Select to display Genome Domains Proteins No ALL 340976 340976 Yes Homo sapiens 76_38 Human 50 46 Yes Pan troglodytes 76_2.1.4 Chimpanzee 16 12 Yes Gorilla gorilla 76_3.1 Western gorilla 14 14 Yes Pongo abelii 76_2 Sumatran orangutan 15 13 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 15 13 Yes Papio anubis 76 Olive baboon 18 16 Yes Macaca mulatta 76_1 Rhesus monkey 18 18 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 34 28 Yes Otolemur garnettii 76_3 Small-eared galago 16 14 Yes Microcebus murinus 76_1 Gray mouse lemur 13 12 Yes Rattus norvegicus 76_5.0 Norway rat 16 14 Yes Mus musculus 76_38 House mouse 21 19 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 13 12 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 11 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 13 Yes Cavia porcellus 76_3 Domestic guinea pig 15 13 Yes Oryctolagus cuniculus 76_2 Rabbit 21 19 Yes Ochotona princeps 76 American pika 6 5 Yes Tupaia belangeri 76 Northern tree shrew 10 8 Yes Sus scrofa 76_10.2 Pig 16 14 Yes Bos taurus 76_3.1 Cattle 18 17 Yes Ovis aries 76_3.1 Sheep 17 15 Yes Vicugna pacos 76_1 Alpaca 5 3 Yes Tursiops truncatus 76_1 Bottlenose dolphin 15 13 Yes Mustela putorius furo 76_1.0 Domestic ferret 15 13 Yes Ailuropoda melanoleuca 76_1 Giant panda 20 16 Yes Canis familiaris 76_3.1 Dog 19 17 Yes Felis catus 76_6.2 Domestic cat 16 14 Yes Equus caballus 76_2 Horse 22 20 Yes Myotis lucifugus 76_2.0 Little brown bat 14 12 Yes Pteropus vampyrus 76_1 Large flying fox 14 12 Yes Sorex araneus 76_1 European shrew 10 8 Yes Erinaceus europaeus 76 Western European hedgehog 9 7 Yes Procavia capensis 76_1 Cape rock hyrax 14 12 Yes Loxodonta africana 76_3 African savanna elephant 23 19 Yes Echinops telfairi 76 Small Madagascar hedgehog 8 8 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 12 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 7 Yes Macropus eugenii 76_1.0 Tammar wallaby 11 10 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 14 13 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 18 16 Yes Ornithorhynchus anatinus 76_5 Platypus 15 13 Yes Saccoglossus kowalevskii v3.0 16 11 Yes Petromyzon marinus 76_7.0 Sea lamprey 4 4 Yes Meleagris gallopavo 76_2 Turkey 15 14 Yes Gallus gallus 76_4 Chicken 18 16 Yes Anas platyrhynchos 76_1.0 Mallard 14 12 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 14 12 Yes Ficedula albicollis 76_1.0 Collared flycatcher 16 14 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 16 14 Yes Anolis carolinensis 76_2.0 Green anole 13 13 Yes Xenopus laevis African clawed frog 6 6 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 17 16 Yes Latimeria chalumnae 76_1 Coelacanth 14 12 Yes Lepisosteus oculatus 76 Spotted gar 23 20 Yes Gadus morhua 76_1 Atlantic cod 17 15 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 16 14 Yes Takifugu rubripes 76_4 Torafugu 67 65 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 22 20 Yes Oryzias latipes 76_1 Japanese medaka 30 28 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 19 18 Yes Poecilia formosa 76 Amazon molly 21 19 Yes Oreochromis niloticus 76_1.0 Nile tilapia 31 27 Yes Astyanax mexicanus 76 Mexican tetra 22 18 Yes Danio rerio 76_9 Zebrafish 38 32 Yes Oikopleura dioica 5 4 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 15 15 Yes Ciona intestinalis 76 Vase tunicate 4 4 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 10 8 Yes Adineta vaga 17 13 Yes Octopus bimaculoides 280 11 8 Yes Crassostrea gigas 22 Pacific oyster 9 4 Yes Lottia gigantea Owl limpet 5 3 Yes Helobdella robusta 3 3 Yes Capitella sp. I 6 4 Yes Danaus plexippus OGS1.0 Monarch butterfly 6 4 Yes Heliconius melpomene Postman butterfly 6 3 Yes Bombyx mori Domestic silkworm 4 4 Yes Nasonia vitripennis Jewel wasp 2 2 Yes Apis mellifera 38.2d (Not maintained) Honey bee 24 15 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 6 3 Yes Linepithema humile v1.1 Argentine ant 5 2 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 5 2 Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 3 Yes Atta cephalotes v1.1 6 3 Yes Camponotus floridanus v3.3 Florida carpenter ant 6 3 Yes Lucilia cuprina Australian sheep blowfly 5 2 Yes Drosophila grimshawi 1.3 5 2 Yes Drosophila willistoni 1.3 6 3 Yes Drosophila pseudoobscura 2.13 6 3 Yes Drosophila persimilis 1.3 6 3 Yes Drosophila suzukii 4 2 Yes Drosophila yakuba 1.3 5 2 Yes Drosophila simulans 1.3 5 2 Yes Drosophila sechellia 1.3 5 2 Yes Drosophila melanogaster 76_5 Fruit fly 34 16 Yes Drosophila erecta 1.3 6 3 Yes Drosophila ananassae 1.3 5 2 Yes Drosophila virilis 1.2 6 3 Yes Drosophila mojavensis 1.3 5 2 Yes Megaselia scalaris 22 1 1 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1 Yes Culex pipiens quinquefasciatus Southern house mosquito 4 2 Yes Anopheles darlingi 22 American malaria mosquito 5 2 Yes Anopheles gambiae 49_3j African malaria mosquito 5 2 Yes Tribolium castaneum 3.0 Red flour beetle 9 7 Yes Pediculus humanus corporis Human body louse 6 5 Yes Acyrthosiphon pisum Pea aphid 6 4 Yes Rhodnius prolixus 22 8 7 Yes Daphnia pulex Common water flea 10 8 Yes Strigamia maritima 22 8 5 Yes Sarcoptes scabiei 7 6 Yes Tetranychus urticae Two-spotted spider mite 7 5 Yes Ixodes scapularis Black-legged tick 7 7 Yes Pristionchus pacificus 3 3 Yes Meloidogyne hapla 1 1 Yes Onchocerca volvulus 22 4 3 Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3 Yes Caenorhabditis japonica 3 3 Yes Caenorhabditis brenneri 3 3 Yes Caenorhabditis remanei 3 3 Yes Caenorhabditis elegans 76_235 Roundworm 5 5 Yes Caenorhabditis briggsae 2 3 3 Yes Trichinella spiralis 22 3 3 Yes Hymenolepis microstoma 1 1 Yes Echinococcus multilocularis 1 1 Yes Echinococcus granulosus 1 1 Yes Taenia solium Pork tapeworm 2 2 Yes Schistosoma mansoni 6 3 Yes Mnemiopsis leidyi Sea walnut 3 3 Yes Thelohanellus kitauei 2 2 Yes Acropora digitifera v1.0 9 6 Yes Nematostella vectensis 1.0 Starlet sea anemone 11 9 Yes Hydra vulgaris 6 4 Yes Amphimedon queenslandica 3 2 Yes Trichoplax adhaerens 8 8 Yes Proterospongia sp. ATCC 50818 4 2 Yes Monosiga brevicollis 6 5 Yes Sphaeroforma arctica JP610 19 12 Yes Capsaspora owczarzaki ATCC 30864 4 1 Yes Zasmidium cellare ATCC 36951 v1.0 1 1 Yes Dictyostelium discoideum 1 1 Yes Dictyostelium purpureum 2 2 Yes Selaginella moellendorffii 8 6 Yes Picea abies Norway spruce 1 1 Yes Eucalyptus grandis v201 Rose gum 3 3 Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2 Yes Gossypium raimondii v221 5 5 Yes Citrus clementina v165 2 2 Yes Citrus sinensis v154 Sweet orange 5 5 Yes Thellungiella halophila v173 2 2 Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2 Yes Capsella rubella v183 2 2 Yes Arabidopsis lyrata Lyrate rockcress 1 1 Yes Arabidopsis thaliana 10 Thale cress 2 2 Yes Carica papaya Papaya 2 2 Yes Medicago truncatula Barrel medic 2 2 Yes Phaseolus vulgaris v186 French bean 3 3 Yes Glycine max v109 Soybean 4 4 Yes Cucumis sativus v122 Cucumber 3 3 Yes Fragaria vesca Wild strawberry 2 2 Yes Malus domestica v196 Apple 3 3 Yes Prunus persica v139 Peach 2 2 Yes Linum usitatissimum v200 Flax 2 2 Yes Manihot esculenta v147 Cassava 2 2 Yes Populus trichocarpa v156 Black cottonwood 4 3 Yes Vitis vinifera Wine grape 1 1 Yes Mimulus guttatus v140 Spotted monkey flower 2 2 Yes Solanum lycopersicum v.2.3 Tomato 2 2 Yes Actinidia chinensis Hongyang 2 1 Yes Aquilegia coerulea v195 6 6 Yes Triticum aestivum 22 Bread wheat 4 4 Yes Aegilops tauschii 22 1 1 Yes Brachypodium distachyon Stiff brome 1 1 Yes Oryza barthii 22 African wild rice 2 2 Yes Oryza meridionalis 22 1 1 Yes Oryza glumaepatula 22 2 2 Yes Oryza glaberrima African rice 2 2 Yes Oryza punctata 22 3 3 Yes Oryza nivara 22 2 2 Yes Oryza brachyantha 22 Malo sina 2 2 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1 Yes Oryza sativa v193 Rice 1 1 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 4 4 Yes Panicum virgatum v202 Switchgrass 4 4 Yes Setaria italica v164 Foxtail millet 3 3 Yes Zea mays subsp. mays Maize 5 5 Yes Zea mays v181 Maize 5 5 Yes Sorghum bicolor Sorghum 3 3 Yes Musa balbisiana Balbis banana 1 1 Yes Musa acuminata 22 Wild Malaysian banana 2 2 Yes Amborella trichopoda 22 2 2 Yes Physcomitrella patens 4 4 Yes Coccomyxa subellipsoidea sp. C-169 v2 1 1 Yes Asterochloris sp. Cgr/DA1pho v1.0 1 1 Yes Chlorella vulgaris 1 1 Yes Micromonas sp. RCC299 1 1 Yes Thecamonas trahens ATCC 50062 1 1 Yes Cyanophora paradoxa 2 2 Yes Trypanosoma cruzi strain CL Brener 1 1 Yes Paramecium tetraurelia 3 3 Yes Ichthyophthirius multifiliis strain G5 1 1 Yes Symbiodinium minutum clade B1 v1.2 2 2 Yes Naegleria gruberi 4 4 Yes Trichomonas vaginalis 2 2 Yes Guillardia theta CCMP2712 v1.0 2 2 Yes Emiliania huxleyi CCMP1516 3 1 No Thermobaculum terrenum ATCC BAA-798 4 4 No Leptolyngbya sp. PCC 7376 3 2 No Thermosynechococcus sp. NK55 1 1 No Thermosynechococcus elongatus BP-1 1 1 No Synechococcus sp. PCC 6312 1 1 No Trichodesmium erythraeum IMS101 2 2 No Halothece sp. PCC 7418 1 1 No Gloeobacter violaceus PCC 7421 7 7 No Rivularia sp. PCC 7116 2 2 No Calothrix sp. PCC 7507 2 1 No Nostoc punctiforme PCC 73102 2 2 No Nostoc sp. PCC 7524 1 1 No Anabaena sp. 90 2 2 No Conexibacter woesei DSM 14684 1 1 No Ilumatobacter coccineus 2 2 No Nakamurella multipartita DSM 44233 4 3 No Kineococcus radiotolerans SRS30216 3 3 No Catenulispora acidiphila DSM 44928 4 2 No Stackebrandtia nassauensis DSM 44728 3 2 No Thermobifida fusca YX 1 1 No Streptosporangium roseum DSM 43021 1 1 No Streptomyces coelicolor A3(2) 7 6 No Streptomyces sp. PAMC26508 4 3 No Streptomyces flavogriseus ATCC 33331 4 3 No Streptomyces sp. SirexAA-E 4 3 No Streptomyces griseus subsp. griseus NBRC 13350 5 4 No Streptomyces bingchenggensis BCW-1 8 5 No Streptomyces violaceusniger Tu 4113 8 5 No Streptomyces avermitilis MA-4680 7 6 No Streptomyces cattleya NRRL 8057 = DSM 46488 10 5 No Streptomyces scabiei 87.22 3 2 No Streptomyces hygroscopicus subsp. jinggangensis 5008 13 10 No Actinosynnema mirum DSM 43827 4 3 No Saccharomonospora viridis DSM 43017 1 1 No Pseudonocardia dioxanivorans CB1190 9 7 No Saccharopolyspora erythraea NRRL 2338 2 1 No Amycolatopsis mediterranei U32 4 2 No Kribbella flavida DSM 17836 4 2 No Nocardioides sp. JS614 2 2 No Propionibacterium propionicum F0230a 1 1 No Microlunatus phosphovorus NM-1 5 5 No Salinispora arenicola CNS-205 2 2 No Salinispora tropica CNB-440 3 3 No Verrucosispora maris AB-18-032 4 2 No Micromonospora sp. L5 7 4 No Micromonospora aurantiaca ATCC 27029 7 4 No Actinoplanes sp. N902-109 11 5 No Actinoplanes missouriensis 431 1 1 No Segniliparus rotundus DSM 44985 1 1 No Tsukamurella paurometabola DSM 20162 1 1 No Gordonia sp. KTR9 1 1 No Gordonia polyisoprenivorans VH2 3 3 No Gordonia bronchialis DSM 43247 2 2 No Rhodococcus equi 103S 1 1 No Rhodococcus opacus B4 1 1 No Rhodococcus erythropolis PR4 1 1 No Nocardia cyriacigeorgica GUH-2 2 2 No Nocardia farcinica IFM 10152 1 1 No Amycolicicoccus subflavus DQS3-9A1 1 1 No Mycobacterium sp. JLS 1 1 No Mycobacterium intracellulare ATCC 13950 1 1 No Mycobacterium avium 104 1 1 No Mycobacterium vanbaalenii PYR-1 1 1 No Mycobacterium canettii CIPT 140010059 1 1 No Mycobacterium africanum GM041182 2 2 No Mycobacterium tuberculosis KZN 1435 2 2 No Mycobacterium tuberculosis 2 2 No Mycobacterium bovis BCG str. Pasteur 1173P2 1 1 No Mycobacterium rhodesiae NBB3 1 1 No Mycobacterium gilvum PYR-GCK 1 1 No Mycobacterium chubuense NBB4 1 1 No Mycobacterium smegmatis str. MC2 155 1 1 No Mycobacterium leprae Br4923 1 1 No Corynebacterium efficiens YS-314 2 1 No Sanguibacter keddieii DSM 10542 6 4 No Beutenbergia cavernae DSM 12333 5 2 No Microbacterium testaceum StLB037 1 1 No Intrasporangium calvum DSM 43043 1 1 No Cellulomonas fimi ATCC 484 3 2 No [Cellvibrio] gilvus ATCC 13127 1 1 No Arthrobacter phenanthrenivorans Sphe3 1 1 No Arthrobacter chlorophenolicus A6 2 2 No Arthrobacter aurescens TC1 2 2 No Arthrobacter sp. Rue61a 2 2 No Arthrobacter sp. FB24 2 2 No Renibacterium salmoninarum ATCC 33209 2 1 No Dehalogenimonas lykanthroporepellens BL-DC-9 1 1 No Anaerolinea thermophila UNI-1 2 2 No Thermomicrobium roseum DSM 5159 2 1 No Sphaerobacter thermophilus DSM 20745 2 1 No Herpetosiphon aurantiacus DSM 785 16 9 No Roseiflexus sp. RS-1 7 5 No Roseiflexus castenholzii DSM 13941 6 4 No Chloroflexus sp. MS-G 5 3 No Chloroflexus sp. Y-400-fl 7 4 No Chloroflexus aggregans DSM 9485 6 3 No Chloroflexus aurantiacus J-10-fl 7 4 No Truepera radiovictrix DSM 17093 1 1 No Deinococcus gobiensis I-0 1 1 No Deinococcus deserti VCD115 2 2 No Deinococcus maricopensis DSM 21211 2 2 No Deinococcus geothermalis DSM 11300 2 2 No Deinococcus proteolyticus MRP 1 1 No Oceanithermus profundus DSM 14977 3 3 No Meiothermus silvanus DSM 9946 1 1 No Meiothermus ruber DSM 1279 1 1 No Thermus sp. CCB_US3_UF1 1 1 No Natranaerobius thermophilus JW/NM-WN-LF 4 3 No Symbiobacterium thermophilum IAM 14863 12 3 No Clostridium clariflavum DSM 19732 7 7 No Clostridium thermocellum ATCC 27405 4 4 No Ethanoligenens harbinense YUAN-3 2 2 No Oscillibacter valericigenes Sjm18-20 3 2 No Thermincola potens JR 2 2 No Desulfosporosinus acidiphilus SJ4 7 6 No Desulfosporosinus orientis DSM 765 4 4 No Desulfitobacterium hafniense Y51 2 2 No Desulfitobacterium dehalogenans ATCC 51507 5 3 No Desulfotomaculum reducens MI-1 2 2 No Desulfotomaculum acetoxidans DSM 771 3 3 No Desulfotomaculum kuznetsovii DSM 6115 2 2 No Desulfotomaculum carboxydivorans CO-1-SRB 3 1 No Eubacterium limosum KIST612 1 1 No Clostridium saccharolyticum WM1 2 2 No Clostridium lentocellum DSM 5427 1 1 No Coprococcus sp. ART55/1 1 1 No Roseburia hominis A2-183 2 1 No Butyrivibrio proteoclasticus B316 1 1 No Syntrophothermus lipocalidus DSM 12680 1 1 No Syntrophomonas wolfei subsp. wolfei str. Goettingen 1 1 No Clostridium ljungdahlii DSM 13528 2 2 No Clostridium kluyveri DSM 555 2 2 No Clostridium perfringens ATCC 13124 1 1 No Clostridium cellulovorans 743B 2 2 No Clostridium botulinum A str. ATCC 3502 1 1 No Clostridium acetobutylicum ATCC 824 3 2 No Caldicellulosiruptor kronotskyensis 2002 1 1 No Caldicellulosiruptor bescii DSM 6725 1 1 No Thermodesulfobium narugense DSM 14796 3 2 No Halothermothrix orenii H 168 4 3 No Halanaerobium hydrogeniformans 1 1 No Brevibacillus brevis NBRC 100599 9 2 No Paenibacillus sp. JDR-2 2 2 No Paenibacillus terrae HPL-003 4 3 No Paenibacillus mucilaginosus 3016 4 4 No Paenibacillus polymyxa M1 5 3 No Solibacillus silvestris StLB046 2 1 No Oceanobacillus iheyensis HTE831 2 1 No Bacillus sp. JS 2 1 No Bacillus amyloliquefaciens FZB42 2 1 No Bacillus atrophaeus 1942 2 1 No Bacillus subtilis subsp. subtilis str. 168 3 2 No Bacillus licheniformis DSM 13 = ATCC 14580 2 1 No Bacillus thuringiensis str. Al Hakam 1 1 No Bacillus pseudofirmus OF4 2 1 No Bacillus cellulosilyticus DSM 2522 1 1 No Bacillus pumilus SAFR-032 2 1 No Candidatus Cloacamonas acidaminovorans 13 8 No Gemmatimonas aurantiaca T-27 42 41 No Melioribacter roseus P3M 34 30 No Ignavibacterium album JCM 16511 24 24 No Pelodictyon phaeoclathratiforme BU-1 1 1 No Chlorobium luteolum DSM 273 1 1 No Chlorobium phaeobacteroides DSM 266 1 1 No Chlorobium phaeovibrioides DSM 265 2 2 No Chlorobium limicola DSM 245 4 4 No Chlorobaculum parvum NCIB 8327 1 1 No Chlorobium tepidum TLS 1 1 No Chloroherpeton thalassium ATCC 35110 21 21 No Prosthecochloris aestuarii DSM 271 4 4 No Haliscomenobacter hydrossis DSM 1100 105 105 No Saprospira grandis str. Lewin 30 29 No Niastella koreensis GR20-10 196 192 No Chitinophaga pinensis DSM 2588 174 174 No Salinibacter ruber M8 29 27 No Rhodothermus marinus DSM 4252 24 24 No Flexibacter litoralis DSM 6794 37 36 No Candidatus Amoebophilus asiaticus 5a2 1 1 No Belliella baltica DSM 15883 34 34 No Cyclobacterium marinum DSM 745 101 101 No Marivirga tractuosa DSM 4126 53 53 No Fibrella aestuarina 109 108 No Leadbetterella byssophila DSM 17132 69 69 No Dyadobacter fermentans DSM 18053 154 154 No Cytophaga hutchinsonii ATCC 33406 15 15 No Spirosoma linguale DSM 74 133 133 No Runella slithyformis DSM 19594 100 100 No Parabacteroides distasonis ATCC 8503 88 88 No Tannerella forsythia ATCC 43037 69 69 No Paludibacter propionicigenes WB4 53 53 No Odoribacter splanchnicus DSM 20712 87 86 No Bacteroides sp. CF50 37 37 No Prevotella melaninogenica ATCC 25845 43 43 No Prevotella intermedia 17 19 19 No Prevotella denticola F0289 39 39 No Prevotella ruminicola 23 49 49 No Porphyromonas asaccharolytica DSM 20707 18 18 No Porphyromonas gingivalis ATCC 33277 15 15 No Alistipes finegoldii DSM 17242 43 42 No Bacteroides salanitronis DSM 18170 45 45 No Bacteroides helcogenes P 36-108 66 66 No Bacteroides vulgatus ATCC 8482 101 101 No Bacteroides thetaiotaomicron VPI-5482 127 127 No Bacteroides fragilis YCH46 99 98 No Pedobacter saltans DSM 12145 81 81 No Solitalea canadensis DSM 3403 90 89 No Pedobacter heparinus DSM 2366 128 128 No Sphingobacterium sp. 21 160 159 No Fluviicola taffensis DSM 16823 24 24 No Owenweeksia hongkongensis DSM 17368 44 44 No Zunongwangia profunda SM-A87 106 106 No Krokinobacter sp. 4H-3-7-5 45 44 No Gramella forsetii KT0803 48 48 No Lacinutrix sp. 5H-3-7-4 41 41 No Maribacter sp. HTCC2170 42 42 No Robiginitalea biformata HTCC2501 32 32 No Croceibacter atlanticus HTCC2559 38 38 No Aequorivita sublithincola DSM 14238 35 34 No Zobellia galactanivorans 123 123 No Muricauda ruestringensis DSM 13258 57 57 No Cellulophaga algicola DSM 14237 75 75 No Cellulophaga lytica DSM 7489 75 75 No Flavobacteriaceae bacterium 3519-10 10 10 No Polaribacter sp. MED152 40 40 No Riemerella anatipestifer ATCC 11845 = DSM 15868 9 9 No Ornithobacterium rhinotracheale DSM 15997 20 20 No Capnocytophaga canimorsus Cc5 28 28 No Capnocytophaga ochracea DSM 7271 38 38 No Weeksella virosa DSM 16922 17 17 No Flavobacterium indicum GPTSA100-9 28 28 No Flavobacterium psychrophilum JIP02/86 29 29 No Flavobacterium branchiophilum FL-15 31 31 No Flavobacterium columnare ATCC 49512 21 21 No Flavobacterium johnsoniae UW101 97 97 No Fibrobacter succinogenes subsp. succinogenes S85 8 8 No Isosphaera pallida ATCC 43644 7 7 No Planctomyces brasiliensis DSM 5305 9 9 No Planctomyces limnophilus DSM 3776 6 6 No Rhodopirellula baltica SH 1 7 5 No Pirellula staleyi DSM 6068 6 6 No Coraliomargarita akajimensis DSM 45221 2 2 No Opitutus terrae PB90-1 4 4 No Turneriella parva DSM 21527 8 8 No Leptospira borgpetersenii serovar Hardjo-bovis str. L550 2 2 No Leptospira interrogans serovar Lai str. IPAV 3 3 No Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 3 3 No Treponema azotonutricium ZAS-9 1 1 No Treponema primitia ZAS-2 2 2 No Treponema brennaborense DSM 12168 1 1 No Treponema denticola ATCC 35405 2 2 No Spirochaeta africana DSM 8902 2 2 No Thermodesulfatator indicus DSM 15286 1 1 No Desulfurispirillum indicum S5 1 1 No Deferribacter desulfuricans SSM1 1 1 No Flexistipes sinusarabici DSM 4947 1 1 No Marinitoga piezophila KA3 1 1 No Mesotoga prima MesG1.Ag.4.2 1 1 No Thermotoga lettingae TMO 4 4 No Thermotoga thermarum DSM 5069 1 1 No Persephonella marina EX-H1 1 1 No Dictyoglomus thermophilum H-6-12 2 2 No Caldisericum exile AZM16c01 2 2 No Candidatus Chloracidobacterium thermophilum B 17 17 No Candidatus Solibacter usitatus Ellin6076 117 116 No Granulicella tundricola MP5ACTX9 59 54 No Granulicella mallensis MP5ACTX8 95 95 No Candidatus Koribacter versatilis Ellin345 41 40 No Terriglobus saanensis SP1PR4 64 64 No Terriglobus roseus DSM 18391 63 63 No Acidobacterium capsulatum ATCC 51196 35 35 No Candidatus Nitrospira defluvii 4 4 No Ilyobacter polytropus DSM 2926 2 2 No Fusobacterium nucleatum subsp. nucleatum ATCC 25586 2 2 No Bacteriovorax marinus SJ 1 1 No Nautilia profundicola AmH 1 1 No Nitratifractor salsuginis DSM 16511 2 2 No Desulfarculus baarsii DSM 2075 4 3 No Desulfobacca acetoxidans DSM 11109 3 3 No Desulfomonile tiedjei DSM 6799 1 1 No Syntrophobacter fumaroxidans MPOB 3 3 No Desulfurivibrio alkaliphilus AHT2 3 3 No Desulfobulbus propionicus DSM 2032 1 1 No Desulfatibacillum alkenivorans AK-01 9 9 No Desulfococcus oleovorans Hxd3 4 4 No Desulfovibrio aespoeensis Aspo-2 1 1 No Lawsonia intracellularis PHE/MN1-00 1 1 No Desulfovibrio alaskensis G20 2 2 No Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 1 1 No Geobacter daltonii FRC-32 10 7 No Geobacter uraniireducens Rf4 9 6 No Geobacter lovleyi SZ 2 2 No Geobacter sulfurreducens KN400 3 2 No Geobacter metallireducens GS-15 5 4 No Pelobacter propionicus DSM 2379 1 1 No Pelobacter carbinolicus DSM 2380 1 1 No Haliangium ochraceum DSM 14365 18 13 No Sorangium cellulosum 'So ce 56' 18 13 No Anaeromyxobacter sp. Fw109-5 6 5 No Anaeromyxobacter dehalogenans 2CP-1 7 5 No Stigmatella aurantiaca DW4/3-1 23 17 No Corallococcus coralloides DSM 2259 48 23 No Myxococcus xanthus DK 1622 25 17 No Myxococcus fulvus HW-1 19 13 No Dechloromonas aromatica RCB 1 1 No Azoarcus sp. BH72 1 1 No Aromatoleum aromaticum EbN1 2 2 No Pseudogulbenkiania sp. NH8B 1 1 No Burkholderia phytofirmans PsJN 1 1 No Burkholderia xenovorans LB400 2 2 No Ralstonia eutropha JMP134 3 3 No Cupriavidus taiwanensis LMG 19424 1 1 No Cupriavidus necator N-1 1 1 No Ralstonia eutropha H16 2 2 No Burkholderia thailandensis E264 3 3 No Burkholderia pseudomallei 1106a 1 1 No Burkholderia mallei SAVP1 2 2 No Burkholderia multivorans ATCC 17616 1 1 No Burkholderia vietnamiensis G4 3 3 No Verminephrobacter eiseniae EF01-2 1 1 No Acidovorax avenae subsp. avenae ATCC 19860 1 1 No Collimonas fungivorans Ter331 1 1 No Janthinobacterium sp. Marseille 1 1 No Herbaspirillum seropedicae SmR1 1 1 No Achromobacter xylosoxidans A8 1 1 No Nitrosospira multiformis ATCC 25196 2 2 No Nitrosomonas sp. Is79A3 1 1 No Methylotenera mobilis JLW8 1 1 No Methylobacillus flagellatus KT 1 1 No Parvularcula bermudensis HTCC2503 1 1 No Caulobacter sp. K31 1 1 No Caulobacter crescentus NA1000 1 1 No Caulobacter segnis ATCC 21756 1 1 No Phenylobacterium zucineum HLK1 1 1 No Erythrobacter litoralis HTCC2594 2 2 No Sphingopyxis alaskensis RB2256 1 1 No Sphingomonas wittichii RW1 1 1 No Zymomonas mobilis subsp. mobilis NCIMB 11163 1 1 No Maricaulis maris MCS10 2 2 No Hirschia baltica ATCC 49814 1 1 No Hyphomonas neptunium ATCC 15444 3 3 No Paracoccus denitrificans PD1222 1 1 No Rhodospirillum centenum SW 1 1 No Sinorhizobium meliloti AK83 1 1 No Saccharophagus degradans 2-40 4 4 No Teredinibacter turnerae T7901 4 3 No Cellvibrio japonicus Ueda107 6 5 No Vibrio sp. Ex25 1 1 No Vibrio harveyi ATCC BAA-1116 1 1 No Vibrio splendidus LGP32 1 1 No Psychromonas ingrahamii 37 5 2 No Idiomarina loihiensis L2TR 1 1 No Ferrimonas balearica DSM 9799 1 1 No Shewanella piezotolerans WP3 4 4 No Shewanella loihica PV-4 4 2 No Shewanella oneidensis MR-1 1 1 No Shewanella baltica OS185 1 1 No Shewanella woodyi ATCC 51908 2 2 No Shewanella sp. MR-4 1 1 No Shewanella frigidimarina NCIMB 400 1 1 No Colwellia psychrerythraea 34H 5 5 No Pseudoalteromonas sp. SM9913 2 2 No Pseudoalteromonas atlantica T6c 1 1 No Pseudoalteromonas haloplanktis TAC125 3 3 No Glaciecola sp. 4H-3-7+YE-5 1 1 No Marinobacter adhaerens HP15 1 1 No Alteromonas sp. SN2 5 5 No Alteromonas macleodii str. 'Deep ecotype' 1 1 No Kangiella koreensis DSM 16069 1 1 No Alcanivorax borkumensis SK2 1 1 No Marinomonas mediterranea MMB-1 1 1 No Chromohalobacter salexigens DSM 3043 1 1 No Rhodanobacter denitrificans 1 1 No Pseudoxanthomonas spadix BD-a59 1 1 No Pseudoxanthomonas suwonensis 11-1 2 2 No Stenotrophomonas maltophilia K279a 1 1 No Xanthomonas axonopodis pv. citri str. 306 2 2 No Xanthomonas albilineans GPE PC73 2 2 No Xanthomonas oryzae pv. oryzae PXO99A 2 2 No Xanthomonas campestris pv. campestris str. B100 2 2 No Nitrosococcus halophilus Nc4 2 2 No Nitrosococcus oceani ATCC 19707 1 1 No gamma proteobacterium HdN1 2 2 No Edwardsiella ictaluri 93-146 1 1 No Serratia sp. AS12 1 1 No Serratia plymuthica AS9 1 1 No Shigella sonnei Ss046 1 1 No Shigella flexneri 5 str. 8401 2 2 No Shigella dysenteriae Sd197 2 2 No Shigella boydii CDC 3083-94 3 3 No Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 1 1 No Klebsiella oxytoca E718 1 1 No Klebsiella variicola At-22 1 1 No Klebsiella pneumoniae NTUH-K2044 1 1 No Enterobacter aerogenes KCTC 2190 2 2 No Escherichia fergusonii ATCC 35469 1 1 No Escherichia coli 'BL21-Gold(DE3)pLysS AG' 1 1 No Enterobacter cloacae subsp. dissolvens SDM 1 1 No Citrobacter rodentium ICC168 1 1 No Candidatus Caldiarchaeum subterraneum 4 3 No Cenarchaeum symbiosum A 1 1 No Nitrosopumilus maritimus SCM1 1 1 No Candidatus Korarchaeum cryptofilum OPF8 1 1 No Fervidicoccus fontis Kam940 1 1 No Pyrolobus fumarii 1A 7 3 No Hyperthermus butylicus DSM 5456 1 1 No Ignisphaera aggregans DSM 17230 2 2 No Aeropyrum pernix K1 1 1 No Ignicoccus hospitalis KIN4/I 3 1 No Metallosphaera cuprina Ar-4 1 1 No Metallosphaera sedula DSM 5348 1 1 No Acidianus hospitalis W1 2 2 No Sulfolobus tokodaii str. 7 3 3 No Sulfolobus islandicus Y.N.15.51 1 1 No Sulfolobus solfataricus P2 1 1 No Sulfolobus acidocaldarius DSM 639 3 3 No Thermofilum sp. 1910b 6 6 No Thermofilum pendens Hrk 5 6 5 No Vulcanisaeta moutnovskia 768-28 1 1 No Vulcanisaeta distributa DSM 14429 1 1 No Pyrobaculum calidifontis JCM 11548 1 1 No halophilic archaeon DL31 2 2 No Methanocella arvoryzae MRE50 30 28 No Methanocella conradii HZ254 18 14 No Methanocella paludicola SANAE 26 24 No Methanosaeta harundinacea 6Ac 3 2 No Methanosaeta thermophila PT 1 1 No Methanosaeta concilii GP6 1 1 No Methanosalsum zhilinae DSM 4017 2 2 No Methanohalobium evestigatum Z-7303 2 2 No Methanococcoides burtonii DSM 6242 2 2 No Methanosarcina acetivorans C2A 7 7 No Methanosarcina mazei Go1 7 7 No Methanosarcina barkeri str. Fusaro 8 7 No Methanohalophilus mahii DSM 5219 2 2 No Methanosphaerula palustris E1-9c 11 5 No Methanoregula boonei 6A8 3 1 No Methanospirillum hungatei JF-1 1 1 No Methanocorpusculum labreanum Z 4 2 No Methanoplanus petrolearius DSM 11571 7 5 No Methanoculleus bourgensis MS2 1 1 No Methanoculleus marisnigri JR1 3 3 No Ferroglobus placidus DSM 10642 1 1 No Archaeoglobus veneficus SNP6 2 2 No Archaeoglobus fulgidus DSM 4304 2 2 No Thermococcus sp. 4557 2 2 No Thermococcus kodakarensis KOD1 2 2 No Thermococcus gammatolerans EJ3 4 4 No Thermococcus sibiricus MM 739 1 1 No Thermococcus barophilus MP 2 2 No Pyrococcus sp. ST04 2 2 No Pyrococcus yayanosii CH1 3 3 No Pyrococcus horikoshii OT3 2 2 No Pyrococcus abyssi GE5 1 1 No Pyrococcus furiosus COM1 1 1 No Thermoplasmatales archaeon BRNA1 2 2 No Thermoplasma volcanium GSS1 5 3 No Thermoplasma acidophilum DSM 1728 6 3 No Picrophilus torridus DSM 9790 1 1 No Salinarchaeum sp. Harcht-Bsk1 2 2 No Halopiger xanaduensis SH-6 2 2 No Haloterrigena turkmenica DSM 5511 4 2 No Natrinema sp. J7-2 2 1 No Natrialba magadii ATCC 43099 5 5 No Halorubrum lacusprofundi ATCC 49239 2 2 No Haloquadratum walsbyi DSM 16790 1 1 No Halogeometricum borinquense DSM 11551 3 3 No Haloferax mediterranei ATCC 33500 1 1 No Halomicrobium mukohataei DSM 12286 1 1 No Halorhabdus utahensis DSM 12940 1 1 No Natronomonas pharaonis DSM 2160 5 3 No Haloarcula hispanica ATCC 33960 3 2 No Halalkalicoccus jeotgali B3 3 3 No Halobacterium salinarum R1 1 1 No Halobacterium sp. NRC-1 1 1 No Methanotorris igneus Kol 5 2 2 No Methanocaldococcus fervens AG86 1 1 No Methanocaldococcus vulcanius M7 1 1 No Methanothermus fervidus DSM 2088 1 1 No Methanothermobacter marburgensis str. Marburg 8 5 No Methanothermobacter thermautotrophicus str. Delta H 2 2 No Methanosphaera stadtmanae DSM 3091 24 6 No Methanobrevibacter sp. AbM4 2 2 No Methanobrevibacter ruminantium M1 3 3 No Methanobrevibacter smithii ATCC 35061 6 6 No Complete genome sequence of Methanobacterium sp. Mb1 3 3 No Aciduliprofundum sp. MAR08-339 6 3 No Aciduliprofundum boonei T469 4 2 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 25 24 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 32 14 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 6 3 Yes Ascaris suum Victoria/Ghent Pig roundworm 4 4 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2 Yes Hordeum vulgare 22 Domesticated barley 3 3 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5 No Chamaesiphon minutus PCC 6605 1 1 No Dactylococcopsis salina PCC 8305 1 1 No Synechococcus sp. JA-2-3B'a(2-13) 1 1 No Synechococcus sp. JA-3-3Ab 1 1 No Prochlorococcus marinus str. MIT 9301 1 1 No Oscillatoria nigro-viridis PCC 7112 2 2 No Cyanothece sp. PCC 7424 1 1 No Cyanothece sp. PCC 8801 1 1 No Gloeobacter kilaueensis Gloeobacter sp. JS 8 8 No Calothrix parietina Calothrix sp. PCC 6303 3 3 No Cylindrospermum stagnale PCC 7417 1 1 No Anabaena cylindrica PCC 7122 1 1 No Streptomyces albus J1074 5 4 No Streptomyces rapamycinicus NRRL 5491 8 6 No Streptomyces davawensis JCM 4913 7 6 No Streptomyces fulvissimus DSM 40593 3 2 No Streptomyces venezuelae ATCC 10712 3 3 No Streptomyces collinus Tu 365 4 3 No Streptomyces cattleya NRRL 8057 = DSM 46488 10 5 No Streptomyces hygroscopicus subsp. jinggangensis TL01 13 10 No Saccharothrix espanaensis DSM 44229 1 1 No Amycolatopsis mediterranei RB 4 2 No Amycolatopsis mediterranei S699 4 2 No Amycolatopsis mediterranei S699 4 2 No Amycolatopsis orientalis HCCB10007 2 2 No Actinoplanes friuliensis DSM 7358 6 3 No Rhodococcus pyridinivorans SB3094 1 1 No Rhodococcus erythropolis CCM2595 1 1 No Nocardia brasiliensis ATCC 700358 4 3 No Mycobacterium sp. MOTT36Y 1 1 No Mycobacterium sp. JDM601 1 1 No Mycobacterium sp. KMS 1 1 No Mycobacterium sp. MCS 1 1 No Mycobacterium yongonense 05-1390 1 1 No Mycobacterium intracellulare MOTT-64 1 1 No Mycobacterium indicus pranii MTCC 9506 1 1 No Mycobacterium intracellulare MOTT-02 1 1 No Mycobacterium avium subsp. paratuberculosis MAP4 1 1 No Mycobacterium avium subsp. paratuberculosis K-10 1 1 No Mycobacterium canettii CIPT 140070017 2 2 No Mycobacterium canettii CIPT 140060008 1 1 No Mycobacterium canettii CIPT 140070008 1 1 No Mycobacterium canettii CIPT 140070010 2 2 No Mycobacterium tuberculosis EAI5/NITR206 2 2 No Mycobacterium tuberculosis EAI5 2 2 No Mycobacterium tuberculosis CAS/NITR204 2 2 No Mycobacterium tuberculosis str. Beijing/NITR203 2 2 No Mycobacterium tuberculosis RGTB423 2 2 No Mycobacterium tuberculosis RGTB327 2 2 No Mycobacterium tuberculosis CTRI-2 2 2 No Mycobacterium tuberculosis str. Erdman = ATCC 35801 1 1 No Mycobacterium tuberculosis KZN 605 2 2 No Mycobacterium tuberculosis KZN 4207 2 2 No Mycobacterium tuberculosis CCDC5079 2 2 No Mycobacterium tuberculosis CCDC5079 2 2 No Mycobacterium tuberculosis H37Ra 2 2 No Mycobacterium tuberculosis str. Haarlem/NITR202 2 2 No Mycobacterium tuberculosis str. Haarlem 2 2 No Mycobacterium tuberculosis F11 2 2 No Mycobacterium tuberculosis H37Rv 2 2 No Mycobacterium tuberculosis CDC1551 2 2 No Mycobacterium bovis AF2122/97 1 1 No Mycobacterium bovis BCG str. Korea 1168P 1 1 No Mycobacterium bovis BCG str. Mexico 1 1 No Mycobacterium bovis BCG str. Tokyo 172 1 1 No Mycobacterium gilvum Spyr1 1 1 No Mycobacterium smegmatis str. MC2 155 1 1 No Mycobacterium leprae TN 1 1 No Mycobacterium kansasii ATCC 12478 1 1 No Clavibacter michiganensis subsp. sepedonicus 3 2 No Bifidobacterium longum NCC2705 1 1 No Bifidobacterium longum DJO10A 1 1 No Bifidobacterium longum subsp. infantis 157F 1 1 No Bifidobacterium longum subsp. longum KACC 91563 1 1 No Bifidobacterium longum subsp. longum BBMN68 1 1 No Bifidobacterium longum subsp. longum JCM 1217 1 1 No Chthonomonas calidirosea T49 9 5 No Deinococcus peraridilitoris DSM 19664 2 2 No Thermus oshimai JL-2 1 1 No Thermus thermophilus HB8 2 2 No Clostridium thermocellum DSM 1313 6 5 No [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532 1 1 No Clostridium acidurici 9a 1 1 No Desulfosporosinus meridiei DSM 13257 2 2 No Desulfitobacterium dichloroeliminans LMG P-21439 1 1 No Desulfitobacterium hafniense DCB-2 2 2 No Roseburia intestinalis XB6B4 1 1 No Clostridium saccharobutylicum DSM 13864 1 1 No Clostridium autoethanogenum DSM 10061 4 4 No Clostridium kluyveri NBRC 12016 2 2 No Clostridium perfringens SM101 1 1 No Clostridium perfringens str. 13 1 1 No Clostridium botulinum H04402 065 1 1 No Clostridium botulinum BKT015925 3 2 No Clostridium botulinum F str. 230613 1 1 No Clostridium botulinum F str. Langeland 1 1 No Clostridium botulinum E3 str. Alaska E43 3 3 No Clostridium botulinum B1 str. Okra 1 1 No Clostridium botulinum Ba4 str. 657 1 1 No Clostridium botulinum A2 str. Kyoto 1 1 No Clostridium botulinum A3 str. Loch Maree 1 1 No Clostridium botulinum A str. Hall 1 1 No Clostridium botulinum A str. ATCC 19397 1 1 No Clostridium acetobutylicum DSM 1731 3 2 No Clostridium acetobutylicum EA 2018 3 2 No Halobacteroides halobius DSM 5150 1 1 No Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 1 1 No Paenibacillus sp. Y412MC10 3 2 No Paenibacillus mucilaginosus KNP414 3 3 No Paenibacillus mucilaginosus K02 5 5 No Paenibacillus polymyxa CR1 3 2 No Paenibacillus polymyxa SC2 5 3 No Paenibacillus polymyxa E681 3 2 No Bacillus amyloliquefaciens subsp. plantarum sequencing 2 1 No Bacillus amyloliquefaciens subsp. plantarum UCMB5033 2 1 No Bacillus amyloliquefaciens subsp. plantarum AS43.3 2 1 No Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2 2 1 No Bacillus amyloliquefaciens subsp. plantarum UCMB5113 2 1 No Bacillus amyloliquefaciens subsp. plantarum UCMB5036 2 1 No Bacillus amyloliquefaciens subsp. plantarum CAU B946 2 1 No Bacillus amyloliquefaciens LFB112 2 1 No Bacillus amyloliquefaciens CC178 2 1 No Bacillus amyloliquefaciens Y2 2 1 No Bacillus amyloliquefaciens IT-45 2 1 No Bacillus amyloliquefaciens XH7 2 1 No Bacillus amyloliquefaciens LL3 2 1 No Bacillus amyloliquefaciens TA208 2 1 No Bacillus amyloliquefaciens DSM 7 2 1 No Bacillus licheniformis 9945A 2 1 No Bacillus subtilis PY79 3 2 No Bacillus subtilis XF-1 3 2 No Bacillus subtilis QB928 3 2 No Bacillus subtilis BSn5 3 2 No Bacillus subtilis subsp. subtilis str. BAB-1 3 2 No Bacillus subtilis subsp. subtilis str. BSP1 3 2 No Bacillus subtilis subsp. subtilis str. RO-NN-1 3 2 No Bacillus subtilis subsp. subtilis 6051-HGW 3 2 No Bacillus subtilis subsp. spizizenii TU-B-10 3 2 No Bacillus subtilis subsp. spizizenii str. W23 3 2 No Bacillus subtilis subsp. natto BEST195 3 2 No Bacillus licheniformis DSM 13 = ATCC 14580 2 1 No Bacillus infantis NRRL B-14911 2 1 No Bacillus thuringiensis HD-771 1 1 No Bacillus thuringiensis HD-789 1 1 No Bacillus thuringiensis MC28 1 1 No Bacillus thuringiensis serovar chinensis CT-43 1 1 No Bacillus thuringiensis YBT-1518 1 1 No Bacillus thuringiensis Bt407 1 1 No Bacillus thuringiensis serovar finitimus YBT-020 1 1 No Bacillus thuringiensis serovar thuringiensis str. IS5056 1 1 No Bacillus cereus FRI-35 1 1 No Bacillus cereus B4264 1 1 No Bacillus cereus G9842 1 1 No Chlorobium phaeobacteroides BS1 3 3 No Salinibacter ruber DSM 13855 26 25 No Rhodothermus marinus SG0.5JP17-172 25 25 No Echinicola vietnamensis DSM 17526 101 100 No Emticicia oligotrophica DSM 17448 64 64 No Prevotella sp. oral taxon 299 str. F0039 33 33 No Prevotella dentalis DSM 3688 47 47 No Porphyromonas gingivalis TDC60 15 15 No Porphyromonas gingivalis W83 16 16 No Alistipes shahii WAL 8301 40 40 No Bacteroides xylanisolvens XB1A 114 114 No Bacteroides fragilis 638R 104 103 No Bacteroides fragilis NCTC 9343 99 98 No Nonlabens dokdonensis DSW-6 29 28 No Psychroflexus torquis ATCC 700755 41 41 No Riemerella anatipestifer RA-CH-2 9 9 No Riemerella anatipestifer RA-CH-1 7 7 No Riemerella anatipestifer RA-GD 9 9 No Riemerella anatipestifer ATCC 11845 = DSM 15868 9 9 No Fibrobacter succinogenes subsp. succinogenes S85 8 8 No Singulisphaera acidiphila DSM 18658 30 16 No Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 2 2 No Leptospira interrogans serovar Lai str. 56601 3 3 No Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 3 3 No Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' 3 3 No Treponema pedis str. T A4 2 2 No Spirochaeta thermophila DSM 6578 1 1 No Leptospirillum ferriphilum ML-04 1 1 No Fusobacterium nucleatum subsp. vincentii 3_1_36A2 3 3 No Fusobacterium nucleatum subsp. animalis 4_8 3 3 No Bdellovibrio exovorus JSS 1 1 No Lawsonia intracellularis N343 1 1 No Desulfovibrio gigas DSM 1382 = ATCC 19364 1 1 No Geobacter sp. M18 8 4 No Geobacter sulfurreducens PCA 3 2 No Sorangium cellulosum So0157-2 13 13 No Anaeromyxobacter sp. K 10 9 No Anaeromyxobacter dehalogenans 2CP-C 5 4 No Myxococcus stipitatus DSM 14675 38 22 No Burkholderia sp. CCGE1003 1 1 No Burkholderia sp. KJ006 3 3 No Burkholderia thailandensis MSMB121 1 1 No Burkholderia pseudomallei MSHR305 2 2 No Burkholderia pseudomallei NCTC 13179 2 2 No Burkholderia pseudomallei BPC006 1 1 No Burkholderia pseudomallei 1026b 2 2 No Burkholderia pseudomallei 668 2 2 No Burkholderia pseudomallei 1710b 1 1 No Burkholderia pseudomallei K96243 2 2 No Burkholderia mallei NCTC 10229 2 2 No Burkholderia mallei NCTC 10247 2 2 No Burkholderia mallei ATCC 23344 2 2 No Burkholderia ambifaria MC40-6 1 1 No Burkholderia multivorans ATCC 17616 1 1 No Variovorax paradoxus EPS 1 1 No Zymomonas mobilis subsp. mobilis ATCC 29191 1 1 No Zymomonas mobilis subsp. mobilis CP4 1 1 No Zymomonas mobilis subsp. mobilis ATCC 10988 1 1 No Zymomonas mobilis subsp. mobilis ZM4 1 1 No Zymomonas mobilis subsp. pomaceae ATCC 29192 1 1 No Rhodobacter sphaeroides ATCC 17025 1 1 No Sinorhizobium fredii USDA 257 1 1 No Sinorhizobium fredii HH103 1 1 No Sinorhizobium meliloti Rm41 1 1 No Sinorhizobium meliloti SM11 1 1 No Sinorhizobium meliloti BL225C 1 1 No Simiduia agarivorans SA1 = DSM 21679 1 1 No Vibrio nigripulchritudo VibrioScope 1 1 No Idiomarina loihiensis GSL 199 1 1 No Shewanella sp. ANA-3 2 2 No Shewanella baltica BA175 1 1 No Shewanella baltica OS678 1 1 No Shewanella baltica OS117 1 1 No Shewanella baltica OS223 2 2 No Shewanella baltica OS195 1 1 No Shewanella baltica OS155 1 1 No Shewanella sp. MR-7 1 1 No Glaciecola psychrophila 170 5 5 No Alteromonas macleodii str. 'Ionian Sea UM4b' 4 3 No Alteromonas macleodii str. 'Ionian Sea UM7' 4 3 No Alteromonas macleodii str. 'Ionian Sea U8' 2 2 No Alteromonas macleodii str. 'Ionian Sea U7' 2 2 No Alteromonas macleodii str. 'Ionian Sea U4' 2 2 No Alteromonas macleodii str. 'Aegean Sea MED64' 2 2 No Alteromonas macleodii str. 'English Channel 615' 2 2 No Alteromonas macleodii AltDE1 4 3 No Alteromonas macleodii str. 'English Channel 673' 3 3 No Alteromonas macleodii str. 'Balearic Sea AD45' 3 3 No Alteromonas macleodii str. 'Black Sea 11' 3 3 No Alteromonas macleodii ATCC 27126 1 1 No Thalassolituus oleivorans MIL-1 1 1 No Stenotrophomonas maltophilia D457 2 2 No Stenotrophomonas maltophilia JV3 1 1 No Stenotrophomonas maltophilia R551-3 1 1 No Xanthomonas citri subsp. citri Aw12879 2 2 No Xanthomonas campestris pv. vesicatoria str. 85-10 2 2 No Xanthomonas axonopodis pv. citrumelo F1 2 2 No Xanthomonas axonopodis Xac29-1 2 2 No Xanthomonas oryzae pv. oryzicola BLS256 2 2 No Xanthomonas oryzae pv. oryzae MAFF 311018 2 2 No Xanthomonas oryzae pv. oryzae KACC 10331 2 2 No Xanthomonas campestris pv. raphani 756C 2 2 No Xanthomonas campestris pv. campestris str. 8004 2 2 No Xanthomonas campestris pv. campestris str. ATCC 33913 2 2 No Thioalkalivibrio nitratireducens DSM 14787 2 2 No Morganella morganii subsp. morganii KT 1 1 No Yersinia pseudotuberculosis IP 32953 1 1 No Serratia sp. AS13 1 1 No Serratia plymuthica 4Rx13 1 1 No Serratia liquefaciens ATCC 27592 1 1 No Pectobacterium carotovorum subsp. carotovorum PCC21 1 1 No Shigella sonnei 53G 2 2 No Shigella flexneri 2002017 2 2 No Shigella flexneri 2a str. 2457T 1 1 No Shigella dysenteriae 1617 2 2 No Shigella boydii Sb227 3 3 No Salmonella bongori N268-08 1 1 No Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 1 1 No Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 1 1 No Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 2 2 No Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 2 2 No Salmonella enterica subsp. enterica serovar Newport str. SL254 2 2 No Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2 2 No Salmonella enterica subsp. enterica serovar Typhimurium str. 798 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 2 2 No Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 2 2 No Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 2 2 No Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 2 2 No Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 2 2 No Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3 3 No Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 3 3 No Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104 2 2 No Salmonella enterica serovar Bovismorbificans genomics 2 2 No Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 1 1 No Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. B182 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 1 1 No Klebsiella oxytoca KCTC 1686 1 1 No Klebsiella pneumoniae JM45 1 1 No Klebsiella pneumoniae CG43 1 1 No Klebsiella pneumoniae KCTC 2242 1 1 No Klebsiella pneumoniae 342 1 1 No Klebsiella pneumoniae subsp. pneumoniae 1084 1 1 No Klebsiella pneumoniae subsp. pneumoniae HS11286 1 1 No Klebsiella pneumoniae subsp. pneumoniae MGH 78578 1 1 No Klebsiella pneumoniae subsp. rhinoscleromatis SB3432 1 1 No Enterobacter aerogenes EA1509E 1 1 No Escherichia coli E24377A 2 2 No Escherichia coli E. coli PMV-1 4 4 No Escherichia coli JJ1886 5 5 No Escherichia coli LY180 2 2 No Escherichia coli APEC O78 4 4 No Escherichia coli O7:K1 str. CE10 4 4 No Escherichia coli O104:H4 str. 2009EL-2050 4 4 No Escherichia coli O104:H4 str. 2009EL-2071 4 4 No Escherichia coli O104:H4 str. 2011C-3493 5 5 No Escherichia coli NA114 2 2 No Escherichia coli str. 'clone D i2' 3 3 No Escherichia coli str. 'clone D i14' 3 3 No Escherichia coli UM146 3 3 No Escherichia coli 042 5 5 No Escherichia coli Xuzhou21 10 10 No Escherichia coli IHE3034 5 5 No Escherichia coli UMNK88 1 1 No Escherichia coli O83:H1 str. NRG 857C 3 3 No Escherichia coli ABU 83972 3 3 No Escherichia coli KO11FL 2 2 No Escherichia coli KO11FL 2 2 No Escherichia coli LF82 3 3 No Escherichia coli ED1a 8 8 No Escherichia coli IAI39 6 6 No Escherichia coli UMN026 4 4 No Escherichia coli 55989 5 5 No Escherichia coli S88 5 5 No Escherichia coli IAI1 3 3 No Escherichia coli W 1 1 No Escherichia coli W 1 1 No Escherichia coli DH1 2 2 No Escherichia coli DH1 2 2 No Escherichia coli ATCC 8739 2 2 No Escherichia coli BL21(DE3) 2 2 No Escherichia coli BL21(DE3) 2 2 No Escherichia coli SMS-3-5 2 2 No Escherichia coli SE15 2 2 No Escherichia coli SE11 5 5 No Escherichia coli APEC O1 6 6 No Escherichia coli O103:H2 str. 12009 11 11 No Escherichia coli UTI89 4 4 No Escherichia coli 536 2 2 No Escherichia coli HS 1 1 No Escherichia coli ETEC H10407 3 3 No Escherichia coli O55:H7 str. RM12579 9 9 No Escherichia coli O55:H7 str. CB9615 9 9 No Escherichia coli O26:H11 str. 11368 13 13 No Escherichia coli CFT073 4 4 No Escherichia coli O111:H- str. 11128 10 10 No Escherichia coli O127:H6 str. E2348/69 5 5 No Escherichia coli O157:H7 str. TW14359 13 13 No Escherichia coli O157:H7 str. EC4115 10 10 No Escherichia coli O157:H7 str. Sakai 10 10 No Escherichia coli O157:H7 str. EDL933 10 10 No Escherichia coli BW2952 2 2 No Escherichia coli str. K-12 substr. MG1655 2 2 No Escherichia coli str. K-12 substr. W3110 2 2 No Escherichia coli str. K-12 substr. DH10B 2 2 No Escherichia coli B str. REL606 4 4 No Acinetobacter sp. SH024 1 1 No Acinetobacter junii SH205 1 1 No Candidatus Nitrososphaera gargensis Ga9.2 5 2 No Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1 1 1 No Caldisphaera lagunensis DSM 15908 1 1 No Aeropyrum camini SY1 = JCM 12091 1 1 No Sulfolobus islandicus LAL14/1 3 3 No Sulfolobus islandicus REY15A 2 2 No Sulfolobus islandicus HVE10/4 2 2 No Sulfolobus islandicus L.S.2.15 1 1 No Sulfolobus islandicus M.16.27 1 1 No Sulfolobus islandicus M.14.25 1 1 No Sulfolobus islandicus M.16.4 1 1 No Sulfolobus islandicus L.D.8.5 1 1 No Sulfolobus solfataricus 98/2 1 1 No Sulfolobus acidocaldarius SUSAZ 3 3 No Sulfolobus acidocaldarius Ron12/I 2 2 No Sulfolobus acidocaldarius N8 2 2 No Methanomethylovorans hollandica DSM 15978 6 6 No Methanolobus psychrophilus R15 3 3 No Methanosarcina mazei Tuc01 6 6 No Methanoregula formicica Methanoregula formicicum SMSP 4 2 No Archaeoglobus sulfaticallidus PM70-1 2 2 No Thermococcus sp. AM4 3 3 No Thermococcus sp. CL1 1 1 No Thermococcus litoralis DSM 5473 3 3 No Pyrococcus sp. NA2 2 2 No Pyrococcus furiosus DSM 3638 2 2 No Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 2 1 No Ferroplasma acidarmanus fer1 2 2 No Halovivax ruber XH-70 8 3 No Natronococcus occultus SP4 8 7 No Natronobacterium gregoryi SP2 3 3 No Natronomonas moolapensis 8.8.11 1 1 No Haloarcula hispanica N601 2 1 No Methanobacterium sp. SWAN-1 1 1 Yes Homo sapiens 75_37 (old version GRC) Human 38 34 Yes Homo sapiens Human 27 23 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 14 12 Yes Heliconius numata 2 2 Yes Loa loa v3.3 (Request) Eye worm 4 3 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 5 5 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 2 Yes Malus x domestica (Duplicate) Apple 3 3 Yes Ricinus communis Castor bean 3 3 Yes Nicotiana benthamiana 0.4.4 (Early draft) 4 4 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2 Yes Phoenix dactylifera Date palm 1 1 No Mycobacterium tuberculosis H37Rv (Duplicate of ex) 2 2 No Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 1 1 Yes Homo sapiens 69_37 Human 18 16 Yes Pan troglodytes 69_2.1.4 Chimpanzee 13 11 Yes Gorilla gorilla 69_3.1 Western gorilla 12 12 Yes Pongo abelii 69_2 Sumatran orangutan 15 13 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 15 13 Yes Macaca mulatta 69_1 Rhesus monkey 12 12 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 14 12 Yes Otolemur garnettii 69_3 Small-eared galago 16 14 Yes Microcebus murinus 69_1 Gray mouse lemur 13 12 Yes Rattus norvegicus 69_3.4 Norway rat 14 12 Yes Mus musculus 69_38 House mouse 14 12 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 13 12 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 11 Yes Cavia porcellus 69_3 Domestic guinea pig 15 13 Yes Oryctolagus cuniculus 69_2 Rabbit 17 15 Yes Ochotona princeps 69 American pika 6 5 Yes Tupaia belangeri 69 Northern tree shrew 10 8 Yes Sus scrofa 69_10.2 Pig 14 12 Yes Bos taurus 69_3.1 Cattle 16 15 Yes Vicugna pacos 69_1 Alpaca 5 3 Yes Tursiops truncatus 69_1 Bottlenose dolphin 15 13 Yes Mustela putorius furo 69_1.0 Domestic ferret 15 13 Yes Ailuropoda melanoleuca 69_1 Giant panda 15 13 Yes Canis familiaris 69_3.1 Dog 14 12 Yes Felis catus 69 Domestic cat 9 8 Yes Equus caballus 69_2 Horse 17 15 Yes Myotis lucifugus 69_2.0 Little brown bat 14 12 Yes Pteropus vampyrus 69_1 Large flying fox 14 12 Yes Sorex araneus 69_1 European shrew 10 8 Yes Erinaceus europaeus 69 Western European hedgehog 9 7 Yes Procavia capensis 69_1 Cape rock hyrax 14 12 Yes Loxodonta africana 69_3 African savanna elephant 15 13 Yes Echinops telfairi 69 Small Madagascar hedgehog 8 8 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 10 8 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 7 Yes Macropus eugenii 69_1.0 Tammar wallaby 11 10 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 12 11 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 16 14 Yes Ornithorhynchus anatinus 69_5 Platypus 14 12 Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4 Yes Meleagris gallopavo 69_2 Turkey 15 14 Yes Gallus gallus 69_2 Chicken 14 12 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 14 12 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 12 10 Yes Anolis carolinensis 69_2.0 Green anole 13 13 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 13 12 Yes Latimeria chalumnae 69_1 Coelacanth 12 10 Yes Gadus morhua 69_1 Atlantic cod 17 15 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 16 14 Yes Takifugu rubripes 69_4 Torafugu 23 21 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 18 16 Yes Oryzias latipes 69_1 Japanese medaka 21 19 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 19 18 Yes Oreochromis niloticus 69_1.0 Nile tilapia 20 18 Yes Danio rerio 69_9 Zebrafish 22 18 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5 Yes Ciona intestinalis 69 Vase tunicate 4 4 Yes Drosophila melanogaster 69_5 Fruit fly 6 3 Yes Caenorhabditis elegans 69_215 Roundworm 3 3 Yes Arabidopsis thaliana 10 Thale cress 1 1 No 1_050719N (meta-genome) 35 32 No 1_Upper_euphotic (meta-genome) 2 2 No 2_050719S (meta-genome) 81 65 No 2_Base_of_chrolophyll_max (meta-genome) 3 3 No 3_050719R (meta-genome) 58 47 No 3_Below_base_of_euphotic (meta-genome) 9 9 No 4_050719Q (meta-genome) 111 105 No 4_Deep_abyss (meta-genome) 8 8 No 5_050719P (meta-genome) 85 73 No 5_Below_upper_mesopelagic (meta-genome) 11 11 No 6_Upper_euphotic (meta-genome) 4 3 No 7_Oxygen_minimum_layer (meta-genome) 8 8 No Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 2 2 No Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 2 1 No Air microbial communities Singapore indoor air filters 1 (meta-genome) 19 19 No Air microbial communities Singapore indoor air filters 2 (meta-genome) 6 6 No Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome) 1 1 No Atta cephalotes fungus garden (ACEF) (meta-genome) 6 6 No Bath Hot Springs, filamentous community (meta-genome) 7 4 No Bath Hot Springs, planktonic community (meta-genome) 8 8 No Combined (meta-genome) 239 239 No Crater Hills (meta-genome) 5 5 No Cyphomyrmex longiscapus fungus garden (meta-genome) 43 43 No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 No Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 3 3 No Dump bottom (Dump bottom) (meta-genome) 374 372 No Dump top (Dump top) (meta-genome) 311 307 No Endophytic microbiome from Rice (meta-genome) 3 3 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 52 52 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 57 55 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 62 62 No Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 50 48 No Fungus garden combined (combined) (meta-genome) 11 11 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 18 18 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 32 32 No Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 49 47 No Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 9 7 No Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 16 16 No Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 24 23 No Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 27 26 No Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 17 16 No Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 10 10 No Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 29 28 No Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 11 9 No Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 14 13 No Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 11 11 No Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome) 30 30 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 11 11 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome) 9 9 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 69 58 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome) 29 23 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome) 5 5 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 72 69 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 61 56 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 62 59 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 63 56 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome) 6 6 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome) 3 3 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 52 46 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome) 18 14 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome) 7 6 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 39 37 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 107 103 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 65 64 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome) 12 12 No Human Gut Community Subject 7 (meta-genome) 7 7 No Human Gut Community Subject 8 (meta-genome) 6 5 No Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 102 102 No Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 89 89 No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 74 74 No Marine anammox bioreactor enriched for Scalindua species (meta-genome) 32 32 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 285 264 No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 93 88 No Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 25 22 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 87 81 No Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 66 60 No Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 14 13 No Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 105 105 No Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 59 59 No Mouse Gut Community lean1 (meta-genome) 7 6 No Mouse Gut Community lean2 (meta-genome) 7 7 No Mouse Gut Community lean3 (meta-genome) 7 7 No Mouse Gut Community ob2 (meta-genome) 3 3 No NCBI 2017_08 genome 180739 174430 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 177 173 No Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 13 9 No Protozoadb 2010_08 (Protozoadb) 6 6 No simHC - Simulated High Complexity Metagenome (meta-genome) 15 14 No simLC - Simulated Low Complexity Metagenome (meta-genome) 17 17 No simMC - Simulated Medium Complexity Metagenome (meta-genome) 11 11 No Single-cell genome from subgingival tooth surface TM7b (meta-genome) 1 1 No Single-cell genome from subgingival tooth surface TM7c (meta-genome) 1 1 No Sludge/Australian, Phrap Assembly (meta-genome) 32 31 No Sludge/US, Jazz Assembly (meta-genome) 18 18 No Sludge/US, Phrap Assembly (meta-genome) 39 39 No Soil microbial communities from Minnesota Farm (meta-genome) 277 269 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 220 216 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 181 179 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 88 88 No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 94 92 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 224 223 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 252 251 No Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 33 32 No STRING v9.0.5 (STRING) 3139 2904 No Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 29 29 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 258 255 No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 55 54 No Termite Protist Endosymbiont Community (meta-genome) 10 10 No Uniprot 2018_03 genome 129571 123095 No Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 96 88 No Global Ocean Sampling Expedition (GOS) 4304 4242 No NCBI plasmid sequences (Plasmids) 94 84 No NCBI viral sequences (Viral) 26 25 No PDB chains (SCOP 1.75 ) (PDB) 3 3 No Protein Data Bank (all PDB sequenc) 31 31 No SCOP2 SCOPe CATH ECOD (all domain sequ) 44 44 No TargetDB 83 82 No The Salmonella enterica Pan-genome (meta-genome) 28 28 No UniProt 19 19
