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delta-Endotoxin, C-terminal domain family domain assignments
in
all bacterial and archaeal genomes

Assignment details

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3 selected genomes have 12 significant domains in 12 proteins.


Bacillus thuringiensis HD-771 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|402558254|ref|YP_006593945.1|   1.17e-52   0.000000129   462-609   1ciy A:462-609  

Bacillus thuringiensis serovar chinensis CT-43 has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|384183695|ref|YP_005569329.1|   1.16e-47   0.0000353   492-638   1ciy A:462-609  
gi|384184074|ref|YP_005569707.1|   1.06e-56   0.0000000988   473-633   1i5p A:473-633  
gi|384184079|ref|YP_005569712.1|   1.17e-52   0.000000129   462-609   1ciy A:462-609  
gi|384184080|ref|YP_005569713.1|   1.17e-52   0.00000245   500-646   1ciy A:462-609  
gi|384184086|ref|YP_005569719.1|   4.53e-62   0.0000000449   473-633   1i5p A:473-633  

Bacillus thuringiensis serovar thuringiensis str. IS5056 has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|452196162|ref|YP_007482660.1|   1.06e-56   0.0000000988   473-633   1i5p A:473-633  
gi|452196169|ref|YP_007482667.1|   1.17e-52   0.000000129   462-609   1ciy A:462-609  
gi|452196170|ref|YP_007482668.1|   1.17e-52   0.00000245   500-646   1ciy A:462-609  
gi|452196177|ref|YP_007482675.1|   4.53e-62   0.0000000449   473-633   1i5p A:473-633  
gi|452202051|ref|YP_007492018.1|   1.17e-52   0.000000129   463-610   1ciy A:462-609  
gi|452202700|ref|YP_007492080.1|   1.16e-47   0.0000353   492-638   1ciy A:462-609  

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Select to display   Genome       Domains   Proteins
No Yes ALL   774 774
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   5 5
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   6 6
No Yes NCBI 2017_08 genome   288 288
No Yes Uniprot 2018_03 genome   422 422
No Yes NCBI plasmid sequences (Plasmids)   12 12
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   10 10
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   24 24

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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