SUPERFAMILY 1.75 HMM library and genome assignments server

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Cellulases catalytic domain family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   36000 36000
No Yes Saccoglossus kowalevskii v3.0   60 56
No Yes Oikopleura dioica   22 19
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 24 22
No Yes Ciona intestinalis 76 Vase tunicate 8 8
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   8 8
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 7 6
No Yes Lottia gigantea Owl limpet 13 13
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 3 3
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 5 4
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Daphnia pulex Common water flea 4 4
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Mortierella verticillata NRRL 6337   3 3
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   4 4
No Yes Mucor circinelloides   6 6
No Yes Rhizomucor miehei CAU432   3 3
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   8 8
No Yes Dictyostelium purpureum   8 8
No Yes Selaginella moellendorffii   24 24
No Yes Pinus taeda Loblolly pine 55 52
No Yes Picea abies Norway spruce 29 29
No Yes Eucalyptus grandis v201 Rose gum 27 27
No Yes Theobroma cacao B97-61/B2 v1 Cacao 19 18
No Yes Gossypium raimondii v221   52 52
No Yes Citrus clementina v165   25 25
No Yes Citrus sinensis v154 Sweet orange 31 31
No Yes Thellungiella halophila v173   24 24
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 40 40
No Yes Capsella rubella v183   23 23
No Yes Arabidopsis lyrata Lyrate rockcress 25 25
No Yes Arabidopsis thaliana 10 Thale cress 26 26
No Yes Carica papaya Papaya 19 19
No Yes Medicago truncatula Barrel medic 30 30
No Yes Phaseolus vulgaris v186 French bean 25 25
No Yes Glycine max v109 Soybean 41 41
No Yes Cucumis sativus v122 Cucumber 20 20
No Yes Fragaria vesca Wild strawberry 24 24
No Yes Malus domestica v196 Apple 28 28
No Yes Prunus persica v139 Peach 19 19
No Yes Linum usitatissimum v200 Flax 42 42
No Yes Manihot esculenta v147 Cassava 26 26
No Yes Populus trichocarpa v156 Black cottonwood 30 30
No Yes Vitis vinifera Wine grape 21 20
No Yes Mimulus guttatus v140 Spotted monkey flower 27 27
No Yes Solanum lycopersicum v.2.3 Tomato 20 20
No Yes Solanum tuberosum Potato 27 27
No Yes Actinidia chinensis Hongyang   23 22
No Yes Aquilegia coerulea v195   34 34
No Yes Triticum urartu 22   21 21
No Yes Triticum aestivum 22 Bread wheat 49 49
No Yes Aegilops tauschii 22   26 25
No Yes Brachypodium distachyon Stiff brome 22 22
No Yes Oryza barthii 22 African wild rice 25 24
No Yes Oryza meridionalis 22   24 24
No Yes Oryza glumaepatula 22   27 27
No Yes Oryza glaberrima African rice 22 22
No Yes Oryza punctata 22   26 26
No Yes Oryza nivara 22   31 31
No Yes Oryza brachyantha 22 Malo sina 24 24
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 27 27
No Yes Oryza sativa v193 Rice 27 27
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 23 23
No Yes Panicum virgatum v202 Switchgrass 51 51
No Yes Setaria italica v164 Foxtail millet 25 25
No Yes Zea mays subsp. mays Maize 27 27
No Yes Zea mays v181 Maize 32 32
No Yes Sorghum bicolor Sorghum 23 23
No Yes Musa balbisiana Balbis banana 33 31
No Yes Musa acuminata 22 Wild Malaysian banana 33 33
No Yes Amborella trichopoda 22   23 23
No Yes Physcomitrella patens   19 19
No Yes Coccomyxa subellipsoidea sp. C-169 v2   11 11
No Yes Asterochloris sp. Cgr/DA1pho v1.0   7 7
No Yes Chlorella variabilis sp. NC64A   4 4
No Yes Chlorella vulgaris   11 11
No Yes Volvox carteri f. nagariensis   3 3
No Yes Volvox carteri v199   3 3
No Yes Chlamydomonas reinhardtii 4.0   3 3
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Acidothermus cellulolyticus 11B   3 3
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Kineococcus radiotolerans SRS30216   1 1
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Thermobifida fusca YX   3 3
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   2 2
No Yes Streptosporangium roseum DSM 43021   4 4
No Yes Kitasatospora setae KM-6054   4 4
No Yes Streptomyces coelicolor A3(2)   3 3
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces bingchenggensis BCW-1   4 4
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces scabiei 87.22   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Actinosynnema mirum DSM 43827   2 2
No Yes Amycolatopsis mediterranei U32   5 5
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   3 3
No Yes Micromonospora sp. L5   3 3
No Yes Micromonospora aurantiaca ATCC 27029   3 3
No Yes Actinoplanes sp. N902-109   3 3
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Actinoplanes missouriensis 431   3 3
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   6 6
No Yes Cellulomonas fimi ATCC 484   6 6
No Yes [Cellvibrio] gilvus ATCC 13127   3 3
No Yes Bifidobacterium longum subsp. longum JDM301   1 1
No Yes Bifidobacterium adolescentis ATCC 15703   1 1
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Herpetosiphon aurantiacus DSM 785   7 7
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Megamonas hypermegale   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Clostridium clariflavum DSM 19732   16 15
No Yes Clostridium cellulolyticum H10   17 17
No Yes Clostridium thermocellum ATCC 27405   19 19
No Yes Ethanoligenens harbinense YUAN-3   1 1
No Yes Ruminococcus albus 7   10 10
No Yes Desulfosporosinus acidiphilus SJ4   1 1
No Yes Clostridium phytofermentans ISDg   3 3
No Yes Clostridium lentocellum DSM 5427   8 8
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Coprococcus sp. ART55/1   2 2
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   3 3
No Yes Butyrivibrio fibrisolvens   3 3
No Yes Clostridium sp. BNL1100   18 18
No Yes Clostridium cellulovorans 743B   14 14
No Yes Clostridium acetobutylicum ATCC 824   5 5
No Yes Mahella australiensis 50-1 BON   4 4
No Yes Caldicellulosiruptor obsidiansis OB47   4 3
No Yes Caldicellulosiruptor kronotskyensis 2002   5 4
No Yes Caldicellulosiruptor lactoaceticus 6A   3 3
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   3 2
No Yes Caldicellulosiruptor bescii DSM 6725   5 4
No Yes Lactobacillus crispatus ST1   2 2
No Yes Lactobacillus amylovorus GRL1118   1 1
No Yes Lactobacillus reuteri DSM 20016   1 1
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Lactobacillus acidophilus 30SC   1 1
No Yes Lactococcus lactis subsp. cremoris MG1363   1 1
No Yes Streptococcus sp. I-P16   1 1
No Yes Streptococcus sp. I-G2   1 1
No Yes Streptococcus parasanguinis ATCC 15912   1 1
No Yes Streptococcus mutans NN2025   1 1
No Yes Streptococcus sanguinis SK36   1 1
No Yes Streptococcus salivarius 57.I   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   4 4
No Yes Paenibacillus polymyxa M1   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Bacillus pumilus SAFR-032   2 2
No Yes Melioribacter roseus P3M   2 2
No Yes Ignavibacterium album JCM 16511   2 2
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Fibrella aestuarina   2 2
No Yes Dyadobacter fermentans DSM 18053   2 2
No Yes Cytophaga hutchinsonii ATCC 33406   9 9
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   1 1
No Yes Paludibacter propionicigenes WB4   2 2
No Yes Prevotella ruminicola 23   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Fibrobacter succinogenes subsp. succinogenes S85   11 11
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Opitutus terrae PB90-1   4 4
No Yes Spirochaeta caldaria DSM 7334   2 2
No Yes Treponema succinifaciens DSM 2489   1 1
No Yes Spirochaeta thermophila DSM 6192   3 3
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Sorangium cellulosum 'So ce 56'   5 5
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Ramlibacter tataouinensis TTB310   3 3
No Yes Methylovorus sp. MP688   1 1
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Asticcacaulis excentricus CB 48   2 2
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Saccharophagus degradans 2-40   3 3
No Yes Teredinibacter turnerae T7901   5 5
No Yes Cellvibrio japonicus Ueda107   3 3
No Yes Vibrio anguillarum 775   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Pseudoalteromonas atlantica T6c   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   4 4
No Yes Marinomonas sp. MWYL1   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Dickeya dadantii Ech703   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   2 2
No Yes Klebsiella pneumoniae NTUH-K2044   2 2
No Yes Enterobacter sp. R4-368   2 2
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Halorhabdus utahensis DSM 12940   1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 19 18
No Yes Hordeum vulgare 22 Domesticated barley 31 31
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 28 28
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Stanieria cyanosphaera PCC 7437   2 2
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   4 4
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Amycolatopsis mediterranei RB   5 5
No Yes Amycolatopsis mediterranei S699   5 5
No Yes Amycolatopsis mediterranei S699   5 5
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   2 2
No Yes Clostridium thermocellum DSM 1313   19 19
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   2 2
No Yes Ruminococcus champanellensis 18P13   9 9
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   6 6
No Yes Clostridium acetobutylicum DSM 1731   5 5
No Yes Clostridium acetobutylicum EA 2018   5 5
No Yes Lactobacillus johnsonii N6.2   1 1
No Yes Lactobacillus johnsonii DPC 6026   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus amylovorus GRL 1112   1 1
No Yes Lactobacillus reuteri TD1   1 1
No Yes Lactobacillus reuteri I5007   1 1
No Yes Lactobacillus reuteri JCM 1112   1 1
No Yes Lactobacillus helveticus R0052   1 1
No Yes Lactobacillus brevis KB290   1 1
No Yes Lactobacillus acidophilus La-14   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   1 1
No Yes Lactococcus lactis subsp. lactis IO-1   2 2
No Yes Lactococcus lactis subsp. lactis KF147   2 2
No Yes Lactococcus lactis subsp. cremoris KW2   1 1
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Lactococcus lactis subsp. cremoris NZ9000   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   1 1
No Yes Streptococcus anginosus C238   1 1
No Yes Streptococcus anginosus C1051   1 1
No Yes Streptococcus parasanguinis FW213   1 1
No Yes Streptococcus mutans GS-5   1 1
No Yes Streptococcus mutans LJ23   1 1
No Yes Streptococcus salivarius CCHSS3   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Thermobacillus composti KWC4   2 2
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Paenibacillus mucilaginosus KNP414   5 5
No Yes Paenibacillus mucilaginosus K02   5 5
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Amphibacillus xylanus NBRC 15112   2 2
No Yes Bacillus licheniformis 9945A   3 3
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus E33L   2 2
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Fibrobacter succinogenes subsp. succinogenes S85   11 11
No Yes Spirochaeta thermophila DSM 6578   3 3
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Sorangium cellulosum So0157-2   5 5
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   2 2
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Dickeya dadantii 3937   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   2 2
No Yes Klebsiella pneumoniae CG43   2 2
No Yes Klebsiella pneumoniae KCTC 2242   2 2
No Yes Klebsiella pneumoniae 342   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   2 2
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   2 2
No Yes Escherichia coli LY180   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   17 17
No Yes Malus x domestica (Duplicate) Apple 28 28
No Yes Ricinus communis (Early assembly) Castor bean 19 19
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   34 33
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 20 20
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 20 20
No Yes Phoenix dactylifera (Early draft) Date palm 18 17
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 10 8
No Yes Ciona intestinalis 69 Vase tunicate 8 8
No Yes Arabidopsis thaliana 10 Thale cress 25 25
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   10 10
No Yes Dump top (Dump top) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   29 29
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   3 3
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   19256 19220
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   13 13
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   14 14
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   6 6
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   26 26
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   11 11
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   13 13
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   500 494
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   4 4
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   11444 11386
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   17 17
No Yes NCBI plasmid sequences (Plasmids)   13 13
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   22 22
No Yes Protein Data Bank (all PDB sequenc)   96 96
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   351 351
No Yes TargetDB (Targets)   6 6

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