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Leucine-rich repeat variant family domain assignments
in
all bacterial genomes

Assignment details

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25 selected genomes have 27 significant domains in 27 proteins.

Showing genomes 1 to 25 of 51
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Methylacidiphilum infernorum V4 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|189218472|ref|YP_001939113.1|   1.64e-34   0.0000327   17-223   1lrv A:  

Leptospirillum ferrooxidans C2-3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383785638|ref|YP_005470208.1|   6.91e-35   0.0000338   33-233   1lrv A:  

Acidithiobacillus ferrivorans SS3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|344199793|ref|YP_004784119.1|   7.09e-42   0.0000607   27-220   1lrv A:  
  0.0193   0.055   222-245   1lrv A:  
 
Weak hits:
gi|344200062|ref|YP_004784388.1|   0.00000000461   0.02   42-173,206-230   1lrv A:  
gi|344200901|ref|YP_004785227.1|   0.00000127   0.016   42-123   1lrv A:  

Acidithiobacillus ferrooxidans ATCC 53993 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|198283374|ref|YP_002219695.1|   1.89e-41   0.0000596   29-220   1lrv A:  

Dechloromonas aromatica RCB has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|71907040|ref|YP_284627.1|   4.43e-44   0.00000175   18-223   1lrv A:  

Azoarcus sp. KH32C has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|470172433|ref|YP_007553319.1|   5.82e-46   0.0000141   21-229   1lrv A:  
 
Weak hits:
gi|470204056|ref|YP_007598155.1|   0.0000000806   0.0076   328-460   1lrv A:  
  0.000000201   0.027   225-351   1lrv A:  

Azoarcus sp. BH72 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|119896855|ref|YP_932068.1|   1.32e-41   0.00000338   56-262   1lrv A:  

Rubrivivax gelatinosus IL144 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383760120|ref|YP_005439106.1|   7.79e-46   0.0000383   20-224   1lrv A:  

Leptothrix cholodnii SP-6 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|171058092|ref|YP_001790441.1|   6.91e-45   0.000027   20-224   1lrv A:  

Burkholderia xenovorans LB400 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|91778657|ref|YP_553865.1|   6.91e-48   0.0000221   27-248   1lrv A:  

Burkholderia vietnamiensis G4 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|134291409|ref|YP_001115178.1|   2.08e-44   0.0000325   27-248   1lrv A:  

Polaromonas naphthalenivorans CJ2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|121604484|ref|YP_981813.1|   1.82e-45   0.0000427   40-243   1lrv A:  
 
Weak hits:
gi|121583219|ref|YP_973655.1|   1.02e-41   0.047   46-239   1lrv A:  

Herbaspirillum seropedicae SmR1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|300312175|ref|YP_003776267.1|   8.64e-48   0.0000145   27-237   1lrv A:  

Sideroxydans lithotrophicus ES-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|291613369|ref|YP_003523526.1|   4.87e-41   0.00000175   19-223   1lrv A:  

Rhodospirillum photometricum DSM 122 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|384260723|ref|YP_005415909.1|   3.74e-45   0.0000697   18-243   1lrv A:  
 
Weak hits:
gi|384260972|ref|YP_005416158.1|   1.24e-21   0.066   59-221   1lrv A:  
gi|384262078|ref|YP_005417264.1|   0.0000000538   0.028   74-190   1lrv A:  

Rhodospirillum rubrum F11 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386349046|ref|YP_006047294.1|   1.28e-43   0.0000859   32-246   1lrv A:  

Azospirillum lipoferum 4B has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|374292709|ref|YP_005039744.1|   9.9e-37   0.0000326   43-250   1lrv A:  
 
Weak hits:
gi|374291969|ref|YP_005039004.1|   0.000000326   0.056   40-159   1lrv A:  

Azospirillum sp. B510 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|288959091|ref|YP_003449432.1|   1.28e-36   0.0000228   42-234   1lrv A:  
 
Weak hits:
gi|288959414|ref|YP_003449755.1|   0.0000215   0.063   77-168   1lrv A:  

Azospirillum brasilense Sp245 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|392381768|ref|YP_005030965.1|   9.79e-44   0.0000404   14-237   1lrv A:  
 
Weak hits:
gi|392381285|ref|YP_005030482.1|   0.000000249   0.058   13-137   1lrv A:  
gi|392384526|ref|YP_005033722.1|   1.92e-21   0.087   25-181   1lrv A:  

Gluconacetobacter diazotrophicus PAl 5 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|162146257|ref|YP_001600716.1|   5.76e-44   0.000021   22-248   1lrv A:  

Xanthobacter autotrophicus Py2 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|154244073|ref|YP_001415031.1|   1.19e-51   0.0000244   16-242   1lrv A:  
gi|154244096|ref|YP_001415054.1|   3.74e-45   0.0000243   21-246   1lrv A:  
 
Weak hits:
gi|154244869|ref|YP_001415827.1|   6.12e-17   0.0071   178-347   1lrv A:  
  0.0000489   0.054   373-447   1lrv A:  

Azorhizobium caulinodans ORS 571 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|158422672|ref|YP_001523964.1|   1.21e-42   0.000032   55-281   1lrv A:  
gi|158425042|ref|YP_001526334.1|   1.81e-46   0.0000267   14-239   1lrv A:  

Methylobacterium sp. 4-46 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|170741760|ref|YP_001770415.1|   3.17e-46   0.0000365   17-242   1lrv A:  

Methylocella silvestris BL2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|217979742|ref|YP_002363889.1|   4.11e-43   0.0000421   24-220   1lrv A:  

Beijerinckia indica subsp. indica ATCC 9039 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|182677396|ref|YP_001831542.1|   8.64e-48   0.000027   14-240   1lrv A:  
 
Weak hits:
gi|182677391|ref|YP_001831537.1|   2.71e-41   0.00011   15-240   1lrv A:  

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Showing genomes 1 to 25 of 51

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Select to display   Genome       Domains   Proteins
No Yes ALL   857 857
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Dechloromonas aromatica RCB   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Azoarcus sp. BH72   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Xanthobacter autotrophicus Py2   2 2
No Yes Azorhizobium caulinodans ORS 571   2 2
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   2 2
No Yes Teredinibacter turnerae T7901   1 1
No Yes Methylomonas methanica MC09   2 2
No Yes Methylococcus capsulatus str. Bath   2 2
No Yes Thiocystis violascens DSM 198   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   415 415
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   30 30
No Yes Uniprot 2018_03 genome   293 292
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   3 3

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