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Starch-binding domain family domain assignments
in
all bacterial genomes

Assignment details

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17 selected genomes have 17 significant domains in 17 proteins.


Catenulispora acidiphila DSM 44928 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|256394988|ref|YP_003116552.1|   1.01e-25   0.0000307   642-742   1qho A:577-686  
 
Weak hits:
gi|256393823|ref|YP_003115387.1|   4.66e-33   0.00014   641-737   1kul A:  
  4.17e-22   0.0012   561-637   1kul A:  
gi|256396261|ref|YP_003117825.1|   0.000000515   0.015   1055-1153   1kul A:  
  0.0000204   0.011   924-995   1kul A:  

Herpetosiphon aurantiacus DSM 785 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|159900578|ref|YP_001546825.1|   2.33e-34   0.0001   499-595   1pam A:583-686  
 
Weak hits:
gi|159900207|ref|YP_001546454.1|   0.00000824   0.0091   38-111   1pam A:583-686  
gi|159900848|ref|YP_001547095.1|   0.0000000294   0.0092   1517-1614   1kul A:  

Thermoanaerobacterium xylanolyticum LX-11 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|333896467|ref|YP_004470341.1|   5.64e-34   0.00000124   607-709   1ciu A:579-683  
 
Weak hits:
gi|333896463|ref|YP_004470337.1|   0.00000000000916   0.012   1254-1352   1kul A:  

Thermoanaerobacter mathranii subsp. mathranii str. A3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|297545348|ref|YP_003677650.1|   5.15e-30   0.0000974   653-755   1cyg A:575-680  
 
Weak hits:
gi|297543615|ref|YP_003675917.1|   0.000000000000957   0.0083   1250-1345   1kul A:  

Thermoanaerobacter pseudethanolicus ATCC 33223 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|167037093|ref|YP_001664671.1|   8.34e-29   0.0001   657-751   1cyg A:575-680  
 
Weak hits:
gi|167038553|ref|YP_001666131.1|   0.0000000000245   0.012   1255-1350   1kul A:  

Thermoanaerobacter brockii subsp. finnii Ako-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|320115508|ref|YP_004185667.1|   8.34e-29   0.0001   657-751   1cyg A:575-680  
 
Weak hits:
gi|320116949|ref|YP_004187108.1|   0.0000000000245   0.012   1255-1350   1kul A:  

Streptococcus gallolyticus UCN34 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|288904962|ref|YP_003430184.1|   2.21e-32   0.0000503   605-708   1ciu A:579-683  

Geobacillus sp. WCH70 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|239826234|ref|YP_002948858.1|   2.4e-30   0.000072   667-760   1cyg A:575-680  

Shewanella woodyi ATCC 51908 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|170727753|ref|YP_001761779.1|   1.99e-29   0.0000444   602-697   1ciu A:579-683  

Thermoanaerobacterium saccharolyticum JW/SL-YS485 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|390934447|ref|YP_006391952.1|   2.7e-34   0.00000107   607-709   1ciu A:579-683  
 
Weak hits:
gi|390934443|ref|YP_006391948.1|   0.0000000000242   0.019   1253-1351   1kul A:  

Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|325977930|ref|YP_004287646.1|   2.21e-32   0.0000503   605-708   1ciu A:579-683  

Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386337411|ref|YP_006033580.1|   2.21e-32   0.0000503   605-708   1ciu A:579-683  

Streptococcus suis T15 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|556588100|ref|YP_008755654.1|   1.69e-30   0.0000562   605-702   1cyg A:575-680  

Streptococcus suis ST3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|330832361|ref|YP_004401186.1|   1.37e-30   0.0000582   605-699   1ciu A:579-683  

Paenibacillus sp. Y412MC10 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|261404817|ref|YP_003241058.1|   8.83e-35   0.00000159   610-712   1d3c A:584-686  

Bacillus thuringiensis MC28 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|407702881|ref|YP_006816029.1|   6.62e-16   0.0000768   584-684   1ciu A:579-683  

Bacillus thuringiensis serovar thuringiensis str. IS5056 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|452202489|ref|YP_007482774.1|   4.17e-16   0.0000641   592-693   1ciu A:579-683  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2148 2148
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   2 2
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   2 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   2 2
No Yes Didymella exigua CBS 183.55 v1.0   2 2
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   3 3
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   2 2
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Penicillium chrysogenum Wisconsin 54-1255   3 3
No Yes Penicillium chrysogenum v1.0   3 3
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   3 3
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   4 4
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   5 5
No Yes Penicillium marneffei ATCC 18224   3 3
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   1 1
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   1 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   3 3
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus suis T15   1 1
No Yes Streptococcus suis ST3   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes NCBI 2017_08 genome   554 554
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   40 40
No Yes Uniprot 2018_03 genome   865 865
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   33 33
No Yes Protein Data Bank (all PDB sequenc)   79 79
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   311 311

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