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Serum albumin-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 31 significant domains in 11 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1j78A   2.46e-66   0.0000000794   9-191   1kxp D:17-214  
  4.61e-56   0.0000000884   202-380   1j78 A:199-386  
  5.86e-24   0.0000642   388-448   1j78 A:387-457  
1kxpD   2.46e-66   0.0000000794   9-191   1kxp D:17-214  
  4.61e-56   0.0000000884   202-380   1j78 A:199-386  
  1.03e-23   0.0000642   388-448   1j78 A:387-457  
1ma9A   2.46e-66   0.0000000794   9-191   1kxp D:17-214  
  4.61e-56   0.0000000884   202-380   1j78 A:199-386  
  8.06e-24   0.0000715   388-448   1j78 A:387-457  
 
Weak hits:
1bkeA   5.27e-77   0.00056   197-375   1bm0 A:197-388  
  5.96e-74   0.00067   386-573   1bm0 A:389-582  
  1.08e-69   0.00029   3-183   1bm0 A:5-196  
1hk3A   5.39e-75   0.00066   200-378   1bm0 A:197-388  
  6.09e-74   0.00067   389-576   1bm0 A:389-582  
  1.08e-69   0.0003   6-186   1bm0 A:5-196  
1hk5A   3.9e-76   0.00066   200-378   1bm0 A:197-388  
  6.09e-74   0.00067   389-576   1bm0 A:389-582  
  1.08e-69   0.0003   6-186   1bm0 A:5-196  
1n5uA   5.33e-77   0.00056   200-378   1bm0 A:197-388  
  6.09e-74   0.00067   389-576   1bm0 A:389-582  
  1.08e-69   0.0003   6-186   1bm0 A:5-196  
1tf0A   5.1e-77   0.00056   200-378   1bm0 A:197-388  
  1e-72   0.00082   389-572   1bm0 A:389-582  
  1.02e-69   0.0003   6-186   1bm0 A:5-196  
1ysxA   3.12e-75   0.00067   5-192   1bm0 A:389-582  
2bxkA   5.33e-77   0.00056   200-378   1bm0 A:197-388  
  3.12e-73   0.00072   389-576   1bm0 A:389-582  
  1.08e-69   0.0003   6-186   1bm0 A:5-196  
2vdbA   5.27e-77   0.00056   195-373   1bm0 A:197-388  
  5.96e-74   0.00067   384-571   1bm0 A:389-582  
  1.08e-69   0.00029   1-181   1bm0 A:5-196  

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Select to display   Genome       Domains   Proteins
No Yes ALL   8610 8610
No Yes Homo sapiens 76_38 Human 43 17
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 12 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 18 6
No Yes Pongo abelii 76_2 Sumatran orangutan 11 4
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 12 4
No Yes Papio anubis 76 Olive baboon 10 4
No Yes Macaca mulatta 76_1 Rhesus monkey 35 14
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 15 5
No Yes Otolemur garnettii 76_3 Small-eared galago 9 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 9 4
No Yes Rattus norvegicus 76_5.0 Norway rat 14 5
No Yes Mus musculus 76_38 House mouse 17 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 13 5
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 9 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 9 3
No Yes Cavia porcellus 76_3 Domestic guinea pig 15 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 12 5
No Yes Ochotona princeps 76 American pika 11 4
No Yes Tupaia belangeri 76 Northern tree shrew 8 5
No Yes Sus scrofa 76_10.2 Pig 15 6
No Yes Bos taurus 76_3.1 Cattle 12 4
No Yes Ovis aries 76_3.1 Sheep 19 7
No Yes Vicugna pacos 76_1 Alpaca 10 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 4
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 12 4
No Yes Canis familiaris 76_3.1 Dog 18 6
No Yes Felis catus 76_6.2 Domestic cat 9 3
No Yes Equus caballus 76_2 Horse 13 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 16 6
No Yes Pteropus vampyrus 76_1 Large flying fox 11 4
No Yes Sorex araneus 76_1 European shrew 6 3
No Yes Erinaceus europaeus 76 Western European hedgehog 8 3
No Yes Procavia capensis 76_1 Cape rock hyrax 10 4
No Yes Loxodonta africana 76_3 African savanna elephant 17 7
No Yes Echinops telfairi 76 Small Madagascar hedgehog 12 4
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 15 6
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 6 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 13 5
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 13 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 7 3
No Yes Meleagris gallopavo 76_2 Turkey 8 3
No Yes Gallus gallus 76_4 Chicken 8 3
No Yes Anas platyrhynchos 76_1.0 Mallard 8 3
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 3 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 3
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 4
No Yes Anolis carolinensis 76_2.0 Green anole 8 3
No Yes Xenopus laevis African clawed frog 37 13
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 7 3
No Yes Latimeria chalumnae 76_1 Coelacanth 5 2
No Yes Lepisosteus oculatus 76 Spotted gar 3 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 13 5
No Yes Homo sapiens 75_37 (old version GRC) Human 39 15
No Yes Homo sapiens (NCBI version) Human 18 6
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 14 5
No Yes Homo sapiens 69_37 Human 12 4
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 12 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 15 5
No Yes Pongo abelii 69_2 Sumatran orangutan 11 4
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 12 4
No Yes Macaca mulatta 69_1 Rhesus monkey 10 4
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 12 4
No Yes Otolemur garnettii 69_3 Small-eared galago 9 3
No Yes Microcebus murinus 69_1 Gray mouse lemur 9 4
No Yes Rattus norvegicus 69_3.4 Norway rat 14 6
No Yes Mus musculus 69_38 House mouse 15 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 13 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 9 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 12 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 16 6
No Yes Ochotona princeps 69 American pika 11 4
No Yes Tupaia belangeri 69 Northern tree shrew 8 5
No Yes Sus scrofa 69_10.2 Pig 15 6
No Yes Bos taurus 69_3.1 Cattle 12 4
No Yes Vicugna pacos 69_1 Alpaca 10 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 4
No Yes Mustela putorius furo 69_1.0 Domestic ferret 15 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 12 4
No Yes Canis familiaris 69_3.1 Dog 12 4
No Yes Felis catus 69 Domestic cat 8 3
No Yes Equus caballus 69_2 Horse 13 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 16 6
No Yes Pteropus vampyrus 69_1 Large flying fox 11 4
No Yes Sorex araneus 69_1 European shrew 6 3
No Yes Erinaceus europaeus 69 Western European hedgehog 8 3
No Yes Procavia capensis 69_1 Cape rock hyrax 10 4
No Yes Loxodonta africana 69_3 African savanna elephant 13 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 12 4
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 6 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 11 4
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 13 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 7 3
No Yes Meleagris gallopavo 69_2 Turkey 8 3
No Yes Gallus gallus 69_2 Chicken 11 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 3 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 7 3
No Yes Anolis carolinensis 69_2.0 Green anole 7 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 5 2
No Yes Latimeria chalumnae 69_1 Coelacanth 5 2
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes NCBI 2017_08 genome   2613 972
No Yes STRING v9.0.5 (STRING)   194 73
No Yes Uniprot 2018_03 genome   1946 722
No Yes PDB chains (SCOP 1.75) (PDB)   31 11
No Yes Protein Data Bank (all PDB sequenc)   27 9
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1980 1980
No Yes TargetDB (Targets)   3 1

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