum v200 Flax 137 79 Yes Manihot esculenta v147 Cassava 123 74 Yes Populus trichocarpa v156 Black cottonwood 153 96 Yes Vitis vinifera Wine grape 91 53 Yes Mimulus guttatus v140 Spotted monkey flower 98 58 Yes Solanum lycopersicum v.2.3 Tomato 109 63 Yes Solanum tuberosum Potato 172 105 Yes Actinidia chinensis Hongyang 100 64 Yes Aquilegia coerulea v195 148 91 Yes Triticum urartu 22 72 50 Yes Triticum aestivum 22 Bread wheat 251 163 Yes Aegilops tauschii 22 93 56 Yes Brachypodium distachyon Stiff brome 112 70 Yes Oryza barthii 22 African wild rice 127 69 Yes Oryza meridionalis 22 101 56 Yes Oryza glumaepatula 22 129 75 Yes Oryza glaberrima African rice 76 47 Yes Oryza punctata 22 142 76 Yes Oryza nivara 22 152 82 Yes Oryza brachyantha 22 Malo sina 96 57 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 150 89 Yes Oryza sativa v193 Rice 151 90 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 114 74 Yes Panicum virgatum v202 Switchgrass 182 114 Yes Setaria italica v164 Foxtail millet 105 63 Yes Zea mays subsp. mays Maize 233 155 Yes Zea mays v181 Maize 246 168 Yes Sorghum bicolor Sorghum 98 62 Yes Musa balbisiana Balbis banana 136 83 Yes Musa acuminata 22 Wild Malaysian banana 146 87 Yes Amborella trichopoda 22 48 30 Yes Physcomitrella patens 64 36 Yes Coccomyxa subellipsoidea sp. C-169 v2 26 16 Yes Asterochloris sp. Cgr/DA1pho v1.0 26 17 Yes Chlorella variabilis sp. NC64A 28 17 Yes Chlorella vulgaris 33 21 Yes Volvox carteri f. nagariensis 39 26 Yes Volvox carteri v199 45 29 Yes Chlamydomonas reinhardtii 4.0 41 25 Yes Ostreococcus sp. RCC809 22 12 Yes Ostreococcus lucimarinus CCE9901 26 14 Yes Ostreococcus tauri 23 13 Yes Bathycoccus prasinos 24 13 Yes Micromonas sp. RCC299 21 11 Yes Micromonas pusilla CCMP1545 v3.0 24 13 Yes Cyanidioschyzon merolae strain 10D 22 19 14 Yes Cyanidioschyzon merolae 19 14 Yes Porphyridium purpureum 02_2012 36 27 Yes Thecamonas trahens ATCC 50062 27 17 Yes Bigelowiella natans CCMP2755 22 45 31 Yes Giardia lamblia 2.3 19 15 Yes Cyanophora paradoxa 27 18 Yes Leishmania mexicana 2.4 17 14 Yes Leishmania major strain Friedlin 17 14 Yes Leishmania infantum JPCM5 2.4 17 14 Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4 17 14 Yes Trypanosoma vivax 13 11 Yes Trypanosoma cruzi strain CL Brener 16 12 Yes Trypanosoma congolense 2.4 14 11 Yes Trypanosoma brucei gambiense v4.1 16 14 Yes Trypanosoma brucei TREU927 v4.1 16 14 Yes Ectocarpus siliculosus 36 26 Yes Aureococcus anophagefferens 22 17 Yes Albugo laibachii 22 33 20 Yes Pythium iwayamai DAOM BR242034 22 47 28 Yes Pythium arrhenomanes ATCC 12531 22 37 25 Yes Pythium ultimum v1.7-2 37 23 Yes Pythium aphanidermatum DAOM BR444 22 38 23 Yes Pythium irregulare DAOM BR486 22 42 25 Yes Pythium vexans DAOM BR484 22 34 21 Yes Phytophthora ramorum 1.1 Sudden oak death agent 35 22 Yes Phytophthora sojae 1.1 41 25 Yes Phytophthora infestans T30-4 42 27 Yes Phytophthora capsici 37 24 Yes Hyaloperonospora arabidopsidis 22 31 20 Yes Phaeodactylum tricornutum CCAP 1055/1 43 29 Yes Fragilariopsis cylindrus 75 53 Yes Thalassiosira pseudonana CCMP1335 72 60 Yes Perkinsus marinus ATCC 50983 75 53 Yes Paramecium tetraurelia 204 155 Yes Tetrahymena thermophila SB210 1 58 38 Yes Ichthyophthirius multifiliis strain G5 32 23 Yes Cryptosporidium hominis 16 12 Yes Cryptosporidium muris 17 12 Yes Cryptosporidium parvum Iowa II 17 13 Yes Neospora caninum 13 10 Yes Toxoplasma gondii VEG 14 11 Yes Toxoplasma gondii ME49 14 11 Yes Toxoplasma gondii GT1 11 9 Yes Babesia bovis T2Bo 20 16 Yes Theileria parva 11 8 Yes Theileria annulata 12 9 Yes Plasmodium falciparum 3D7 14 10 Yes Plasmodium vivax SaI-1 7.0 11 8 Yes Plasmodium knowlesi strain H 10 7 Yes Plasmodium yoelii ssp. yoelii 1 11 9 Yes Plasmodium chabaudi 11 8 Yes Plasmodium berghei ANKA 10 7 Yes Symbiodinium minutum clade B1 v1.2 39 27 Yes Naegleria gruberi 33 19 Yes Trichomonas vaginalis 64 44 Yes Guillardia theta CCMP2712 v1.0 56 39 Yes Emiliania huxleyi CCMP1516 58 37 Yes Candidatus Desulforudis audaxviator MP104C 1 1 Yes Clostridium difficile 630 1 1 Yes Mahella australiensis 50-1 BON 1 1 Yes Exiguobacterium sp. MH3 1 1 Yes Exiguobacterium sibiricum 255-15 1 1 Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 1 1 Yes Paenibacillus sp. JDR-2 1 1 Yes Geobacillus thermoleovorans CCB_US3_UF5 1 1 Yes Bacillus sp. JS 1 1 Yes Bacillus amyloliquefaciens FZB42 1 1 Yes Bacillus atrophaeus 1942 1 1 Yes Bacillus subtilis subsp. subtilis str. 168 1 1 Yes Bacillus clausii KSM-K16 1 1 Yes Tannerella forsythia ATCC 43037 1 1 Yes Coxiella burnetii Dugway 5J108-111 1 1 Yes Pseudomonas putida F1 1 1 Yes Nanoarchaeum equitans Kin4-M 2 1 Yes Candidatus Caldiarchaeum subterraneum 6 3 Yes Cenarchaeum symbiosum A 10 5 Yes Candidatus Nitrosopumilus sp. AR2 20 10 Yes Nitrosopumilus maritimus SCM1 16 8 Yes Candidatus Korarchaeum cryptofilum OPF8 4 2 Yes Acidilobus saccharovorans 345-15 3 2 Yes Fervidicoccus fontis Kam940 4 2 Yes Pyrolobus fumarii 1A 4 2 Yes Hyperthermus butylicus DSM 5456 4 2 Yes Thermogladius cellulolyticus 1633 4 2 Yes Ignisphaera aggregans DSM 17230 4 2 Yes Aeropyrum pernix K1 4 2 Yes Ignicoccus hospitalis KIN4/I 2 1 Yes Thermosphaera aggregans DSM 11486 4 2 Yes Staphylothermus hellenicus DSM 12710 4 2 Yes Staphylothermus marinus F1 4 2 Yes Desulfurococcus fermentans DSM 16532 5 3 Yes Desulfurococcus kamchatkensis 1221n 4 2 Yes Desulfurococcus mucosus DSM 2162 5 3 Yes Metallosphaera cuprina Ar-4 4 2 Yes Metallosphaera sedula DSM 5348 4 2 Yes Acidianus hospitalis W1 6 3 Yes Sulfolobus tokodaii str. 7 4 2 Yes Sulfolobus islandicus Y.N.15.51 4 2 Yes Sulfolobus solfataricus P2 4 2 Yes Sulfolobus acidocaldarius DSM 639 4 2 Yes Thermofilum sp. 1910b 4 2 Yes Thermofilum pendens Hrk 5 4 2 Yes Vulcanisaeta moutnovskia 768-28 6 3 Yes Vulcanisaeta distributa DSM 14429 6 3 Yes Caldivirga maquilingensis IC-167 4 2 Yes Pyrobaculum sp. 1860 6 4 Yes Pyrobaculum calidifontis JCM 11548 6 4 Yes Pyrobaculum arsenaticum DSM 13514 6 4 Yes Pyrobaculum oguniense TE7 6 4 Yes Thermoproteus neutrophilus V24Sta 6 4 Yes Pyrobaculum aerophilum str. IM2 6 4 Yes Pyrobaculum islandicum DSM 4184 6 4 Yes Thermoproteus uzoniensis 768-20 6 4 Yes Thermoproteus tenax Kra 1 6 4 Yes halophilic archaeon DL31 18 10 Yes Methanocella arvoryzae MRE50 2 1 Yes Methanocella conradii HZ254 2 1 Yes Methanocella paludicola SANAE 2 1 Yes Methanosaeta harundinacea 6Ac 2 1 Yes Methanosaeta thermophila PT 2 1 Yes Methanosaeta concilii GP6 2 1 Yes Methanosalsum zhilinae DSM 4017 2 1 Yes Methanohalobium evestigatum Z-7303 4 2 Yes Methanococcoides burtonii DSM 6242 2 1 Yes Methanosarcina acetivorans C2A 2 1 Yes Methanosarcina mazei Go1 2 1 Yes Methanosarcina barkeri str. Fusaro 2 1 Yes Methanohalophilus mahii DSM 5219 2 1 Yes Methanosphaerula palustris E1-9c 2 1 Yes Methanoregula boonei 6A8 2 1 Yes Methanospirillum hungatei JF-1 2 1 Yes Methanocorpusculum labreanum Z 2 1 Yes Methanoplanus petrolearius DSM 11571 2 1 Yes Methanoculleus bourgensis MS2 2 1 Yes Methanoculleus marisnigri JR1 2 1 Yes Methanopyrus kandleri AV19 5 2 Yes Ferroglobus placidus DSM 10642 4 2 Yes Archaeoglobus profundus DSM 5631 2 1 Yes Archaeoglobus veneficus SNP6 2 1 Yes Archaeoglobus fulgidus DSM 4304 2 1 Yes Thermococcus sp. 4557 4 2 Yes Thermococcus onnurineus NA1 4 2 Yes Thermococcus kodakarensis KOD1 4 2 Yes Thermococcus gammatolerans EJ3 4 2 Yes Thermococcus sibiricus MM 739 4 2 Yes Thermococcus barophilus MP 6 3 Yes Pyrococcus sp. ST04 4 2 Yes Pyrococcus yayanosii CH1 4 2 Yes Pyrococcus horikoshii OT3 4 2 Yes Pyrococcus abyssi GE5 2 1 Yes Pyrococcus furiosus COM1 4 2 Yes Thermoplasmatales archaeon BRNA1 2 1 Yes Thermoplasma volcanium GSS1 6 3 Yes Thermoplasma acidophilum DSM 1728 6 3 Yes Picrophilus torridus DSM 9790 4 2 Yes Salinarchaeum sp. Harcht-Bsk1 11 6 Yes Halopiger xanaduensis SH-6 19 10 Yes Haloterrigena turkmenica DSM 5511 13 7 Yes Natrinema sp. J7-2 20 11 Yes Natrialba magadii ATCC 43099 15 8 Yes Halorubrum lacusprofundi ATCC 49239 19 10 Yes Haloquadratum walsbyi DSM 16790 17 9 Yes Halogeometricum borinquense DSM 11551 15 8 Yes Haloferax mediterranei ATCC 33500 20 11 Yes Haloferax volcanii DS2 22 12 Yes Halomicrobium mukohataei DSM 12286 11 6 Yes Halorhabdus utahensis DSM 12940 16 9 Yes Natronomonas pharaonis DSM 2160 15 8 Yes Haloarcula hispanica ATCC 33960 17 9 Yes Haloarcula marismortui ATCC 43049 18 10 Yes Halalkalicoccus jeotgali B3 14 8 Yes Halobacterium salinarum R1 17 9 Yes Halobacterium sp. NRC-1 15 8 Yes Methanotorris igneus Kol 5 2 1 Yes Methanocaldococcus sp. FS406-22 2 1 Yes Methanocaldococcus fervens AG86 2 1 Yes Methanocaldococcus vulcanius M7 2 1 Yes methanocaldococcus infernus ME 2 1 Yes Methanocaldococcus jannaschii DSM 2661 2 1 Yes Methanothermococcus okinawensis IH1 2 1 Yes Methanococcus aeolicus Nankai-3 2 1 Yes Methanococcus maripaludis C5 2 1 Yes Methanococcus voltae A3 2 1 Yes Methanococcus vannielii SB 8 4 Yes Methanothermus fervidus DSM 2088 2 1 Yes Methanothermobacter marburgensis str. Marburg 2 1 Yes Methanothermobacter thermautotrophicus str. Delta H 2 1 Yes Methanosphaera stadtmanae DSM 3091 2 1 Yes Methanobrevibacter sp. AbM4 2 1 Yes Methanobrevibacter ruminantium M1 4 2 Yes Methanobrevibacter smithii ATCC 35061 2 1 Yes Complete genome sequence of Methanobacterium sp. Mb1 2 1 Yes Aciduliprofundum sp. MAR08-339 4 2 Yes Aciduliprofundum boonei T469 4 2 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 221 136 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 76 45 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 44 26 Yes Ascaris suum Victoria/Ghent Pig roundworm 38 23 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 61 41 Yes Cryptococcus neoformans var. grubii H99 23 14 Yes Cryptococcus neoformans B-3501A 23 14 Yes Cryptococcus neoformans JEC21 26 15 Yes Paracoccidioides brasiliensis Pb01 20 12 Yes Paracoccidioides brasiliensis Pb03 23 13 Yes Coccidioides posadasii str. Silveira 23 13 Yes Coccidioides immitis RMSCC 3703 19 10 Yes Coccidioides immitis RMSCC 2394 23 13 Yes Coccidioides immitis H538.4 19 12 Yes Ajellomyces dermatitidis ER-3 24 14 Yes Histoplasma capsulatum H143 23 14 Yes Histoplasma capsulatum H88 24 15 Yes Histoplasma capsulatum G186AR 24 14 Yes Aspergillus fumigatus A1163 27 17 Yes Candida albicans WO-1 25 16 Yes Saccharomyces cerevisiae UC5 28 18 Yes Saccharomyces cerevisiae PW5 27 17 Yes Saccharomyces cerevisiae FL100 18 11 Yes Saccharomyces cerevisiae CLIB324 12 7 Yes Saccharomyces cerevisiae CBS7960 26 17 Yes Saccharomyces cerevisiae YJM269 25 16 Yes Saccharomyces cerevisiae T7 30 19 Yes Saccharomyces cerevisiae FostersB 27 17 Yes Saccharomyces cerevisiae FostersO 24 14 Yes Saccharomyces cerevisiae VL3 25 17 Yes Saccharomyces cerevisiae Vin13 27 19 Yes Saccharomyces cerevisiae LalvinQA23 26 17 Yes Saccharomyces cerevisiae AWRI796 25 15 Yes Saccharomyces cerevisiae Sigma1278b 30 19 Yes Saccharomyces cerevisiae W303 30 19 Yes Saccharomyces cerevisiae JAY291 30 19 Yes Saccharomyces cerevisiae AWRI1631 22 15 Yes Saccharomyces cerevisiae YPS163 17 11 Yes Saccharomyces cerevisiae M22 8 5 Yes Saccharomyces cerevisiae T73 16 10 Yes Saccharomyces cerevisiae CLIB215 22 13 Yes Saccharomyces cerevisiae Y10 7 5 Yes Saccharomyces cerevisiae YJM789 30 19 Yes Saccharomyces cerevisiae YJM789 30 19 Yes Saccharomyces cerevisiae RM11-1a 30 19 Yes Saccharomyces cerevisiae RM11-1a 30 19 Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 30 19 Yes Schizosaccharomyces pombe 972h- 25 14 Yes Batrachochytrium dendrobatidis JEL423 32 22 Yes Batrachochytrium dendrobatidis JAM81 37 22 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 84 51 Yes Hordeum vulgare 22 Domesticated barley 177 124 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 104 65 Yes Trypanosoma brucei Lister 427 v4.1 16 14 Yes Neospora caninum Nc-Liverpool 6.2 13 10 Yes Plasmodium falciparum HB3 12 9 Yes Plasmodium falciparum Dd2 9 7 Yes Desulfotomaculum gibsoniae DSM 7213 1 1 Yes Clostridium difficile BI1 1 1 Yes Clostridium difficile R20291 1 1 Yes Clostridium difficile CD196 1 1 Yes Halobacteroides halobius DSM 5150 1 1 Yes Exiguobacterium antarcticum B7 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum sequencing 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036 1 1 Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946 1 1 Yes Bacillus amyloliquefaciens LFB112 1 1 Yes Bacillus amyloliquefaciens CC178 1 1 Yes Bacillus amyloliquefaciens Y2 1 1 Yes Bacillus amyloliquefaciens IT-45 1 1 Yes Bacillus amyloliquefaciens XH7 1 1 Yes Bacillus amyloliquefaciens LL3 1 1 Yes Bacillus amyloliquefaciens TA208 1 1 Yes Bacillus amyloliquefaciens DSM 7 1 1 Yes Bacillus subtilis PY79 1 1 Yes Bacillus subtilis XF-1 1 1 Yes Bacillus subtilis QB928 1 1 Yes Bacillus subtilis BSn5 1 1 Yes Bacillus subtilis subsp. subtilis str. BAB-1 1 1 Yes Bacillus subtilis subsp. subtilis str. BSP1 1 1 Yes Bacillus subtilis subsp. subtilis str. RO-NN-1 1 1 Yes Bacillus subtilis subsp. subtilis 6051-HGW 1 1 Yes Bacillus subtilis subsp. spizizenii TU-B-10 1 1 Yes Bacillus subtilis subsp. spizizenii str. W23 1 1 Yes Bacillus subtilis subsp. natto BEST195 1 1 Yes Coxiella burnetii CbuK_Q154 1 1 Yes Coxiella burnetii CbuG_Q212 1 1 Yes Coxiella burnetii RSA 493 1 1 Yes Pseudomonas putida DOT-T1E 1 1 Yes Pseudomonas putida ND6 1 1 Yes Pseudomonas putida KT2440 1 1 Yes Pseudomonas aeruginosa SCV20265 1 1 Yes Candidatus Nitrososphaera gargensis Ga9.2 22 11 Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1 20 10 Yes Caldisphaera lagunensis DSM 15908 3 2 Yes Aeropyrum camini SY1 = JCM 12091 4 2 Yes Sulfolobus islandicus LAL14/1 4 2 Yes Sulfolobus islandicus REY15A 4 2 Yes Sulfolobus islandicus HVE10/4 4 2 Yes Sulfolobus islandicus Y.G.57.14 4 2 Yes Sulfolobus islandicus L.S.2.15 4 2 Yes Sulfolobus islandicus M.16.27 4 2 Yes Sulfolobus islandicus M.14.25 4 2 Yes Sulfolobus islandicus M.16.4 4 2 Yes Sulfolobus islandicus L.D.8.5 4 2 Yes Sulfolobus solfataricus 98/2 4 2 Yes Sulfolobus acidocaldarius SUSAZ 4 2 Yes Sulfolobus acidocaldarius Ron12/I 4 2 Yes Sulfolobus acidocaldarius N8 4 2 Yes Methanomethylovorans hollandica DSM 15978 2 1 Yes Methanolobus psychrophilus R15 2 1 Yes Methanosarcina mazei Tuc01 2 1 Yes Methanoregula formicica Methanoregula formicicum SMSP 2 1 Yes Archaeoglobus sulfaticallidus PM70-1 2 1 Yes Thermococcus sp. AM4 4 2 Yes Thermococcus sp. CL1 4 2 Yes Thermococcus litoralis DSM 5473 4 2 Yes Pyrococcus sp. NA2 2 1 Yes Pyrococcus furiosus DSM 3638 4 2 Yes Candidatus Methanomethylophilus alvus Mx1201 3 2 Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 2 1 Yes Ferroplasma acidarmanus fer1 4 2 Yes Halovivax ruber XH-70 11 6 Yes Natrinema pellirubrum DSM 15624 29 15 Yes Natronococcus occultus SP4 19 10 Yes Natronobacterium gregoryi SP2 17 9 Yes Haloquadratum walsbyi C23 17 9 Yes Halorhabdus tiamatea SARL4B 17 9 Yes Natronomonas moolapensis 8.8.11 17 9 Yes Haloarcula hispanica N601 17 9 Yes Methanococcus maripaludis X1 2 1 Yes Methanococcus maripaludis C6 2 1 Yes Methanococcus maripaludis C7 2 1 Yes Methanococcus maripaludis S2 2 1 Yes Methanobacterium sp. SWAN-1 2 1 Yes Homo sapiens 75_37 (old version GRC) Human 263 175 Yes Homo sapiens Human 113 67 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 67 40 Yes Heliconius numata 18 12 Yes Loa loa v3.3 (Request) Eye worm 35 22 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 33 23 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 29 18 Yes Moniliophthora perniciosa FA553 11 9 Yes Encephalitozoon intestinalis 12 8 Yes Encephalitozoon cuniculi (endoparasite) 13 9 Yes Picea sitchensis Sitka spruce 3 2 Yes Lotus japonicus 92 59 Yes Malus x domestica (Duplicate) Apple 202 130 Yes Ricinus communis Castor bean 78 48 Yes Nicotiana benthamiana 0.4.4 (Early draft) 186 107 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 102 59 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 109 63 Yes Phoenix dactylifera Date palm 63 37 Yes Guillardia theta (nucleomorph) 6 3 Yes Homo sapiens 69_37 Human 74 44 Yes Pan troglodytes 69_2.1.4 Chimpanzee 70 42 Yes Gorilla gorilla 69_3.1 Western gorilla 78 47 Yes Pongo abelii 69_2 Sumatran orangutan 73 44 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 69 41 Yes Macaca mulatta 69_1 Rhesus monkey 71 46 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 79 47 Yes Otolemur garnettii 69_3 Small-eared galago 78 44 Yes Microcebus murinus 69_1 Gray mouse lemur 61 40 Yes Rattus norvegicus 69_3.4 Norway rat 69 40 Yes Mus musculus 69_38 House mouse 66 39 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 55 34 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 68 42 Yes Cavia porcellus 69_3 Domestic guinea pig 76 47 Yes Oryctolagus cuniculus 69_2 Rabbit 76 48 Yes Ochotona princeps 69 American pika 58 34 Yes Tupaia belangeri 69 Northern tree shrew 60 38 Yes Sus scrofa 69_10.2 Pig 68 44 Yes Bos taurus 69_3.1 Cattle 72 42 Yes Vicugna pacos 69_1 Alpaca 43 24 Yes Tursiops truncatus 69_1 Bottlenose dolphin 64 37 Yes Mustela putorius furo 69_1.0 Domestic ferret 68 38 Yes Ailuropoda melanoleuca 69_1 Giant panda 68 40 Yes Canis familiaris 69_3.1 Dog 77 44 Yes Felis catus 69 Domestic cat 52 34 Yes Equus caballus 69_2 Horse 63 37 Yes Myotis lucifugus 69_2.0 Little brown bat 86 54 Yes Pteropus vampyrus 69_1 Large flying fox 64 40 Yes Sorex araneus 69_1 European shrew 55 37 Yes Erinaceus europaeus 69 Western European hedgehog 49 30 Yes Procavia capensis 69_1 Cape rock hyrax 63 39 Yes Loxodonta africana 69_3 African savanna elephant 68 41 Yes Echinops telfairi 69 Small Madagascar hedgehog 53 33 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 56 34 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 51 31 Yes Macropus eugenii 69_1.0 Tammar wallaby 51 30 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 73 41 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 76 44 Yes Ornithorhynchus anatinus 69_5 Platypus 63 37 Yes Petromyzon marinus 69_7.0 Sea lamprey 33 20 Yes Meleagris gallopavo 69_2 Turkey 56 36 Yes Gallus gallus 69_2 Chicken 58 34 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 62 37 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 58 34 Yes Anolis carolinensis 69_2.0 Green anole 61 37 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 91 56 Yes Latimeria chalumnae 69_1 Coelacanth 74 43 Yes Gadus morhua 69_1 Atlantic cod 80 46 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 85 53 Yes Takifugu rubripes 69_4 Torafugu 98 58 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 83 52 Yes Oryzias latipes 69_1 Japanese medaka 75 49 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 81 53 Yes Oreochromis niloticus 69_1.0 Nile tilapia 90 55 Yes Danio rerio 69_9 Zebrafish 82 49 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 28 17 Yes Ciona intestinalis 69 Vase tunicate 32 18 Yes Drosophila melanogaster 69_5 Fruit fly 37 21 Yes Caenorhabditis elegans 69_215 Roundworm 45 29 Yes Saccharomyces cerevisiae 69_4 Baker's yeast 30 19 Yes Arabidopsis thaliana 10 Thale cress 105 62 Yes 1_050719N (meta-genome) 18 12 Yes 1_Upper_euphotic (meta-genome) 1 1 Yes 2_050719S (meta-genome) 40 28 Yes 2_Base_of_chrolophyll_max (meta-genome) 6 3 Yes 3_050719R (meta-genome) 2 1 Yes 3_Below_base_of_euphotic (meta-genome) 2 2 Yes 4_050719Q (meta-genome) 2 1 Yes 4_Deep_abyss (meta-genome) 2 1 Yes 5_Below_upper_mesopelagic (meta-genome) 3 2 Yes 7_Oxygen_minimum_layer (meta-genome) 4 2 Yes Air microbial communities Singapore indoor air filters 2 (meta-genome) 2 2 Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome) 3 2 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 4 3 Yes Bath Hot Springs, filamentous community (meta-genome) 21 14 Yes Bath Hot Springs, planktonic community (meta-genome) 53 39 Yes Core Eukaryotic Genes 458 (CEGMA) 12 6 Yes Crater Hills (meta-genome) 3 2 Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 Yes Dump bottom (Dump bottom) (meta-genome) 1 1 Yes Dump top (Dump top) (meta-genome) 1 1 Yes Endophytic microbiome from Rice (meta-genome) 2 2 Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 3 3 Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 1 1 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 1 1 Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 1 1 Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 1 1 Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome) 12 9 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 45 29 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome) 17 10 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 20 16 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome) 2 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome) 17 14 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome) 25 20 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 7 6 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 2 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 4 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 54 36 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome) 36 27 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome) 5 3 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome) 14 11 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome) 48 37 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome) 35 27 Yes Human Gut Community Subject 7 (meta-genome) 2 1 Yes Human Gut Community Subject 8 (meta-genome) 2 1 Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 2 2 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 6 6 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 4 4 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 1 1 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 1 1 Yes NCBI 2017_08 genome 64761 39145 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 22 16 Yes Protozoadb 2010_08 (Protozoadb) 617 449 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 2 2 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 2 1 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 3 3 Yes Soil microbial communities from Minnesota Farm (meta-genome) 2 2 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 4 4 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 9 8 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 6 4 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 2 2 Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 2 1 Yes STRING v9.0.5 (STRING) 5676 3487 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 3 3 Yes Uniprot 2018_03 genome 74787 45966 Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 10 6 Yes Global Ocean Sampling Expedition (GOS) 940 630 Yes NCBI plasmid sequences (Plasmids) 68 36 Yes NCBI viral sequences (Viral) 75 50 Yes PDB chains (SCOP 1.75 ) (PDB) 69 37 Yes Protein Data Bank (all PDB sequenc) 764 396 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 1913 1888 Yes TargetDB 262 171 Yes UniProt 57 33
