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C2 set domains family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 29 significant domains in 27 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1cczA   1.36e-27   0.0000113   94-171   1ccz A:94-171  
1cdhA   0.000000018   0.0000288   102-177   2nxy B:1098-1181  
1cdiA   0.0000000182   0.0000288   103-178   2nxy B:1098-1181  
1cduA   0.0000000181   0.0000288   102-177   2nxy B:1098-1181  
1cdyA   0.000000018   0.0000288   102-177   2nxy B:1098-1181  
1cidA   7.22e-26   0.0000413   105-177   1cid A:106-177  
1d3lA   2.27e-23   0.0000027   82-176   1ic1 A:83-190  
1dr9A   0.0000000000956   0.0000105   74-198   1dr9 A:106-200  
1g9mC   0.0000000146   0.000027   102-178   2nxy B:1098-1181  
1hnfA   4.47e-28   0.0000148   105-182   1hnf A:105-182  
1hngA   1.28e-27   0.0000113   99-176   1ccz A:94-171  
1i8lA   0.000000000105   0.0000105   74-198   1dr9 A:106-200  
1iamA   9.85e-23   0.00000356   82-176   1ic1 A:83-190  
1ic1A   2.48e-23   0.00000186   82-176   1ic1 A:83-190  
1ij9A   1.3e-23   0.00000283   88-187   1vca A:91-199  
1mq8A   6.9e-23   0.00000186   82-176   1ic1 A:83-190  
1p53A   0.000000000516   0.0000131   99-181   1p53 A:283-366  
1vcaA   1.41e-23   0.00000228   88-187   1vca A:91-199  
1vscA   1.3e-23   0.00000313   88-187   1vca A:91-199  
1wioA   7.04e-27   0.000024   290-361   1wio A:292-363  
  0.0000000442   0.000027   102-178   2nxy B:1098-1181  
1z7zI   1.4e-22   0.00000186   82-176   1ic1 A:83-190  
  0.00000000143   0.0000131   283-365   1p53 A:283-366  
1zxqA   2.04e-18   0.00000259   84-182   1zxq A:87-192  
2d9qB   1.12e-30   0.00000388   2-95   2d9q B:3-96  
2nxyB   0.0000000144   0.000027   103-179   2nxy B:1098-1181  
2oz4A   0.000000000524   0.0000131   98-180   1p53 A:283-366  
2qadB   0.0000000137   0.000027   102-178   2nxy B:1098-1181  
3cd4A   0.0000000139   0.000027   102-178   2nxy B:1098-1181  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3553 3553
No Yes Homo sapiens 76_38 Human 34 29
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 11 8
No Yes Gorilla gorilla 76_3.1 Western gorilla 12 9
No Yes Pongo abelii 76_2 Sumatran orangutan 10 8
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 10 7
No Yes Papio anubis 76 Olive baboon 13 9
No Yes Macaca mulatta 76_1 Rhesus monkey 17 13
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 14 12
No Yes Otolemur garnettii 76_3 Small-eared galago 6 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 7 6
No Yes Rattus norvegicus 76_5.0 Norway rat 6 5
No Yes Mus musculus 76_38 House mouse 7 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 5 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 4 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 6 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 5 4
No Yes Oryctolagus cuniculus 76_2 Rabbit 9 7
No Yes Ochotona princeps 76 American pika 6 5
No Yes Tupaia belangeri 76 Northern tree shrew 4 3
No Yes Sus scrofa 76_10.2 Pig 9 9
No Yes Bos taurus 76_3.1 Cattle 9 8
No Yes Ovis aries 76_3.1 Sheep 12 10
No Yes Vicugna pacos 76_1 Alpaca 3 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 8 6
No Yes Mustela putorius furo 76_1.0 Domestic ferret 5 4
No Yes Ailuropoda melanoleuca 76_1 Giant panda 6 5
No Yes Canis familiaris 76_3.1 Dog 4 3
No Yes Felis catus 76_6.2 Domestic cat 6 6
No Yes Equus caballus 76_2 Horse 8 7
No Yes Myotis lucifugus 76_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 76_1 Large flying fox 6 5
No Yes Sorex araneus 76_1 European shrew 2 2
No Yes Erinaceus europaeus 76 Western European hedgehog 3 3
No Yes Procavia capensis 76_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 6 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 40 34
No Yes Homo sapiens (NCBI version) Human 25 20
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 6 5
No Yes Homo sapiens 69_37 Human 11 8
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 11 8
No Yes Gorilla gorilla 69_3.1 Western gorilla 11 8
No Yes Pongo abelii 69_2 Sumatran orangutan 9 7
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 11 8
No Yes Macaca mulatta 69_1 Rhesus monkey 10 8
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 7 6
No Yes Otolemur garnettii 69_3 Small-eared galago 6 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 7 6
No Yes Rattus norvegicus 69_3.4 Norway rat 7 6
No Yes Mus musculus 69_38 House mouse 6 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 5 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 4 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 5 4
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 5
No Yes Ochotona princeps 69 American pika 6 5
No Yes Tupaia belangeri 69 Northern tree shrew 4 3
No Yes Sus scrofa 69_10.2 Pig 4 4
No Yes Bos taurus 69_3.1 Cattle 8 7
No Yes Vicugna pacos 69_1 Alpaca 3 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 8 6
No Yes Mustela putorius furo 69_1.0 Domestic ferret 5 4
No Yes Ailuropoda melanoleuca 69_1 Giant panda 6 5
No Yes Canis familiaris 69_3.1 Dog 4 3
No Yes Felis catus 69 Domestic cat 5 5
No Yes Equus caballus 69_2 Horse 8 7
No Yes Myotis lucifugus 69_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 69_1 Large flying fox 6 5
No Yes Sorex araneus 69_1 European shrew 2 2
No Yes Erinaceus europaeus 69 Western European hedgehog 3 3
No Yes Procavia capensis 69_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes NCBI 2017_08 genome   1403 1157
No Yes STRING v9.0.5 (STRING)   97 78
No Yes Uniprot 2018_03 genome   826 645
No Yes PDB chains (SCOP 1.75) (PDB)   29 27
No Yes Protein Data Bank (all PDB sequenc)   116 107
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   253 253
No Yes TargetDB (Targets)   18 13

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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