Select to display Genome Domains Proteins No ALL 176325 176325 Yes Homo sapiens 76_38 Human 103 41 Yes Pan troglodytes 76_2.1.4 Chimpanzee 16 8 Yes Gorilla gorilla 76_3.1 Western gorilla 37 18 Yes Pongo abelii 76_2 Sumatran orangutan 31 11 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 30 11 Yes Papio anubis 76 Olive baboon 33 12 Yes Macaca mulatta 76_1 Rhesus monkey 30 14 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 49 22 Yes Otolemur garnettii 76_3 Small-eared galago 33 11 Yes Microcebus murinus 76_1 Gray mouse lemur 26 9 Yes Rattus norvegicus 76_5.0 Norway rat 32 10 Yes Mus musculus 76_38 House mouse 55 22 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 22 9 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 28 11 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 32 11 Yes Cavia porcellus 76_3 Domestic guinea pig 32 11 Yes Oryctolagus cuniculus 76_2 Rabbit 35 12 Yes Ochotona princeps 76 American pika 21 8 Yes Tupaia belangeri 76 Northern tree shrew 19 10 Yes Sus scrofa 76_10.2 Pig 34 13 Yes Bos taurus 76_3.1 Cattle 30 11 Yes Ovis aries 76_3.1 Sheep 36 12 Yes Vicugna pacos 76_1 Alpaca 12 6 Yes Tursiops truncatus 76_1 Bottlenose dolphin 29 10 Yes Mustela putorius furo 76_1.0 Domestic ferret 31 11 Yes Ailuropoda melanoleuca 76_1 Giant panda 31 10 Yes Canis familiaris 76_3.1 Dog 40 16 Yes Felis catus 76_6.2 Domestic cat 29 11 Yes Equus caballus 76_2 Horse 44 13 Yes Myotis lucifugus 76_2.0 Little brown bat 24 8 Yes Pteropus vampyrus 76_1 Large flying fox 25 10 Yes Sorex araneus 76_1 European shrew 8 5 Yes Erinaceus europaeus 76 Western European hedgehog 22 8 Yes Procavia capensis 76_1 Cape rock hyrax 22 9 Yes Loxodonta africana 76_3 African savanna elephant 35 13 Yes Echinops telfairi 76 Small Madagascar hedgehog 16 8 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 29 12 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 6 Yes Macropus eugenii 76_1.0 Tammar wallaby 22 8 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 34 15 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 33 11 Yes Ornithorhynchus anatinus 76_5 Platypus 18 9 Yes Saccoglossus kowalevskii v3.0 49 12 Yes Petromyzon marinus 76_7.0 Sea lamprey 14 8 Yes Meleagris gallopavo 76_2 Turkey 34 13 Yes Gallus gallus 76_4 Chicken 30 10 Yes Anas platyrhynchos 76_1.0 Mallard 27 9 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 30 9 Yes Ficedula albicollis 76_1.0 Collared flycatcher 28 9 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 47 16 Yes Anolis carolinensis 76_2.0 Green anole 31 10 Yes Xenopus laevis African clawed frog 19 8 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 38 12 Yes Latimeria chalumnae 76_1 Coelacanth 44 13 Yes Lepisosteus oculatus 76 Spotted gar 75 22 Yes Gadus morhua 76_1 Atlantic cod 31 15 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 60 21 Yes Takifugu rubripes 76_4 Torafugu 111 40 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 34 17 Yes Oryzias latipes 76_1 Japanese medaka 29 13 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 34 16 Yes Poecilia formosa 76 Amazon molly 22 15 Yes Oreochromis niloticus 76_1.0 Nile tilapia 47 20 Yes Astyanax mexicanus 76 Mexican tetra 38 19 Yes Danio rerio 76_9 Zebrafish 56 22 Yes Oikopleura dioica 2 1 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 1 Yes Ciona intestinalis 76 Vase tunicate 13 2 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 52 14 Yes Adineta vaga 2 1 Yes Octopus bimaculoides 280 17 5 Yes Crassostrea gigas 22 Pacific oyster 31 12 Yes Lottia gigantea Owl limpet 24 8 Yes Helobdella robusta 4 1 Yes Capitella sp. I 19 6 Yes Danaus plexippus OGS1.0 Monarch butterfly 4 1 Yes Heliconius melpomene Postman butterfly 2 1 Yes Bombyx mori Domestic silkworm 3 1 Yes Nasonia vitripennis Jewel wasp 4 1 Yes Apis mellifera 38.2d (Not maintained) Honey bee 4 1 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 4 1 Yes Linepithema humile v1.1 Argentine ant 2 1 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 4 1 Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 4 1 Yes Atta cephalotes v1.1 3 1 Yes Camponotus floridanus v3.3 Florida carpenter ant 3 1 Yes Lucilia cuprina Australian sheep blowfly 5 2 Yes Drosophila grimshawi 1.3 4 1 Yes Drosophila willistoni 1.3 4 1 Yes Drosophila pseudoobscura 2.13 4 1 Yes Drosophila persimilis 1.3 4 1 Yes Drosophila suzukii 4 1 Yes Drosophila yakuba 1.3 4 1 Yes Drosophila simulans 1.3 4 1 Yes Drosophila sechellia 1.3 5 2 Yes Drosophila melanogaster 76_5 Fruit fly 4 1 Yes Drosophila erecta 1.3 4 1 Yes Drosophila ananassae 1.3 4 1 Yes Drosophila virilis 1.2 4 1 Yes Drosophila mojavensis 1.3 5 1 Yes Megaselia scalaris 22 3 1 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 1 Yes Culex pipiens quinquefasciatus Southern house mosquito 4 1 Yes Anopheles gambiae 49_3j African malaria mosquito 5 1 Yes Tribolium castaneum 3.0 Red flour beetle 4 1 Yes Pediculus humanus corporis Human body louse 4 1 Yes Acyrthosiphon pisum Pea aphid 4 1 Yes Rhodnius prolixus 22 4 1 Yes Daphnia pulex Common water flea 3 1 Yes Strigamia maritima 22 5 2 Yes Sarcoptes scabiei 2 1 Yes Tetranychus urticae Two-spotted spider mite 2 2 Yes Ixodes scapularis Black-legged tick 7 4 Yes Onchocerca volvulus 22 2 2 Yes Echinococcus multilocularis 2 2 Yes Schistosoma mansoni 2 1 Yes Mnemiopsis leidyi Sea walnut 6 3 Yes Acropora digitifera v1.0 61 20 Yes Nematostella vectensis 1.0 Starlet sea anemone 22 7 Yes Hydra vulgaris 13 7 Yes Amphimedon queenslandica 7 6 Yes Trichoplax adhaerens 5 2 Yes Proterospongia sp. ATCC 50818 5 5 Yes Monosiga brevicollis 7 6 Yes Sphaeroforma arctica JP610 2 1 Yes Capsaspora owczarzaki ATCC 30864 10 7 Yes Verticillium albo-atrum VaMs.102 1 1 Yes Nectria haematococca mpVI 1 1 Yes Fusarium oxysporum f. sp. lycopersici 4286 3 3 Yes Aspergillus wentii v1.0 1 1 Yes Catenaria anguillulae PL171 v1.0 4 4 Yes Porphyridium purpureum 02_2012 6 6 Yes Thecamonas trahens ATCC 50062 2 2 Yes Cyanophora paradoxa 20 18 Yes Ectocarpus siliculosus 2 2 Yes Aureococcus anophagefferens 2 2 Yes Phytophthora capsici 1 1 Yes Fragilariopsis cylindrus 14 14 Yes Naegleria gruberi 1 1 Yes Thermobaculum terrenum ATCC BAA-798 1 1 Yes Acaryochloris marina MBIC11017 2 2 Yes Microcoleus sp. PCC 7113 1 1 Yes Cyanothece sp. PCC 8802 1 1 Yes Gloeobacter violaceus PCC 7421 2 2 Yes Rivularia sp. PCC 7116 1 1 Yes Nostoc sp. PCC 7524 15 6 Yes Conexibacter woesei DSM 14684 11 11 Yes Slackia heliotrinireducens DSM 20476 2 2 Yes Ilumatobacter coccineus 1 1 Yes Nakamurella multipartita DSM 44233 4 1 Yes Modestobacter marinus 4 2 Yes Blastococcus saxobsidens DD2 4 2 Yes Geodermatophilus obscurus DSM 43160 1 1 Yes Kineococcus radiotolerans SRS30216 2 2 Yes Catenulispora acidiphila DSM 44928 21 17 Yes Stackebrandtia nassauensis DSM 44728 4 4 Yes Frankia symbiont of Datisca glomerata 1 1 Yes Frankia sp. EAN1pec 7 5 Yes Frankia alni ACN14a 3 3 Yes Thermobifida fusca YX 1 1 Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 1 1 Yes Thermomonospora curvata DSM 43183 1 1 Yes Streptosporangium roseum DSM 43021 8 6 Yes Kitasatospora setae KM-6054 1 1 Yes Streptomyces coelicolor A3(2) 3 3 Yes Streptomyces sp. PAMC26508 3 3 Yes Streptomyces flavogriseus ATCC 33331 3 3 Yes Streptomyces sp. SirexAA-E 1 1 Yes Streptomyces griseus subsp. griseus NBRC 13350 5 4 Yes Streptomyces bingchenggensis BCW-1 2 2 Yes Streptomyces violaceusniger Tu 4113 2 2 Yes Streptomyces cattleya NRRL 8057 = DSM 46488 1 1 Yes Streptomyces scabiei 87.22 4 4 Yes Streptomyces hygroscopicus subsp. jinggangensis 5008 1 1 Yes Actinosynnema mirum DSM 43827 1 1 Yes Saccharomonospora viridis DSM 43017 4 4 Yes Saccharopolyspora erythraea NRRL 2338 1 1 Yes Amycolatopsis mediterranei U32 2 2 Yes Kribbella flavida DSM 17836 11 6 Yes Nocardioides sp. JS614 4 2 Yes Propionibacterium propionicum F0230a 1 1 Yes Propionibacterium acnes SK137 3 3 Yes Verrucosispora maris AB-18-032 8 6 Yes Micromonospora sp. L5 5 5 Yes Micromonospora aurantiaca ATCC 27029 3 3 Yes Actinoplanes sp. N902-109 6 4 Yes Actinoplanes sp. SE50/110 6 5 Yes Actinoplanes missouriensis 431 12 9 Yes Rhodococcus erythropolis PR4 1 1 Yes Mycobacterium sp. JLS 1 1 Yes Tropheryma whipplei TW08/27 1 1 Yes Beutenbergia cavernae DSM 12333 2 1 Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382 6 1 Yes Jonesia denitrificans DSM 20603 3 3 Yes Intrasporangium calvum DSM 43043 1 1 Yes Brachybacterium faecium DSM 4810 5 2 Yes Isoptericola variabilis 225 11 8 Yes Xylanimonas cellulosilytica DSM 15894 2 2 Yes Cellulomonas flavigena DSM 20109 9 6 Yes Cellulomonas fimi ATCC 484 10 6 Yes [Cellvibrio] gilvus ATCC 13127 4 3 Yes Arthrobacter phenanthrenivorans Sphe3 1 1 Yes Arthrobacter arilaitensis Re117 4 2 Yes Arthrobacter sp. FB24 1 1 Yes Micrococcus luteus NCTC 2665 1 1 Yes Bifidobacterium bifidum S17 2 2 Yes Arcanobacterium haemolyticum DSM 20595 3 3 Yes Mobiluncus curtisii ATCC 43063 1 1 Yes Actinomyces sp. F0330 1 1 Yes Caldilinea aerophila DSM 14535 = NBRC 104270 11 2 Yes Anaerolinea thermophila UNI-1 3 1 Yes Sphaerobacter thermophilus DSM 20745 3 2 Yes Herpetosiphon aurantiacus DSM 785 4 4 Yes Roseiflexus sp. RS-1 4 2 Yes Roseiflexus castenholzii DSM 13941 4 2 Yes Chloroflexus sp. MS-G 1 1 Yes Chloroflexus sp. Y-400-fl 2 2 Yes Chloroflexus aurantiacus J-10-fl 2 2 Yes Truepera radiovictrix DSM 17093 15 10 Yes Deinococcus gobiensis I-0 4 4 Yes Deinococcus deserti VCD115 4 4 Yes Deinococcus maricopensis DSM 21211 5 4 Yes Deinococcus geothermalis DSM 11300 7 5 Yes Deinococcus proteolyticus MRP 3 3 Yes Deinococcus radiodurans R1 2 2 Yes Oceanithermus profundus DSM 14977 6 4 Yes Marinithermus hydrothermalis DSM 14884 2 2 Yes Meiothermus silvanus DSM 9946 4 2 Yes Meiothermus ruber DSM 1279 1 1 Yes Thermus sp. CCB_US3_UF1 2 2 Yes Symbiobacterium thermophilum IAM 14863 2 1 Yes Clostridium clariflavum DSM 19732 4 4 Yes Clostridium cellulolyticum H10 7 6 Yes Clostridium thermocellum ATCC 27405 3 2 Yes Ruminococcus bromii 2 2 Yes Thermaerobacter marianensis DSM 12885 1 1 Yes Oscillibacter valericigenes Sjm18-20 2 1 Yes Candidatus Desulforudis audaxviator MP104C 1 1 Yes Syntrophobotulus glycolicus DSM 8271 2 1 Yes Desulfitobacterium hafniense Y51 3 2 Yes Desulfotomaculum kuznetsovii DSM 6115 1 1 Yes Acetobacterium woodii DSM 1030 3 1 Yes Clostridium saccharolyticum WM1 1 1 Yes Clostridium phytofermentans ISDg 1 1 Yes Clostridium lentocellum DSM 5427 6 5 Yes Coprococcus sp. ART55/1 1 1 Yes Heliobacterium modesticaldum Ice1 2 1 Yes Candidatus Arthromitus sp. SFB-mouse-Japan 1 1 Yes Clostridium sp. BNL1100 5 5 Yes Clostridium perfringens ATCC 13124 2 2 Yes Clostridium botulinum A str. ATCC 3502 1 1 Yes Thermosediminibacter oceani DSM 16646 4 1 Yes Caldicellulosiruptor kronotskyensis 2002 1 1 Yes Caldicellulosiruptor hydrothermalis 108 1 1 Yes Caldicellulosiruptor saccharolyticus DSM 8903 2 1 Yes Thermoanaerobacterium thermosaccharolyticum DSM 571 4 2 Yes Moorella thermoacetica ATCC 39073 1 1 Yes Thermoanaerobacter mathranii subsp. mathranii str. A3 5 3 Yes Enterococcus hirae ATCC 9790 1 1 Yes Lactobacillus plantarum JDM1 1 1 Yes Streptococcus pasteurianus ATCC 43144 1 1 Yes Streptococcus macedonicus ACA-DC 198 1 1 Yes Brevibacillus brevis NBRC 100599 1 1 Yes Paenibacillus sp. JDR-2 5 3 Yes Paenibacillus terrae HPL-003 4 3 Yes Paenibacillus mucilaginosus 3016 4 3 Yes Paenibacillus polymyxa M1 3 2 Yes Listeria welshimeri serovar 6b str. SLCC5334 2 2 Yes Listeria innocua Clip11262 3 3 Yes Listeria seeligeri serovar 1/2b str. SLCC3954 21 9 Yes Listeria monocytogenes serotype 4b str. CLIP 80459 5 4 Yes Listeria ivanovii subsp. ivanovii PAM 55 2 2 Yes Lysinibacillus sphaericus C3-41 1 1 Yes Bacillus halodurans C-125 1 1 Yes Bacillus weihenstephanensis KBAB4 2 2 Yes Bacillus thuringiensis str. Al Hakam 2 2 Yes Bacillus cereus 03BB102 2 2 Yes Bacillus anthracis str. A0248 3 3 Yes Bacillus cellulosilyticus DSM 2522 2 2 Yes Candidatus Cloacamonas acidaminovorans 2 2 Yes Gemmatimonas aurantiaca T-27 1 1 Yes Melioribacter roseus P3M 1 1 Yes Ignavibacterium album JCM 16511 1 1 Yes Chloroherpeton thalassium ATCC 35110 9 1 Yes Haliscomenobacter hydrossis DSM 1100 41 25 Yes Saprospira grandis str. Lewin 33 14 Yes Niastella koreensis GR20-10 104 33 Yes Chitinophaga pinensis DSM 2588 96 28 Yes Salinibacter ruber M8 13 8 Yes Rhodothermus marinus DSM 4252 4 2 Yes Flexibacter litoralis DSM 6794 23 11 Yes Belliella baltica DSM 15883 3 3 Yes Cyclobacterium marinum DSM 745 12 10 Yes Marivirga tractuosa DSM 4126 54 17 Yes Fibrella aestuarina 15 13 Yes Leadbetterella byssophila DSM 17132 7 4 Yes Dyadobacter fermentans DSM 18053 13 11 Yes Cytophaga hutchinsonii ATCC 33406 58 31 Yes Spirosoma linguale DSM 74 22 20 Yes Runella slithyformis DSM 19594 18 14 Yes Parabacteroides distasonis ATCC 8503 1 1 Yes Paludibacter propionicigenes WB4 8 5 Yes Odoribacter splanchnicus DSM 20712 15 6 Yes Prevotella melaninogenica ATCC 25845 2 2 Yes Prevotella intermedia 17 3 2 Yes Prevotella denticola F0289 1 1 Yes Porphyromonas asaccharolytica DSM 20707 1 1 Yes Porphyromonas gingivalis ATCC 33277 3 1 Yes Alistipes finegoldii DSM 17242 8 5 Yes Bacteroides salanitronis DSM 18170 2 1 Yes Bacteroides helcogenes P 36-108 1 1 Yes Bacteroides thetaiotaomicron VPI-5482 2 2 Yes Bacteroides fragilis YCH46 4 2 Yes Pedobacter saltans DSM 12145 7 4 Yes Solitalea canadensis DSM 3403 28 6 Yes Pedobacter heparinus DSM 2366 34 6 Yes Sphingobacterium sp. 21 3 3 Yes Fluviicola taffensis DSM 16823 98 49 Yes Owenweeksia hongkongensis DSM 17368 98 46 Yes Zunongwangia profunda SM-A87 4 3 Yes Krokinobacter sp. 4H-3-7-5 1 1 Yes Gramella forsetii KT0803 8 6 Yes Lacinutrix sp. 5H-3-7-4 7 6 Yes Maribacter sp. HTCC2170 16 7 Yes Robiginitalea biformata HTCC2501 15 7 Yes Croceibacter atlanticus HTCC2559 3 3 Yes Aequorivita sublithincola DSM 14238 2 2 Yes Zobellia galactanivorans 26 13 Yes Muricauda ruestringensis DSM 13258 24 11 Yes Cellulophaga algicola DSM 14237 17 11 Yes Cellulophaga lytica DSM 7489 8 6 Yes Polaribacter sp. MED152 10 8 Yes Riemerella anatipestifer ATCC 11845 = DSM 15868 5 3 Yes Ornithobacterium rhinotracheale DSM 15997 5 3 Yes Capnocytophaga canimorsus Cc5 3 1 Yes Capnocytophaga ochracea DSM 7271 3 1 Yes Weeksella virosa DSM 16922 1 1 Yes Flavobacterium indicum GPTSA100-9 5 4 Yes Flavobacterium psychrophilum JIP02/86 3 2 Yes Flavobacterium branchiophilum FL-15 3 2 Yes Flavobacterium columnare ATCC 49512 4 3 Yes Flavobacterium johnsoniae UW101 26 12 Yes Candidatus Protochlamydia amoebophila UWE25 1 1 Yes Isosphaera pallida ATCC 43644 4 4 Yes Rhodopirellula baltica SH 1 5 2 Yes Coraliomargarita akajimensis DSM 45221 6 4 Yes Opitutus terrae PB90-1 1 1 Yes Spirochaeta smaragdinae DSM 11293 1 1 Yes Sphaerochaeta pleomorpha str. Grapes 2 2 Yes Spirochaeta africana DSM 8902 4 4 Yes Desulfurispirillum indicum S5 5 2 Yes Fervidobacterium nodosum Rt17-B1 1 1 Yes Thermosipho melanesiensis BI429 1 1 Yes Thermosipho africanus TCF52B 1 1 Yes Thermovibrio ammonificans HB-1 3 1 Yes Persephonella marina EX-H1 6 2 Yes Caldisericum exile AZM16c01 1 1 Yes Candidatus Chloracidobacterium thermophilum B 2 1 Yes Candidatus Solibacter usitatus Ellin6076 11 6 Yes Granulicella tundricola MP5ACTX9 7 3 Yes Granulicella mallensis MP5ACTX8 3 3 Yes Candidatus Koribacter versatilis Ellin345 2 2 Yes Terriglobus saanensis SP1PR4 4 3 Yes Terriglobus roseus DSM 18391 2 2 Yes Acidobacterium capsulatum ATCC 51196 1 1 Yes Candidatus Nitrospira defluvii 1 1 Yes Candidatus Methylomirabilis oxyfera 1 1 Yes candidate division SR1 bacterium RAAC1_SR1_1 8 4 Yes Candidatus Saccharimonas aalborgensis 1 1 Yes Acidithiobacillus ferrooxidans ATCC 53993 1 1 Yes Bacteriovorax marinus SJ 5 2 Yes Bdellovibrio bacteriovorus HD100 2 1 Yes Nitratifractor salsuginis DSM 16511 2 2 Yes Sulfurovum sp. NBC37-1 1 1 Yes Syntrophus aciditrophicus SB 6 2 Yes Desulfomonile tiedjei DSM 6799 2 1 Yes Syntrophobacter fumaroxidans MPOB 1 1 Yes Desulfobulbus propionicus DSM 2032 5 3 Yes Desulfatibacillum alkenivorans AK-01 16 4 Yes Desulfococcus oleovorans Hxd3 1 1 Yes Desulfomicrobium baculatum DSM 4028 1 1 Yes Desulfovibrio africanus str. Walvis Bay 7 3 Yes Geobacter daltonii FRC-32 3 3 Yes Geobacter sp. M21 14 3 Yes Geobacter uraniireducens Rf4 12 4 Yes Geobacter lovleyi SZ 1 1 Yes Geobacter bemidjiensis Bem 12 1 Yes Geobacter sulfurreducens KN400 3 3 Yes Geobacter metallireducens GS-15 2 2 Yes Babela massiliensis 5 2 Yes Haliangium ochraceum DSM 14365 4 4 Yes Sorangium cellulosum 'So ce 56' 1 1 Yes Anaeromyxobacter sp. Fw109-5 3 2 Yes Anaeromyxobacter dehalogenans 2CP-1 6 4 Yes Stigmatella aurantiaca DW4/3-1 24 21 Yes Corallococcus coralloides DSM 2259 21 17 Yes Myxococcus xanthus DK 1622 8 7 Yes Myxococcus fulvus HW-1 4 4 Yes Methylibium petroleiphilum PM1 1 1 Yes Burkholderia phymatum STM815 1 1 Yes Burkholderia xenovorans LB400 3 2 Yes Ralstonia pickettii 12D 1 1 Yes Burkholderia ambifaria AMMD 3 2 Yes Burkholderia gladioli BSR3 1 1 Yes Variovorax paradoxus S110 1 1 Yes Hirschia baltica ATCC 49814 1 1 Yes Hyphomonas neptunium ATCC 15444 1 1 Yes Dinoroseobacter shibae DFL 12 2 2 Yes Ruegeria pomeroyi DSS-3 13 1 Yes Roseobacter litoralis Och 149 1 1 Yes Roseobacter denitrificans OCh 114 1 1 Yes Rhodospirillum photometricum DSM 122 4 1 Yes Polymorphum gilvum SL003B-26A1 15 1 Yes Candidatus Puniceispirillum marinum IMCC1322 1 1 Yes Saccharophagus degradans 2-40 9 6 Yes Teredinibacter turnerae T7901 14 7 Yes Cellvibrio japonicus Ueda107 9 6 Yes Aeromonas salmonicida subsp. salmonicida A449 2 2 Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966 2 2 Yes Vibrio fischeri MJ11 2 1 Yes Vibrio sp. Ex25 3 3 Yes Vibrio harveyi ATCC BAA-1116 2 2 Yes Vibrio parahaemolyticus RIMD 2210633 3 3 Yes Vibrio splendidus LGP32 3 2 Yes Vibrio anguillarum 775 5 3 Yes Vibrio furnissii NCTC 11218 3 2 Yes Vibrio vulnificus MO6-24/O 3 2 Yes Vibrio cholerae O395 4 2 Yes Photobacterium profundum SS9 1 1 Yes Psychromonas ingrahamii 37 2 1 Yes Idiomarina loihiensis L2TR 1 1 Yes Ferrimonas balearica DSM 9799 2 2 Yes Shewanella piezotolerans WP3 14 7 Yes Shewanella loihica PV-4 4 3 Yes Shewanella halifaxensis HAW-EB4 3 2 Yes Shewanella sediminis HAW-EB3 7 4 Yes Shewanella denitrificans OS217 9 6 Yes Shewanella pealeana ATCC 700345 2 1 Yes Shewanella oneidensis MR-1 5 3 Yes Shewanella baltica OS185 5 4 Yes Shewanella woodyi ATCC 51908 16 11 Yes Shewanella sp. MR-4 5 3 Yes Shewanella amazonensis SB2B 8 7 Yes Shewanella violacea DSS12 17 11 Yes Shewanella frigidimarina NCIMB 400 3 2 Yes Shewanella putrefaciens CN-32 4 3 Yes Colwellia psychrerythraea 34H 4 4 Yes Pseudoalteromonas sp. SM9913 2 2 Yes Pseudoalteromonas atlantica T6c 4 1 Yes Pseudoalteromonas haloplanktis TAC125 1 1 Yes Glaciecola sp. 4H-3-7+YE-5 3 1 Yes Glaciecola nitratireducens FR1064 4 1 Yes Alteromonas sp. SN2 2 2 Yes Alteromonas macleodii str. 'Deep ecotype' 9 3 Yes Kangiella koreensis DSM 16069 6 4 Yes Hahella chejuensis KCTC 2396 7 6 Yes Marinomonas mediterranea MMB-1 1 1 Yes Methylomicrobium alcaliphilum 2 1 Yes Methylomonas methanica MC09 5 3 Yes Methylococcus capsulatus str. Bath 5 4 Yes Rhodanobacter denitrificans 1 1 Yes Pseudoxanthomonas spadix BD-a59 1 1 Yes Stenotrophomonas maltophilia K279a 1 1 Yes Halothiobacillus neapolitanus c2 1 1 Yes Alkalilimnicola ehrlichii MLHE-1 1 1 Yes Nitrosococcus watsonii C-113 1 1 Yes Nitrosococcus oceani ATCC 19707 1 1 Yes Rahnella sp. Y9602 4 3 Yes Rahnella aquatilis CIP 78.65 = ATCC 33071 3 3 Yes Yersinia pseudotuberculosis IP 31758 1 1 Yes Yersinia pestis Pestoides F 1 1 Yes Dickeya dadantii Ech703 1 1 Yes Cronobacter turicensis z3032 1 1 Yes Cronobacter sakazakii ES15 1 1 Yes Salmonella bongori NCTC 12419 1 1 Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 1 1 Yes Klebsiella oxytoca E718 1 1 Yes Enterobacter aerogenes KCTC 2190 1 1 Yes Enterobacter asburiae LF7a 2 2 Yes Enterobacter cloacae subsp. dissolvens SDM 2 2 Yes Citrobacter koseri ATCC BAA-895 2 2 Yes Nanoarchaeum equitans Kin4-M 1 1 Yes Candidatus Korarchaeum cryptofilum OPF8 9 4 Yes Acidilobus saccharovorans 345-15 1 1 Yes Aeropyrum pernix K1 2 1 Yes Desulfurococcus fermentans DSM 16532 1 1 Yes Desulfurococcus mucosus DSM 2162 1 1 Yes Metallosphaera cuprina Ar-4 1 1 Yes Metallosphaera sedula DSM 5348 3 2 Yes Acidianus hospitalis W1 1 1 Yes Sulfolobus tokodaii str. 7 1 1 Yes Sulfolobus islandicus Y.N.15.51 1 1 Yes Sulfolobus solfataricus P2 1 1 Yes Sulfolobus acidocaldarius DSM 639 3 2 Yes halophilic archaeon DL31 2 2 Yes Methanocella arvoryzae MRE50 4 3 Yes Methanocella conradii HZ254 17 3 Yes Methanocella paludicola SANAE 3 2 Yes Methanosaeta harundinacea 6Ac 8 4 Yes Methanosaeta concilii GP6 1 1 Yes Methanosalsum zhilinae DSM 4017 9 6 Yes Methanohalobium evestigatum Z-7303 3 2 Yes Methanococcoides burtonii DSM 6242 6 3 Yes Methanosarcina acetivorans C2A 232 58 Yes Methanosarcina mazei Go1 69 25 Yes Methanosarcina barkeri str. Fusaro 244 60 Yes Methanohalophilus mahii DSM 5219 7 6 Yes Methanosphaerula palustris E1-9c 150 34 Yes Methanoregula boonei 6A8 48 11 Yes Methanospirillum hungatei JF-1 150 40 Yes Methanocorpusculum labreanum Z 4 3 Yes Methanoplanus petrolearius DSM 11571 43 13 Yes Methanoculleus bourgensis MS2 19 10 Yes Methanoculleus marisnigri JR1 10 4 Yes Ferroglobus placidus DSM 10642 2 2 Yes Archaeoglobus profundus DSM 5631 1 1 Yes Archaeoglobus veneficus SNP6 2 2 Yes Archaeoglobus fulgidus DSM 4304 3 2 Yes Thermococcus sp. 4557 3 1 Yes Thermococcus gammatolerans EJ3 2 1 Yes Thermococcus barophilus MP 3 1 Yes Pyrococcus sp. ST04 2 1 Yes Pyrococcus horikoshii OT3 2 1 Yes Pyrococcus furiosus COM1 1 1 Yes Thermoplasmatales archaeon BRNA1 3 3 Yes Salinarchaeum sp. Harcht-Bsk1 26 11 Yes Halopiger xanaduensis SH-6 2 1 Yes Haloterrigena turkmenica DSM 5511 2 2 Yes Natrinema sp. J7-2 6 6 Yes Natrialba magadii ATCC 43099 2 2 Yes Halorubrum lacusprofundi ATCC 49239 6 1 Yes Halogeometricum borinquense DSM 11551 9 9 Yes Haloferax mediterranei ATCC 33500 7 6 Yes Haloferax volcanii DS2 1 1 Yes Halomicrobium mukohataei DSM 12286 16 10 Yes Halorhabdus utahensis DSM 12940 15 10 Yes Natronomonas pharaonis DSM 2160 4 3 Yes Haloarcula hispanica ATCC 33960 4 4 Yes Haloarcula marismortui ATCC 43049 3 3 Yes Halobacterium salinarum R1 4 4 Yes Halobacterium sp. NRC-1 4 4 Yes Methanotorris igneus Kol 5 5 3 Yes Methanocaldococcus sp. FS406-22 6 1 Yes Methanocaldococcus fervens AG86 7 2 Yes Methanocaldococcus vulcanius M7 6 1 Yes methanocaldococcus infernus ME 6 2 Yes Methanocaldococcus jannaschii DSM 2661 5 1 Yes Methanothermococcus okinawensis IH1 10 4 Yes Methanococcus aeolicus Nankai-3 2 2 Yes Methanococcus voltae A3 2 2 Yes Methanococcus vannielii SB 1 1 Yes Methanothermobacter marburgensis str. Marburg 4 4 Yes Methanothermobacter thermautotrophicus str. Delta H 5 4 Yes Aciduliprofundum sp. MAR08-339 2 2 Yes Aciduliprofundum boonei T469 5 3 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 28 11 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 8 2 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 5 1 Yes Ascaris suum Victoria/Ghent Pig roundworm 2 1 Yes Synechococcus sp. JA-2-3B'a(2-13) 1 1 Yes Crinalium epipsammum PCC 9333 1 1 Yes Cyanothece sp. PCC 7822 13 2 Yes Cyanothece sp. ATCC 51142 1 1 Yes Cyanothece sp. PCC 8801 1 1 Yes Stanieria cyanosphaera PCC 7437 14 1 Yes Anabaena cylindrica PCC 7122 7 2 Yes Frankia sp. EuI1c 22 11 Yes Frankia sp. CcI3 1 1 Yes Nocardiopsis alba ATCC BAA-2165 1 1 Yes Streptomyces albus J1074 2 2 Yes Streptomyces rapamycinicus NRRL 5491 1 1 Yes Streptomyces davawensis JCM 4913 7 7 Yes Streptomyces fulvissimus DSM 40593 5 4 Yes Streptomyces venezuelae ATCC 10712 1 1 Yes Streptomyces cattleya NRRL 8057 = DSM 46488 1 1 Yes Streptomyces hygroscopicus subsp. jinggangensis TL01 1 1 Yes Saccharothrix espanaensis DSM 44229 2 2 Yes Amycolatopsis mediterranei RB 2 2 Yes Amycolatopsis mediterranei S699 2 2 Yes Amycolatopsis mediterranei S699 2 2 Yes Amycolatopsis orientalis HCCB10007 6 6 Yes Propionibacterium avidum 44067 1 1 Yes Propionibacterium acnes ATCC 11828 2 2 Yes Propionibacterium acnes TypeIA2 P.acn31 2 2 Yes Propionibacterium acnes TypeIA2 P.acn17 3 3 Yes Propionibacterium acnes TypeIA2 P.acn33 3 3 Yes Propionibacterium acnes C1 3 3 Yes Propionibacterium acnes 6609 1 1 Yes Propionibacterium acnes 266 3 3 Yes Propionibacterium acnes KPA171202 3 3 Yes Propionibacterium acidipropionici ATCC 4875 6 3 Yes Actinoplanes friuliensis DSM 7358 13 12 Yes Mycobacterium sp. KMS 1 1 Yes Mycobacterium sp. MCS 1 1 Yes Tropheryma whipplei str. Twist 1 1 Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 4 2 Yes Bifidobacterium longum NCC2705 1 1 Yes Bifidobacterium longum DJO10A 1 1 Yes Bifidobacterium breve UCC2003 1 1 Yes Bifidobacterium bifidum PRL2010 2 2 Yes Bifidobacterium bifidum BGN4 2 2 Yes Chthonomonas calidirosea T49 1 1 Yes Deinococcus peraridilitoris DSM 19664 6 6 Yes Thermus thermophilus JL-18 1 1 Yes Clostridium thermocellum DSM 1313 3 2 Yes Ruminococcus champanellensis 18P13 1 1 Yes Desulfitobacterium dichloroeliminans LMG P-21439 3 3 Yes Desulfotomaculum gibsoniae DSM 7213 2 2 Yes Roseburia intestinalis XB6B4 1 1 Yes Candidatus Arthromitus sp. SFB-rat-Yit 1 1 Yes Candidatus Arthromitus sp. SFB-mouse-Yit 1 1 Yes Clostridium perfringens SM101 2 2 Yes Clostridium perfringens str. 13 2 2 Yes Clostridium botulinum H04402 065 1 1 Yes Clostridium botulinum F str. Langeland 1 1 Yes Clostridium botulinum E3 str. Alaska E43 1 1 Yes Clostridium botulinum B1 str. Okra 1 1 Yes Clostridium botulinum Ba4 str. 657 1 1 Yes Clostridium botulinum A2 str. Kyoto 1 1 Yes Clostridium botulinum A3 str. Loch Maree 1 1 Yes Clostridium botulinum A str. Hall 1 1 Yes Clostridium botulinum A str. ATCC 19397 1 1 Yes Thermacetogenium phaeum DSM 12270 3 2 Yes Carnobacterium maltaromaticum LMA28 1 1 Yes Enterococcus mundtii QU 25 1 1 Yes Enterococcus casseliflavus EC20 1 1 Yes Lactobacillus plantarum 16 1 1 Yes Lactobacillus plantarum ZJ316 1 1 Yes Lactobacillus plantarum subsp. plantarum ST-III 1 1 Yes Lactobacillus plantarum subsp. plantarum P-8 1 1 Yes Lactobacillus plantarum WCFS1 1 1 Yes Lactococcus lactis subsp. lactis KLDS 4.0325 1 1 Yes Lactococcus lactis subsp. lactis IO-1 1 1 Yes Lactococcus lactis subsp. lactis CV56 1 1 Yes Lactococcus lactis subsp. lactis KF147 1 1 Yes Lactococcus lactis subsp. lactis Il1403 1 1 Yes Lactococcus lactis subsp. cremoris KW2 1 1 Yes Thermobacillus composti KWC4 3 2 Yes Paenibacillus sp. Y412MC10 3 3 Yes Paenibacillus mucilaginosus KNP414 4 3 Yes Paenibacillus mucilaginosus K02 4 3 Yes Paenibacillus larvae subsp. larvae DSM 25430 1 1 Yes Paenibacillus polymyxa CR1 4 3 Yes Paenibacillus polymyxa SC2 3 2 Yes Paenibacillus polymyxa E681 3 2 Yes Listeria monocytogenes EGD sequence 5 4 Yes Listeria monocytogenes N53-1 6 6 Yes Listeria monocytogenes La111 5 5 Yes Listeria monocytogenes serotype 4b str. LL195 4 3 Yes Listeria monocytogenes 07PF0776 5 4 Yes Listeria monocytogenes M7 6 5 Yes Listeria monocytogenes J1-220 4 3 Yes Listeria monocytogenes J1816 4 3 Yes Listeria monocytogenes SLCC2376 7 6 Yes Listeria monocytogenes SLCC5850 5 4 Yes Listeria monocytogenes ATCC 19117 4 3 Yes Listeria monocytogenes L312 5 4 Yes Listeria monocytogenes SLCC2479 6 5 Yes Listeria monocytogenes SLCC7179 8 6 Yes Listeria monocytogenes SLCC2540 4 3 Yes Listeria monocytogenes SLCC2378 4 3 Yes Listeria monocytogenes serotype 1/2b str. SLCC2755 4 3 Yes Listeria monocytogenes serotype 1/2c str. SLCC2372 7 6 Yes Listeria monocytogenes serotype 7 str. SLCC2482 4 3 Yes Listeria monocytogenes 08-5578 5 4 Yes Listeria monocytogenes 08-5923 5 4 Yes Listeria monocytogenes L99 6 5 Yes Listeria monocytogenes HCC23 6 5 Yes Listeria monocytogenes 10403S 5 4 Yes Listeria monocytogenes J0161 6 5 Yes Listeria monocytogenes Finland 1998 5 4 Yes Listeria monocytogenes FSL R2-561 6 5 Yes Listeria monocytogenes serotype 4b str. F2365 4 3 Yes Listeria monocytogenes EGD-e 6 5 Yes Bacillus cereus subsp. cytotoxis NVH 391-98 1 1 Yes Bacillus toyonensis BCT-7112 2 2 Yes Bacillus thuringiensis HD-771 2 2 Yes Bacillus thuringiensis HD-789 2 2 Yes Bacillus thuringiensis MC28 2 2 Yes Bacillus thuringiensis serovar chinensis CT-43 2 2 Yes Bacillus thuringiensis YBT-1518 3 3 Yes Bacillus thuringiensis Bt407 3 3 Yes Bacillus thuringiensis serovar konkukian str. 97-27 2 2 Yes Bacillus thuringiensis serovar kurstaki str. HD73 3 3 Yes Bacillus thuringiensis BMB171 3 3 Yes Bacillus thuringiensis serovar finitimus YBT-020 2 2 Yes Bacillus thuringiensis serovar thuringiensis str. IS5056 4 4 Yes Bacillus cereus FRI-35 2 2 Yes Bacillus cereus biovar anthracis str. CI 2 2 Yes Bacillus cereus AH820 2 2 Yes Bacillus cereus AH187 2 2 Yes Bacillus cereus B4264 2 2 Yes Bacillus cereus G9842 2 2 Yes Bacillus cereus Q1 2 2 Yes Bacillus cereus F837/76 2 2 Yes Bacillus cereus NC7401 2 2 Yes Bacillus cereus E33L 3 3 Yes Bacillus cereus ATCC 14579 4 4 Yes Bacillus cereus ATCC 10987 2 2 Yes Bacillus anthracis str. H9401 3 3 Yes Bacillus anthracis str. CDC 684 3 3 Yes Bacillus anthracis str. 'Ames Ancestor' 3 3 Yes Bacillus anthracis str. Sterne 3 3 Yes Bacillus anthracis str. Ames 3 3 Yes Salinibacter ruber DSM 13855 9 7 Yes Rhodothermus marinus SG0.5JP17-172 5 3 Yes Echinicola vietnamensis DSM 17526 9 3 Yes Emticicia oligotrophica DSM 17448 10 8 Yes Prevotella sp. oral taxon 299 str. F0039 1 1 Yes Prevotella dentalis DSM 3688 1 1 Yes Porphyromonas gingivalis TDC60 3 1 Yes Porphyromonas gingivalis W83 3 1 Yes Alistipes shahii WAL 8301 6 4 Yes Bacteroides xylanisolvens XB1A 10 8 Yes Bacteroides fragilis 638R 3 2 Yes Bacteroides fragilis NCTC 9343 2 1 Yes Nonlabens dokdonensis DSW-6 16 12 Yes Psychroflexus torquis ATCC 700755 4 4 Yes Riemerella anatipestifer RA-CH-2 6 4 Yes Riemerella anatipestifer RA-CH-1 6 4 Yes Riemerella anatipestifer RA-GD 3 2 Yes Riemerella anatipestifer ATCC 11845 = DSM 15868 5 3 Yes Singulisphaera acidiphila DSM 18658 20 5 Yes Treponema pedis str. T A4 1 1 Yes Acidithiobacillus ferrooxidans ATCC 23270 1 1 Yes Bdellovibrio exovorus JSS 2 1 Yes Bdellovibrio bacteriovorus str. Tiberius 3 2 Yes Geobacter sp. M18 4 4 Yes Geobacter sulfurreducens PCA 3 3 Yes Sorangium cellulosum So0157-2 3 3 Yes Anaeromyxobacter sp. K 6 4 Yes Anaeromyxobacter dehalogenans 2CP-C 4 2 Yes Myxococcus stipitatus DSM 14675 12 11 Yes Ralstonia pickettii 12J 1 1 Yes Burkholderia sp. CCGE1003 1 1 Yes Variovorax paradoxus B4 2 2 Yes Variovorax paradoxus EPS 1 1 Yes Simiduia agarivorans SA1 = DSM 21679 6 5 Yes Aeromonas hydrophila ML09-119 2 2 Yes Vibrio fischeri ES114 2 1 Yes Vibrio sp. EJY3 4 4 Yes Vibrio parahaemolyticus BB22OP 3 3 Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749 3 3 Yes Vibrio anguillarum Listonella anguillarum M3 5 3 Yes Vibrio nigripulchritudo VibrioScope 9 8 Yes Vibrio vulnificus CMCP6 2 2 Yes Vibrio vulnificus YJ016 5 3 Yes Vibrio cholerae LMA3984-4 4 2 Yes Vibrio cholerae M66-2 4 2 Yes Vibrio cholerae O395 4 2 Yes Vibrio cholerae IEC224 4 2 Yes Vibrio cholerae O1 str. 2010EL-1786 4 2 Yes Vibrio cholerae MJ-1236 4 2 Yes Vibrio cholerae O1 biovar El Tor str. N16961 4 2 Yes Idiomarina loihiensis GSL 199 1 1 Yes Shewanella sp. W3-18-1 4 3 Yes Shewanella sp. ANA-3 6 5 Yes Shewanella baltica BA175 6 5 Yes Shewanella baltica OS678 5 4 Yes Shewanella baltica OS117 6 5 Yes Shewanella baltica OS223 4 3 Yes Shewanella baltica OS195 5 4 Yes Shewanella baltica OS155 6 5 Yes Shewanella sp. MR-7 5 3 Yes Shewanella putrefaciens 200 3 2 Yes Alteromonas macleodii str. 'Ionian Sea UM4b' 1 1 Yes Alteromonas macleodii str. 'Ionian Sea UM7' 8 4 Yes Alteromonas macleodii str. 'Ionian Sea U8' 4 2 Yes Alteromonas macleodii str. 'Ionian Sea U7' 4 2 Yes Alteromonas macleodii str. 'Ionian Sea U4' 4 2 Yes Alteromonas macleodii str. 'Aegean Sea MED64' 1 1 Yes Alteromonas macleodii AltDE1 8 4 Yes Alteromonas macleodii str. 'English Channel 673' 2 2 Yes Alteromonas macleodii str. 'Balearic Sea AD45' 2 2 Yes Alteromonas macleodii str. 'Black Sea 11' 2 2 Yes Alteromonas macleodii ATCC 27126 2 2 Yes Alcanivorax dieselolei B5 10 2 Yes Thalassolituus oleivorans MIL-1 1 1 Yes Stenotrophomonas maltophilia D457 1 1 Yes Stenotrophomonas maltophilia JV3 1 1 Yes Thioalkalivibrio nitratireducens DSM 14787 1 1 Yes Thioflavicoccus mobilis 8321 8 4 Yes Rahnella aquatilis HX2 4 3 Yes Yersinia pseudotuberculosis PB1/+ 1 1 Yes Yersinia pseudotuberculosis YPIII 1 1 Yes Yersinia pseudotuberculosis IP 32953 1 1 Yes Yersinia pestis biovar Microtus str. 91001 1 1 Yes Yersinia pestis A1122 1 1 Yes Yersinia pestis Z176003 1 1 Yes Yersinia pestis D182038 1 1 Yes Yersinia pestis D106004 1 1 Yes Yersinia pestis biovar Medievalis str. Harbin 35 1 1 Yes Yersinia pestis Nepal516 1 1 Yes Yersinia pestis Antiqua 1 1 Yes Yersinia pestis Angola 1 1 Yes Yersinia pestis CO92 1 1 Yes Yersinia pestis KIM10+ 1 1 Yes Cronobacter sakazakii CMCC 45402 1 1 Yes Cronobacter sakazakii SP291 1 1 Yes Cronobacter sakazakii ATCC BAA-894 1 1 Yes Salmonella bongori N268-08 1 1 Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 1 1 Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 1 1 Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 1 1 Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 1 1 Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 1 1 Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 1 1 Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 1 1 Yes Salmonella enterica subsp. enterica serovar Newport str. SL254 1 1 Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 1 1 Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1 1 Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104 1 1 Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18 1 1 Yes Salmonella enterica serovar Bovismorbificans genomics 1 1 Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 1 1 Yes Salmonella enterica subsp. enterica serovar Agona str. 24249 1 1 Yes Salmonella enterica subsp. enterica serovar Agona str. SL483 1 1 Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 1 1 Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 1 1 Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 1 1 Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 1 1 Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 1 1 Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182 1 1 Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 1 1 Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 1 1 Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004 1 1 Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 1 1 Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 1 1 Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1 1 Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 1 1 Yes Klebsiella oxytoca KCTC 1686 1 1 Yes Enterobacter aerogenes EA1509E 1 1 Yes Enterobacter cloacae SCF1 1 1 Yes Enterobacter cloacae EcWSU1 1 1 Yes Enterobacter cloacae subsp. cloacae ENHKU01 1 1 Yes Enterobacter cloacae subsp. cloacae NCTC 9394 1 1 Yes Enterobacter cloacae subsp. cloacae ATCC 13047 2 2 Yes Acinetobacter johnsonii SH046 1 1 Yes Candidatus Nitrososphaera gargensis Ga9.2 1 1 Yes Caldisphaera lagunensis DSM 15908 6 6 Yes Sulfolobus islandicus LAL14/1 1 1 Yes Sulfolobus islandicus REY15A 1 1 Yes Sulfolobus islandicus HVE10/4 1 1 Yes Sulfolobus islandicus Y.G.57.14 1 1 Yes Sulfolobus islandicus L.S.2.15 1 1 Yes Sulfolobus islandicus M.16.27 1 1 Yes Sulfolobus islandicus M.14.25 1 1 Yes Sulfolobus islandicus M.16.4 1 1 Yes Sulfolobus islandicus L.D.8.5 1 1 Yes Sulfolobus acidocaldarius SUSAZ 2 1 Yes Sulfolobus acidocaldarius Ron12/I 3 2 Yes Sulfolobus acidocaldarius N8 3 2 Yes Methanomethylovorans hollandica DSM 15978 32 12 Yes Methanolobus psychrophilus R15 24 10 Yes Methanosarcina mazei Tuc01 61 20 Yes Methanoregula formicica Methanoregula formicicum SMSP 51 11 Yes Archaeoglobus sulfaticallidus PM70-1 6 4 Yes Thermococcus sp. AM4 1 1 Yes Thermococcus litoralis DSM 5473 3 1 Yes Pyrococcus furiosus DSM 3638 1 1 Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 6 6 Yes Halovivax ruber XH-70 6 6 Yes Natrinema pellirubrum DSM 15624 2 2 Yes Natronobacterium gregoryi SP2 1 1 Yes Haloquadratum walsbyi C23 2 1 Yes Halorhabdus tiamatea SARL4B 9 5 Yes Natronomonas moolapensis 8.8.11 9 5 Yes Haloarcula hispanica N601 4 4 Yes Methanococcus maripaludis X1 1 1 Yes Methanobacterium sp. SWAN-1 5 4 Yes Homo sapiens 75_37 (old version GRC) Human 112 49 Yes Homo sapiens Human 78 26 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 34 12 Yes Loa loa v3.3 (Request) Eye worm 1 1 Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 2 2 Yes Homo sapiens 69_37 Human 35 13 Yes Pan troglodytes 69_2.1.4 Chimpanzee 16 8 Yes Gorilla gorilla 69_3.1 Western gorilla 30 12 Yes Pongo abelii 69_2 Sumatran orangutan 31 11 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 29 10 Yes Macaca mulatta 69_1 Rhesus monkey 26 11 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 30 9 Yes Otolemur garnettii 69_3 Small-eared galago 33 11 Yes Microcebus murinus 69_1 Gray mouse lemur 26 9 Yes Rattus norvegicus 69_3.4 Norway rat 31 10 Yes Mus musculus 69_38 House mouse 34 12 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 22 9 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 28 11 Yes Cavia porcellus 69_3 Domestic guinea pig 32 11 Yes Oryctolagus cuniculus 69_2 Rabbit 24 11 Yes Ochotona princeps 69 American pika 21 8 Yes Tupaia belangeri 69 Northern tree shrew 19 10 Yes Sus scrofa 69_10.2 Pig 24 8 Yes Bos taurus 69_3.1 Cattle 29 10 Yes Vicugna pacos 69_1 Alpaca 12 6 Yes Tursiops truncatus 69_1 Bottlenose dolphin 29 10 Yes Mustela putorius furo 69_1.0 Domestic ferret 31 11 Yes Ailuropoda melanoleuca 69_1 Giant panda 31 10 Yes Canis familiaris 69_3.1 Dog 30 11 Yes Felis catus 69 Domestic cat 21 9 Yes Equus caballus 69_2 Horse 31 11 Yes Myotis lucifugus 69_2.0 Little brown bat 23 7 Yes Pteropus vampyrus 69_1 Large flying fox 25 10 Yes Sorex araneus 69_1 European shrew 8 5 Yes Erinaceus europaeus 69 Western European hedgehog 22 8 Yes Procavia capensis 69_1 Cape rock hyrax 22 9 Yes Loxodonta africana 69_3 African savanna elephant 29 10 Yes Echinops telfairi 69 Small Madagascar hedgehog 16 8 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 10 5 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 6 Yes Macropus eugenii 69_1.0 Tammar wallaby 22 8 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 28 10 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 29 10 Yes Ornithorhynchus anatinus 69_5 Platypus 18 9 Yes Petromyzon marinus 69_7.0 Sea lamprey 10 5 Yes Meleagris gallopavo 69_2 Turkey 31 11 Yes Gallus gallus 69_2 Chicken 31 10 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 30 9 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 40 11 Yes Anolis carolinensis 69_2.0 Green anole 31 10 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 34 9 Yes Latimeria chalumnae 69_1 Coelacanth 43 12 Yes Gadus morhua 69_1 Atlantic cod 29 14 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 36 15 Yes Takifugu rubripes 69_4 Torafugu 37 15 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 28 13 Yes Oryzias latipes 69_1 Japanese medaka 28 12 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 34 16 Yes Oreochromis niloticus 69_1.0 Nile tilapia 40 15 Yes Danio rerio 69_9 Zebrafish 38 16 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 1 Yes Ciona intestinalis 69 Vase tunicate 13 2 Yes Drosophila melanogaster 69_5 Fruit fly 4 1 Yes 1_050719N (meta-genome) 5 4 Yes 1_Upper_euphotic (meta-genome) 5 4 Yes 2_050719S (meta-genome) 10 7 Yes 2_Base_of_chrolophyll_max (meta-genome) 5 5 Yes 3_050719R (meta-genome) 15 15 Yes 3_Below_base_of_euphotic (meta-genome) 3 3 Yes 4_050719Q (meta-genome) 51 35 Yes 4_Deep_abyss (meta-genome) 11 7 Yes 5_050719P (meta-genome) 34 30 Yes 5_Below_upper_mesopelagic (meta-genome) 8 7 Yes 6_Upper_euphotic (meta-genome) 7 6 Yes 7_Oxygen_minimum_layer (meta-genome) 15 13 Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 3 3 Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 5 5 Yes Air microbial communities Singapore indoor air filters 1 (meta-genome) 3 3 Yes Air microbial communities Singapore indoor air filters 2 (meta-genome) 7 6 Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome) 3 3 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 3 3 Yes Bath Hot Springs, planktonic community (meta-genome) 16 14 Yes Combined (meta-genome) 39 33 Yes Crater Hills (meta-genome) 1 1 Yes Cyphomyrmex longiscapus fungus garden (meta-genome) 15 14 Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 2 2 Yes Dump bottom (Dump bottom) (meta-genome) 141 127 Yes Dump top (Dump top) (meta-genome) 97 81 Yes Endophytic microbiome from Rice (meta-genome) 3 3 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 85 58 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 135 73 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 17 15 Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 54 41 Yes Fungus garden combined (combined) (meta-genome) 13 13 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 12 12 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 19 18 Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 33 20 Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 16 12 Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 19 13 Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 33 20 Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 26 23 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 30 26 Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 38 29 Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 30 22 Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 33 26 Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 33 21 Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 21 16 Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome) 11 10 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 8 7 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome) 8 6 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 14 10 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome) 6 4 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome) 4 4 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 56 43 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 50 34 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 23 16 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 38 32 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome) 4 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 55 36 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome) 6 6 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome) 2 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 26 24 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 73 50 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 42 29 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome) 17 16 Yes Human Gut Community Subject 7 (meta-genome) 1 1 Yes Human Gut Community Subject 8 (meta-genome) 2 2 Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 21 10 Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 28 28 Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 47 43 Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome) 50 19 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 276 220 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 112 80 Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 12 12 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 69 60 Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 62 49 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 22 20 Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 59 53 Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 25 25 Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 1 1 Yes NCBI 2017_08 genome 83460 51834 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 138 107 Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 15 11 Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome) 1 1 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 80 56 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 72 50 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 50 36 Yes Single-cell genome from subgingival tooth surface TM7a (meta-genome) 1 1 Yes Single-cell genome from subgingival tooth surface TM7c (meta-genome) 1 1 Yes Sludge/Australian, Phrap Assembly (meta-genome) 37 20 Yes Sludge/US, Jazz Assembly (meta-genome) 47 22 Yes Sludge/US, Phrap Assembly (meta-genome) 67 28 Yes Soil microbial communities from Minnesota Farm (meta-genome) 234 157 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 234 202 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 189 169 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 101 93 Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 96 89 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 112 106 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 130 113 Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 65 42 Yes STRING v9.0.5 (STRING) 2950 1269 Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 26 25 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 125 112 Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 27 26 Yes Termite Protist Endosymbiont Community (meta-genome) 1 1 Yes Uniprot 2018_03 genome 67501 36235 Yes Uranium Contaminated Groundwater FW106 (meta-genome) 3 3 Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 254 143 Yes Global Ocean Sampling Expedition (GOS) 2871 2141 Yes NCBI plasmid sequences (Plasmids) 102 50 Yes NCBI viral sequences (Viral) 6 6 Yes PDB chains (SCOP 1.75 ) (PDB) 3 3 Yes Protein Data Bank (all PDB sequenc) 41 41 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 70 70 Yes TargetDB 431 139 Yes The Salmonella enterica Pan-genome (meta-genome) 29 29 Yes UniProt 6 6
