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Cytochrome c3-like family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 27 significant domains in 27 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
19hcA   2.56e-122   0.000000000052   2-290   19hc A:  
1aqeA   2.34e-25   0.00000633   10-109   1aqe A:  
1czjA   3.98e-26   0.00000672   10-109   1aqe A:  
1duwA   1.29e-122   0.0000000000386   5-291   1duw A:  
1gyoA   1.07e-19   0.00000752   5-105   1gyo A:  
1h29A   3.71e-201   0.00000000000000305   8-511   1h29 A:  
1hh5A   0.0000000000000293   0.0000539   4-66   1f22 A:  
1i77A   6.42e-31   0.0000244   7-107   1i77 A:  
1kwjA   0.0000000000000357   0.0000667   4-66   1f22 A:  
1ofwA   6.35e-123   0.0000000000488   2-290   1ofw A:  
1os6A   2.36e-17   0.0000471   5-70   1os6 A:  
1qn0A   1.34e-41   0.0000429   1-111   1wad A:  
1up9A   2.26e-31   0.0000299   7-107   1up9 A:  
1w7oA   7.85e-23   0.0000125   18-115   2cy3 A:  
1wadA   3.69e-41   0.0000387   1-111   1wad A:  
2cvcA   4.62e-201   0.00000000000000305   39-542   1h29 A:  
2cy3A   4.91e-23   0.0000076   18-115   2cy3 A:  
3caoA   6.31e-22   0.00000404   6-100   3cao A:  
3carA   6.31e-22   0.00000404   6-100   3cao A:  
3cyrA   3.89e-31   0.0000299   7-107   1up9 A:  
 
Weak hits:
1j0oA   1.56e-31   0.00029   4-106   1j0p A:  
1j0pA   3.65e-31   0.00029   5-107   1j0p A:  
1mdvA   4.48e-31   0.00029   4-106   2cth A:  
1rwjA   5.47e-23   0.00039   5-80   1rwj A:  
1wr5A   3.55e-31   0.00029   5-107   1j0p A:  
2cdvA   1.74e-31   0.00036   4-106   1j0p A:  
2cthA   4.75e-32   0.00029   4-106   2cth A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   825 825
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Thermodesulfovibrio yellowstonii DSM 11347   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Desulfococcus oleovorans Hxd3   2 2
No Yes Desulfohalobium retbaense DSM 5692   1 1
No Yes Desulfomicrobium baculatum DSM 4028   3 3
No Yes Desulfovibrio piezophilus   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio alaskensis G20   2 2
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   2 2
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   2 2
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter sulfurreducens KN400   2 2
No Yes Geobacter metallireducens GS-15   2 2
No Yes Desulfobacula toluolica Tol2   1 1
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Desulfovibrio vulgaris RCH1   2 2
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   2 2
No Yes Desulfovibrio vulgaris str. Hildenborough   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   3 3
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Geobacter sp. M18   1 1
No Yes Geobacter sulfurreducens PCA   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   164 164
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   4 4
No Yes STRING v9.0.5 (STRING)   23 23
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   166 166
No Yes PDB chains (SCOP 1.75) (PDB)   27 27
No Yes Protein Data Bank (all PDB sequenc)   62 62
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   305 305

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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