Select to display Genome Domains Proteins No ALL 127537 127537 Yes Homo sapiens 76_38 Human 66 65 Yes Pan troglodytes 76_2.1.4 Chimpanzee 26 26 Yes Gorilla gorilla 76_3.1 Western gorilla 32 32 Yes Pongo abelii 76_2 Sumatran orangutan 25 25 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 29 29 Yes Papio anubis 76 Olive baboon 29 28 Yes Macaca mulatta 76_1 Rhesus monkey 35 35 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 50 50 Yes Otolemur garnettii 76_3 Small-eared galago 27 27 Yes Microcebus murinus 76_1 Gray mouse lemur 25 25 Yes Rattus norvegicus 76_5.0 Norway rat 25 25 Yes Mus musculus 76_38 House mouse 45 44 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 22 22 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 26 26 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 28 28 Yes Cavia porcellus 76_3 Domestic guinea pig 24 24 Yes Oryctolagus cuniculus 76_2 Rabbit 28 27 Yes Ochotona princeps 76 American pika 22 22 Yes Tupaia belangeri 76 Northern tree shrew 20 20 Yes Sus scrofa 76_10.2 Pig 30 30 Yes Bos taurus 76_3.1 Cattle 27 27 Yes Ovis aries 76_3.1 Sheep 30 30 Yes Vicugna pacos 76_1 Alpaca 17 17 Yes Tursiops truncatus 76_1 Bottlenose dolphin 25 25 Yes Mustela putorius furo 76_1.0 Domestic ferret 28 27 Yes Ailuropoda melanoleuca 76_1 Giant panda 32 32 Yes Canis familiaris 76_3.1 Dog 38 38 Yes Felis catus 76_6.2 Domestic cat 27 27 Yes Equus caballus 76_2 Horse 30 30 Yes Myotis lucifugus 76_2.0 Little brown bat 29 29 Yes Pteropus vampyrus 76_1 Large flying fox 26 26 Yes Sorex araneus 76_1 European shrew 16 15 Yes Erinaceus europaeus 76 Western European hedgehog 20 19 Yes Procavia capensis 76_1 Cape rock hyrax 20 20 Yes Loxodonta africana 76_3 African savanna elephant 36 36 Yes Echinops telfairi 76 Small Madagascar hedgehog 25 25 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 24 24 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 21 19 Yes Macropus eugenii 76_1.0 Tammar wallaby 23 23 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 29 29 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 27 27 Yes Ornithorhynchus anatinus 76_5 Platypus 27 27 Yes Saccoglossus kowalevskii v3.0 24 24 Yes Petromyzon marinus 76_7.0 Sea lamprey 15 15 Yes Meleagris gallopavo 76_2 Turkey 25 25 Yes Gallus gallus 76_4 Chicken 31 31 Yes Anas platyrhynchos 76_1.0 Mallard 30 30 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 26 26 Yes Ficedula albicollis 76_1.0 Collared flycatcher 29 29 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 39 39 Yes Anolis carolinensis 76_2.0 Green anole 30 30 Yes Xenopus laevis African clawed frog 16 16 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 28 28 Yes Latimeria chalumnae 76_1 Coelacanth 27 27 Yes Lepisosteus oculatus 76 Spotted gar 41 41 Yes Gadus morhua 76_1 Atlantic cod 32 32 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 28 28 Yes Takifugu rubripes 76_4 Torafugu 78 78 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 38 38 Yes Oryzias latipes 76_1 Japanese medaka 35 35 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 29 29 Yes Poecilia formosa 76 Amazon molly 33 33 Yes Oreochromis niloticus 76_1.0 Nile tilapia 41 41 Yes Astyanax mexicanus 76 Mexican tetra 29 29 Yes Danio rerio 76_9 Zebrafish 48 48 Yes Oikopleura dioica 16 16 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 17 17 Yes Ciona intestinalis 76 Vase tunicate 17 14 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 17 16 Yes Adineta vaga 58 57 Yes Octopus bimaculoides 280 17 17 Yes Crassostrea gigas 22 Pacific oyster 19 18 Yes Lottia gigantea Owl limpet 18 17 Yes Helobdella robusta 36 25 Yes Capitella sp. I 37 27 Yes Danaus plexippus OGS1.0 Monarch butterfly 10 9 Yes Heliconius melpomene Postman butterfly 10 9 Yes Bombyx mori Domestic silkworm 12 12 Yes Nasonia vitripennis Jewel wasp 7 7 Yes Apis mellifera 38.2d (Not maintained) Honey bee 20 20 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 10 9 Yes Linepithema humile v1.1 Argentine ant 10 10 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 8 Yes Solenopsis invicta v.2.2.3 Red fire ant 6 6 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 9 8 Yes Atta cephalotes v1.1 10 10 Yes Camponotus floridanus v3.3 Florida carpenter ant 9 8 Yes Lucilia cuprina Australian sheep blowfly 13 12 Yes Drosophila grimshawi 1.3 13 12 Yes Drosophila willistoni 1.3 11 11 Yes Drosophila pseudoobscura 2.13 11 11 Yes Drosophila persimilis 1.3 11 11 Yes Drosophila suzukii 17 13 Yes Drosophila yakuba 1.3 17 16 Yes Drosophila simulans 1.3 14 14 Yes Drosophila sechellia 1.3 11 11 Yes Drosophila melanogaster 76_5 Fruit fly 25 25 Yes Drosophila erecta 1.3 14 14 Yes Drosophila ananassae 1.3 14 13 Yes Drosophila virilis 1.2 13 12 Yes Drosophila mojavensis 1.3 11 11 Yes Megaselia scalaris 22 4 4 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 20 20 Yes Culex pipiens quinquefasciatus Southern house mosquito 25 24 Yes Anopheles darlingi 22 American malaria mosquito 16 13 Yes Anopheles gambiae 49_3j African malaria mosquito 14 14 Yes Tribolium castaneum 3.0 Red flour beetle 14 13 Yes Pediculus humanus corporis Human body louse 9 8 Yes Acyrthosiphon pisum Pea aphid 7 7 Yes Rhodnius prolixus 22 11 10 Yes Daphnia pulex Common water flea 62 50 Yes Strigamia maritima 22 9 8 Yes Sarcoptes scabiei 7 7 Yes Tetranychus urticae Two-spotted spider mite 10 10 Yes Ixodes scapularis Black-legged tick 8 8 Yes Pristionchus pacificus 8 8 Yes Meloidogyne incognita Southern root-knot nematode 8 7 Yes Meloidogyne hapla 5 5 Yes Onchocerca volvulus 22 10 10 Yes Brugia malayi WS250 Agent of lymphatic filariasis 12 12 Yes Caenorhabditis japonica 9 9 Yes Caenorhabditis brenneri 10 10 Yes Caenorhabditis remanei 11 10 Yes Caenorhabditis elegans 76_235 Roundworm 22 22 Yes Caenorhabditis briggsae 2 11 10 Yes Trichinella spiralis 22 6 6 Yes Hymenolepis microstoma 3 3 Yes Echinococcus multilocularis 3 3 Yes Echinococcus granulosus 3 3 Yes Taenia solium Pork tapeworm 4 4 Yes Schistosoma mansoni 4 4 Yes Mnemiopsis leidyi Sea walnut 37 36 Yes Thelohanellus kitauei 1 1 Yes Acropora digitifera v1.0 20 18 Yes Nematostella vectensis 1.0 Starlet sea anemone 17 17 Yes Hydra vulgaris 15 15 Yes Amphimedon queenslandica 6 6 Yes Trichoplax adhaerens 10 10 Yes Proterospongia sp. ATCC 50818 22 19 Yes Monosiga brevicollis 25 24 Yes Sphaeroforma arctica JP610 14 11 Yes Capsaspora owczarzaki ATCC 30864 2 2 Yes Conidiobolus coronatus NRRL28638 v1.0 6 6 Yes Mortierella verticillata NRRL 6337 24 17 Yes Phycomyces blakesleeanus 24 14 Yes Rhizopus oryzae RA 99-880 36 19 Yes Mucor circinelloides 27 13 Yes Rhizomucor miehei CAU432 15 9 Yes Mixia osmundae IAM 14324 v1.0 1 1 Yes Cronartium quercuum f. sp. fusiforme G11 v1.0 2 2 Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3 2 2 Yes Microbotryum violaceum 22 1 1 Yes Wallemia sebi v1.0 1 1 Yes Sphaerobolus stellatus v1.0 64 53 Yes Piloderma croceum F 1598 v1.0 25 25 Yes Serpula lacrymans var. lacrymans S7.9 10 10 Yes Coniophora puteana 9 9 Yes Hydnomerulius pinastri v2.0 13 13 Yes Paxillus rubicundulus Ve08.2h10 v1.0 4 4 Yes Pisolithus microcarpus 441 v1.0 19 14 Yes Pisolithus tinctorius Marx 270 v1.0 7 7 Yes Scleroderma citrinum Foug A v1.0 18 18 Yes Coprinopsis cinerea okayama7 130 v3 41 29 Yes Pleurotus ostreatus Oyster mushroom 25 25 Yes Amanita thiersii Skay4041 v1.0 30 30 Yes Amanita muscaria Koide v1.0 Fly agaric 10 9 Yes Galerina marginata v1.0 45 38 Yes Hebeloma cylindrosporum h7 v2.0 18 17 Yes Laccaria bicolor S238N-H82 20 20 Yes Agaricus bisporus var. bisporus 28 27 Yes Schizophyllum commune 14 13 Yes Stereum hirsutum FP-91666 SS1 v1.0 17 11 Yes Heterobasidion annosum 6 6 Yes Gloeophyllum trabeum v1.0 6 6 Yes Punctularia strigosozonata v1.0 11 9 Yes Sebacina vermifera MAFF 305830 v1.0 8 8 Yes Fomitiporia mediterranea v1.0 12 12 Yes Tulasnella calospora AL13/4D v1.0 37 31 Yes Postia placenta 32 31 Yes Wolfiporia cocos MD-104 SS10 v1.0 12 12 Yes Fomitopsis pinicola v1.0 12 12 Yes Fomitopsis pinicola FP-58527 SS1 v3.0 12 12 Yes Phanerochaete chrysosporium RP-78 2.1 9 9 Yes Dichomitus squalens 15 14 Yes Trametes versicolor v1.0 11 10 Yes Tremella mesenterica Witches' butter 26 17 Yes Daldinia eschscholzii EC12 v1.0 3 2 Yes Apiospora montagnei NRRL 25634 v1.0 2 2 Yes Magnaporthe poae ATCC 64411 22 4 3 Yes Magnaporthe grisea 70-15 4 3 Yes Podospora anserina 3 2 Yes Sporotrichum thermophile ATCC 42464 3 2 Yes Thielavia terrestris NRRL 8126 4 3 Yes Chaetomium globosum CBS 148.51 3 2 Yes Neurospora tetrasperma 2 2 Yes Neurospora discreta FGSC 8579 1 1 Yes Neurospora crassa OR74A 2 2 Yes Cryphonectria parasitica Chestnut blight fungus 2 2 Yes Verticillium albo-atrum VaMs.102 1 1 Yes Verticillium dahliae VdLs.17 2 1 Yes Acremonium alcalophilum v 1.0 2 2 Yes Glomerella graminicola 22 3 2 Yes Fusarium graminearum 5 5 Yes Nectria haematococca mpVI 3 3 Yes Fusarium oxysporum f. sp. lycopersici 4286 3 3 Yes Fusarium verticillioides 7600 5 5 Yes Trichoderma asperellum CBS 433.97 v1.0 7 6 Yes Trichoderma atroviride 8 7 Yes Trichoderma citrinoviride v1.0 5 4 Yes Trichoderma reesei 1.2 6 5 Yes Trichoderma virens Gv29-8 12 11 Yes Trichoderma longibrachiatum ATCC 18648 v1.0 6 5 Yes Trichoderma harzianum CBS 226.95 v1.0 11 10 Yes Amorphotheca resinae v1.0 Creosote fungus 2 2 Yes Botrytis cinerea B05.10 3 3 Yes Sclerotinia sclerotiorum 5 4 Yes Didymella exigua CBS 183.55 v1.0 2 2 Yes Leptosphaeria maculans 22 1 1 Yes Setosphaeria turcica v1.0 3 3 Yes Cochliobolus miyabeanus ATCC 44560 v1.0 3 3 Yes Cochliobolus victoriae FI3 v1.0 2 2 Yes Cochliobolus carbonum 26-R-13 v1.0 2 2 Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2 Yes Alternaria brassicicola 2 2 Yes Cochliobolus lunatus m118 v2.0 4 4 Yes Pyrenophora teres f. teres 22 3 3 Yes Pyrenophora tritici-repentis 2 2 Yes Stagonospora nodorum 2 2 Yes Zasmidium cellare ATCC 36951 v1.0 3 3 Yes Dothistroma septosporum 2 2 Yes Septoria musiva v1.0 1 1 Yes Mycosphaerella fijiensis CIRAD86 1 1 Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 1 1 Yes Microsporum canis CBS 113480 1 1 Yes Aspergillus zonatus v1.0 4 4 Yes Penicillium chrysogenum Wisconsin 54-1255 3 3 Yes Penicillium chrysogenum v1.0 4 4 Yes Aspergillus acidus v1.0 1 1 Yes Aspergillus fumigatus Af293 1 1 Yes Aspergillus brasiliensis v1.0 1 1 Yes Aspergillus sydowii v1.0 3 3 Yes Aspergillus versicolor v1.0 2 2 Yes Aspergillus glaucus 2 2 Yes Aspergillus carbonarius ITEM 5010 1 1 Yes Neosartorya fischeri NRRL 181 1 1 Yes Aspergillus terreus NIH2624 2 2 Yes Aspergillus tubingensis v1.0 1 1 Yes Aspergillus wentii v1.0 2 2 Yes Aspergillus oryzae RIB40 5 5 Yes Aspergillus niger 22 1 1 Yes Aspergillus niger ATCC 1015 1 1 Yes Aspergillus flavus NRRL3357 4 4 Yes Aspergillus clavatus NRRL 1 1 1 Yes Catenaria anguillulae PL171 v1.0 27 23 Yes Allomyces macrogynus ATCC 38327 5 3 Yes Spizellomyces punctatus DAOM BR117 2 2 Yes Dictyostelium discoideum 20 12 Yes Dictyostelium purpureum 3 3 Yes Entamoeba dispar 1.2 8 8 Yes Entamoeba invadens 1.2 4 4 Yes Entamoeba histolytica 1 8 8 Yes Selaginella moellendorffii 29 22 Yes Pinus taeda Loblolly pine 32 27 Yes Picea abies Norway spruce 9 8 Yes Eucalyptus grandis v201 Rose gum 12 12 Yes Theobroma cacao B97-61/B2 v1 Cacao 3 3 Yes Gossypium raimondii v221 15 11 Yes Citrus clementina v165 5 5 Yes Citrus sinensis v154 Sweet orange 9 9 Yes Thellungiella halophila v173 5 5 Yes Brassica rapa Chiifu-401 1.2 Field mustard 5 5 Yes Capsella rubella v183 3 3 Yes Arabidopsis lyrata Lyrate rockcress 5 5 Yes Arabidopsis thaliana 10 Thale cress 3 3 Yes Carica papaya Papaya 5 5 Yes Medicago truncatula Barrel medic 15 15 Yes Phaseolus vulgaris v186 French bean 9 9 Yes Glycine max v109 Soybean 18 16 Yes Cucumis sativus v122 Cucumber 15 13 Yes Fragaria vesca Wild strawberry 2 2 Yes Malus domestica v196 Apple 13 10 Yes Prunus persica v139 Peach 3 3 Yes Linum usitatissimum v200 Flax 7 7 Yes Manihot esculenta v147 Cassava 3 3 Yes Populus trichocarpa v156 Black cottonwood 17 14 Yes Vitis vinifera Wine grape 8 8 Yes Mimulus guttatus v140 Spotted monkey flower 6 6 Yes Solanum lycopersicum v.2.3 Tomato 3 3 Yes Solanum tuberosum Potato 6 6 Yes Actinidia chinensis Hongyang 8 8 Yes Aquilegia coerulea v195 14 14 Yes Triticum urartu 22 14 10 Yes Triticum aestivum 22 Bread wheat 43 36 Yes Aegilops tauschii 22 16 11 Yes Brachypodium distachyon Stiff brome 23 18 Yes Oryza barthii 22 African wild rice 30 10 Yes Oryza meridionalis 22 22 12 Yes Oryza glumaepatula 22 27 11 Yes Oryza glaberrima African rice 11 9 Yes Oryza punctata 22 22 11 Yes Oryza nivara 22 19 11 Yes Oryza brachyantha 22 Malo sina 10 7 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 21 15 Yes Oryza sativa v193 Rice 21 15 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 18 13 Yes Panicum virgatum v202 Switchgrass 41 32 Yes Setaria italica v164 Foxtail millet 18 12 Yes Zea mays subsp. mays Maize 29 23 Yes Zea mays v181 Maize 26 20 Yes Sorghum bicolor Sorghum 16 12 Yes Musa balbisiana Balbis banana 11 9 Yes Musa acuminata 22 Wild Malaysian banana 10 10 Yes Amborella trichopoda 22 4 4 Yes Physcomitrella patens 6 5 Yes Asterochloris sp. Cgr/DA1pho v1.0 2 2 Yes Volvox carteri f. nagariensis 10 8 Yes Volvox carteri v199 10 7 Yes Chlamydomonas reinhardtii 4.0 5 4 Yes Thecamonas trahens ATCC 50062 1 1 Yes Bigelowiella natans CCMP2755 22 13 8 Yes Cyanophora paradoxa 2 2 Yes Ectocarpus siliculosus 2 1 Yes Aureococcus anophagefferens 10 8 Yes Albugo laibachii 22 1 1 Yes Pythium iwayamai DAOM BR242034 22 20 9 Yes Pythium arrhenomanes ATCC 12531 22 17 10 Yes Pythium ultimum v1.7-2 9 5 Yes Pythium aphanidermatum DAOM BR444 22 15 10 Yes Pythium irregulare DAOM BR486 22 6 3 Yes Pythium vexans DAOM BR484 22 10 7 Yes Phytophthora ramorum 1.1 Sudden oak death agent 21 11 Yes Phytophthora sojae 1.1 34 12 Yes Phytophthora infestans T30-4 17 8 Yes Phytophthora capsici 14 11 Yes Hyaloperonospora arabidopsidis 22 3 3 Yes Phaeodactylum tricornutum CCAP 1055/1 10 7 Yes Fragilariopsis cylindrus 2 2 Yes Thalassiosira pseudonana CCMP1335 5 5 Yes Perkinsus marinus ATCC 50983 19 14 Yes Paramecium tetraurelia 6 4 Yes Tetrahymena thermophila SB210 1 6 5 Yes Ichthyophthirius multifiliis strain G5 2 2 Yes Cryptosporidium hominis 5 5 Yes Cryptosporidium muris 7 7 Yes Cryptosporidium parvum Iowa II 6 6 Yes Neospora caninum 4 4 Yes Toxoplasma gondii VEG 7 7 Yes Toxoplasma gondii ME49 6 6 Yes Toxoplasma gondii GT1 6 6 Yes Babesia bovis T2Bo 4 4 Yes Theileria parva 2 2 Yes Theileria annulata 2 2 Yes Plasmodium falciparum 3D7 2 2 Yes Plasmodium vivax SaI-1 7.0 3 3 Yes Plasmodium knowlesi strain H 3 3 Yes Plasmodium yoelii ssp. yoelii 1 3 3 Yes Plasmodium chabaudi 2 2 Yes Plasmodium berghei ANKA 2 2 Yes Symbiodinium minutum clade B1 v1.2 49 39 Yes Naegleria gruberi 4 4 Yes Trichomonas vaginalis 13 13 Yes Guillardia theta CCMP2712 v1.0 4 4 Yes Emiliania huxleyi CCMP1516 5 5 No Microcoleus sp. PCC 7113 2 2 No Microcystis aeruginosa NIES-843 1 1 No Rivularia sp. PCC 7116 3 3 No Calothrix sp. PCC 7507 3 3 No Nostoc sp. PCC 7524 1 1 No Anabaena sp. 90 2 2 No Conexibacter woesei DSM 14684 1 1 No Eggerthella sp. YY7918 8 2 No Eggerthella lenta DSM 2243 1 1 No Thermobispora bispora DSM 43833 2 2 No Nakamurella multipartita DSM 44233 1 1 No Modestobacter marinus 1 1 No Catenulispora acidiphila DSM 44928 87 79 No Stackebrandtia nassauensis DSM 44728 9 8 No Frankia sp. EAN1pec 1 1 No Frankia alni ACN14a 7 7 No Thermobifida fusca YX 1 1 No Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 4 4 No Thermomonospora curvata DSM 43183 1 1 No Streptosporangium roseum DSM 43021 16 13 No Kitasatospora setae KM-6054 15 15 No Streptomyces coelicolor A3(2) 17 17 No Streptomyces sp. PAMC26508 12 12 No Streptomyces flavogriseus ATCC 33331 11 11 No Streptomyces sp. SirexAA-E 8 7 No Streptomyces griseus subsp. griseus NBRC 13350 14 14 No Streptomyces bingchenggensis BCW-1 24 21 No Streptomyces violaceusniger Tu 4113 7 7 No Streptomyces avermitilis MA-4680 12 12 No Streptomyces cattleya NRRL 8057 = DSM 46488 12 11 No Streptomyces scabiei 87.22 43 42 No Streptomyces hygroscopicus subsp. jinggangensis 5008 28 27 No Actinosynnema mirum DSM 43827 32 31 No Saccharopolyspora erythraea NRRL 2338 1 1 No Amycolatopsis mediterranei U32 55 54 No Kribbella flavida DSM 17836 12 11 No Salinispora arenicola CNS-205 4 4 No Salinispora tropica CNB-440 3 3 No Verrucosispora maris AB-18-032 28 27 No Micromonospora sp. L5 24 22 No Micromonospora aurantiaca ATCC 27029 23 22 No Actinoplanes sp. N902-109 36 32 No Actinoplanes sp. SE50/110 46 40 No Actinoplanes missouriensis 431 31 28 No Gordonia polyisoprenivorans VH2 1 1 No Mycobacterium canettii CIPT 140010059 1 1 No Mycobacterium africanum GM041182 1 1 No Mycobacterium tuberculosis KZN 1435 1 1 No Mycobacterium tuberculosis 1 1 No Mycobacterium bovis BCG str. Pasteur 1173P2 1 1 No Mycobacterium ulcerans Agy99 1 1 No Mycobacterium marinum M 1 1 No Sanguibacter keddieii DSM 10542 2 2 No Microbacterium testaceum StLB037 7 6 No Jonesia denitrificans DSM 20603 3 3 No Brachybacterium faecium DSM 4810 1 1 No Cellulomonas flavigena DSM 20109 7 7 No Cellulomonas fimi ATCC 484 10 10 No [Cellvibrio] gilvus ATCC 13127 4 4 No Arthrobacter chlorophenolicus A6 1 1 No Arthrobacter aurescens TC1 1 1 No Arthrobacter sp. Rue61a 1 1 No Renibacterium salmoninarum ATCC 33209 6 6 No Bifidobacterium longum subsp. longum JDM301 1 1 No Bifidobacterium bifidum S17 5 3 No Arcanobacterium haemolyticum DSM 20595 1 1 No Herpetosiphon aurantiacus DSM 785 4 3 No Deinococcus deserti VCD115 1 1 No Clostridium clariflavum DSM 19732 1 1 No Clostridium cellulolyticum H10 3 3 No Clostridium thermocellum ATCC 27405 2 2 No Faecalibacterium prausnitzii 2 2 No Ruminococcus bromii 1 1 No Ruminococcus albus 7 13 9 No butyrate-producing bacterium SM4/1 1 1 No Eubacterium limosum KIST612 1 1 No Clostridium phytofermentans ISDg 2 2 No Clostridium lentocellum DSM 5427 6 6 No [Ruminococcus] torques 2 1 No Eubacterium rectale M104/1 3 1 No Butyrivibrio proteoclasticus B316 3 3 No Butyrivibrio fibrisolvens 4 4 No Clostridium sp. BNL1100 2 2 No Clostridium perfringens ATCC 13124 1 1 No Clostridium cellulovorans 743B 4 4 No Clostridium botulinum A str. ATCC 3502 3 2 No Clostridium acetobutylicum ATCC 824 7 6 No Caldicellulosiruptor obsidiansis OB47 1 1 No Caldicellulosiruptor kronotskyensis 2002 1 1 No Caldicellulosiruptor hydrothermalis 108 5 2 No Caldicellulosiruptor owensensis OL 1 1 No Streptococcus gallolyticus UCN34 2 2 No Paenibacillus sp. JDR-2 8 4 No Paenibacillus terrae HPL-003 1 1 No Paenibacillus mucilaginosus 3016 6 6 No Paenibacillus polymyxa M1 3 3 No Lysinibacillus sphaericus C3-41 2 2 No Bacillus licheniformis DSM 13 = ATCC 14580 1 1 No Pelodictyon phaeoclathratiforme BU-1 1 1 No Chlorobium phaeobacteroides DSM 266 1 1 No Haliscomenobacter hydrossis DSM 1100 7 7 No Niastella koreensis GR20-10 4 4 No Chitinophaga pinensis DSM 2588 14 14 No Fibrella aestuarina 2 1 No Dyadobacter fermentans DSM 18053 1 1 No Spirosoma linguale DSM 74 2 2 No Runella slithyformis DSM 19594 1 1 No Paludibacter propionicigenes WB4 2 2 No Prevotella melaninogenica ATCC 25845 1 1 No Prevotella ruminicola 23 1 1 No Bacteroides thetaiotaomicron VPI-5482 2 2 No Bacteroides fragilis YCH46 1 1 No Pedobacter heparinus DSM 2366 1 1 No Sphingobacterium sp. 21 1 1 No Zunongwangia profunda SM-A87 1 1 No Aequorivita sublithincola DSM 14238 1 1 No Zobellia galactanivorans 1 1 No Cellulophaga lytica DSM 7489 1 1 No Flavobacterium johnsoniae UW101 6 6 No Fibrobacter succinogenes subsp. succinogenes S85 5 5 No Rhodopirellula baltica SH 1 1 1 No Opitutus terrae PB90-1 1 1 No Spirochaeta smaragdinae DSM 11293 1 1 No Candidatus Solibacter usitatus Ellin6076 1 1 No Granulicella tundricola MP5ACTX9 3 2 No Granulicella mallensis MP5ACTX8 9 8 No Terriglobus saanensis SP1PR4 1 1 No Terriglobus roseus DSM 18391 1 1 No Acidobacterium capsulatum ATCC 51196 1 1 No Campylobacter lari RM2100 2 2 No Campylobacter sp. 03-427 4 4 No Campylobacter fetus subsp. fetus 82-40 6 6 No Helicobacter hepaticus ATCC 51449 2 2 No Helicobacter cinaedi PAGU611 2 2 No Geobacter uraniireducens Rf4 1 1 No Haliangium ochraceum DSM 14365 1 1 No Sorangium cellulosum 'So ce 56' 9 9 No Stigmatella aurantiaca DW4/3-1 17 15 No Corallococcus coralloides DSM 2259 10 9 No Myxococcus xanthus DK 1622 2 2 No Myxococcus fulvus HW-1 3 3 No Aromatoleum aromaticum EbN1 1 1 No Laribacter hongkongensis HLHK9 1 1 No Chromobacterium violaceum ATCC 12472 3 3 No Burkholderia phytofirmans PsJN 1 1 No Burkholderia phymatum STM815 1 1 No Burkholderia xenovorans LB400 1 1 No Burkholderia sp. RPE64 2 2 No Burkholderia sp. CCGE1002 1 1 No Burkholderia thailandensis E264 2 1 No Burkholderia pseudomallei 1106a 4 2 No Burkholderia mallei SAVP1 4 2 No Burkholderia ambifaria AMMD 2 2 No Burkholderia glumae BGR1 2 2 No Delftia sp. Cs1-4 1 1 No Delftia acidovorans SPH-1 1 1 No Variovorax paradoxus S110 1 1 No Acidovorax sp. KKS102 1 1 No Collimonas fungivorans Ter331 3 2 No Caulobacter sp. K31 1 1 No Sphingomonas wittichii RW1 1 1 No Tistrella mobilis KA081020-065 1 1 No Candidatus Pelagibacter sp. IMCC9063 1 1 No Xanthobacter autotrophicus Py2 1 1 No Methylobacterium chloromethanicum CM4 1 1 No Methylobacterium extorquens AM1 2 1 No Methylobacterium sp. 4-46 2 1 No Bradyrhizobium sp. ORS 278 1 1 No Saccharophagus degradans 2-40 13 10 No Teredinibacter turnerae T7901 9 8 No Cellvibrio japonicus Ueda107 6 4 No Aggregatibacter actinomycetemcomitans D7S-1 2 2 No Haemophilus parasuis SH0165 4 4 No Haemophilus ducreyi 35000HP 3 3 No Actinobacillus pleuropneumoniae serovar 5b str. L20 1 1 No Aeromonas veronii B565 1 1 No Aeromonas salmonicida subsp. salmonicida A449 2 2 No Aeromonas hydrophila subsp. hydrophila ATCC 7966 2 2 No Vibrio harveyi ATCC BAA-1116 1 1 No Vibrio anguillarum 775 1 1 No Vibrio furnissii NCTC 11218 1 1 No Vibrio vulnificus MO6-24/O 1 1 No Vibrio cholerae O395 1 1 No Photobacterium profundum SS9 1 1 No Ferrimonas balearica DSM 9799 6 2 No Shewanella baltica OS185 1 1 No Shewanella sp. MR-4 2 1 No Shewanella putrefaciens CN-32 2 1 No Marinobacter hydrocarbonoclasticus ATCC 49840 1 1 No Alteromonas sp. SN2 1 1 No Hahella chejuensis KCTC 2396 11 10 No Marinomonas mediterranea MMB-1 1 1 No gamma proteobacterium HdN1 1 1 No Pectobacterium wasabiae WPP163 2 2 No Pectobacterium sp. SCC3193 2 2 No Pectobacterium atrosepticum SCRI1043 1 1 No Pectobacterium carotovorum subsp. carotovorum PC1 1 1 No Salmonella bongori NCTC 12419 1 1 No Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 1 1 No Pseudomonas brassicacearum subsp. brassicacearum NFM421 1 1 No Pseudomonas syringae pv. tomato str. DC3000 3 1 No Pseudomonas putida F1 1 1 No Methanohalobium evestigatum Z-7303 1 1 No Halopiger xanaduensis SH-6 3 3 No Haloterrigena turkmenica DSM 5511 6 6 No Halomicrobium mukohataei DSM 12286 1 1 No Halorhabdus utahensis DSM 12940 3 3 No Haloarcula marismortui ATCC 43049 2 2 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 42 42 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 25 25 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 15 15 Yes Ascaris suum Victoria/Ghent Pig roundworm 10 10 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 15 15 Yes Cryptococcus neoformans var. grubii H99 5 5 Yes Cryptococcus neoformans B-3501A 5 5 Yes Cryptococcus neoformans JEC21 5 5 Yes Batrachochytrium dendrobatidis JEL423 3 2 Yes Batrachochytrium dendrobatidis JAM81 1 1 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 3 3 Yes Hordeum vulgare 22 Domesticated barley 21 17 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 17 12 Yes Neospora caninum Nc-Liverpool 6.2 4 4 Yes Plasmodium falciparum HB3 2 2 Yes Plasmodium falciparum Dd2 2 2 No Chamaesiphon minutus PCC 6605 1 1 No Cyanobium gracile PCC 6307 1 1 No Crinalium epipsammum PCC 9333 1 1 No Cyanothece sp. PCC 7822 1 1 No Cyanothece sp. ATCC 51142 1 1 No Frankia sp. CcI3 1 1 No Nocardiopsis alba ATCC BAA-2165 1 1 No Streptomyces albus J1074 7 7 No Streptomyces rapamycinicus NRRL 5491 9 9 No Streptomyces davawensis JCM 4913 39 39 No Streptomyces fulvissimus DSM 40593 15 15 No Streptomyces venezuelae ATCC 10712 17 15 No Streptomyces collinus Tu 365 15 14 No Streptomyces cattleya NRRL 8057 = DSM 46488 12 11 No Streptomyces hygroscopicus subsp. jinggangensis TL01 23 22 No Saccharothrix espanaensis DSM 44229 23 22 No Amycolatopsis mediterranei RB 54 53 No Amycolatopsis mediterranei S699 55 54 No Amycolatopsis mediterranei S699 55 54 No Amycolatopsis orientalis HCCB10007 12 10 No Actinoplanes friuliensis DSM 7358 52 50 No Nocardia brasiliensis ATCC 700358 2 2 No Mycobacterium liflandii 128FXT 1 1 No Mycobacterium canettii CIPT 140070017 1 1 No Mycobacterium canettii CIPT 140060008 1 1 No Mycobacterium canettii CIPT 140070008 1 1 No Mycobacterium canettii CIPT 140070010 1 1 No Mycobacterium tuberculosis EAI5/NITR206 1 1 No Mycobacterium tuberculosis EAI5 1 1 No Mycobacterium tuberculosis CAS/NITR204 1 1 No Mycobacterium tuberculosis str. Beijing/NITR203 1 1 No Mycobacterium tuberculosis UT205 1 1 No Mycobacterium tuberculosis RGTB423 1 1 No Mycobacterium tuberculosis RGTB327 1 1 No Mycobacterium tuberculosis CTRI-2 1 1 No Mycobacterium tuberculosis str. Erdman = ATCC 35801 1 1 No Mycobacterium tuberculosis KZN 605 1 1 No Mycobacterium tuberculosis KZN 4207 1 1 No Mycobacterium tuberculosis CCDC5180 1 1 No Mycobacterium tuberculosis CCDC5079 1 1 No Mycobacterium tuberculosis CCDC5079 1 1 No Mycobacterium tuberculosis H37Ra 1 1 No Mycobacterium tuberculosis str. Haarlem/NITR202 1 1 No Mycobacterium tuberculosis str. Haarlem 1 1 No Mycobacterium tuberculosis F11 1 1 No Mycobacterium tuberculosis H37Rv 1 1 No Mycobacterium tuberculosis CDC1551 1 1 No Mycobacterium bovis AF2122/97 1 1 No Mycobacterium bovis BCG str. Korea 1168P 1 1 No Mycobacterium bovis BCG str. Mexico 1 1 No Mycobacterium bovis BCG str. Tokyo 172 1 1 No Mycobacterium kansasii ATCC 12478 1 1 No Leifsonia xyli subsp. cynodontis DSM 46306 3 1 No Bifidobacterium longum NCC2705 1 1 No Bifidobacterium longum DJO10A 1 1 No Bifidobacterium longum subsp. infantis 157F 1 1 No Bifidobacterium longum subsp. longum KACC 91563 1 1 No Bifidobacterium longum subsp. longum BBMN68 1 1 No Bifidobacterium longum subsp. longum JCM 1217 1 1 No Bifidobacterium bifidum PRL2010 4 2 No Bifidobacterium bifidum BGN4 4 2 No Actinomyces graevenitzii C83 1 1 No Actinomyces odontolyticus ATCC 17982 1 1 No Eubacterium siraeum V10Sc8a 1 1 No Clostridium thermocellum DSM 1313 2 2 No Faecalibacterium prausnitzii L2-6 2 2 No Ruminococcus champanellensis 18P13 9 6 No Desulfitobacterium hafniense DCB-2 1 1 No Clostridium saccharolyticum Clostridium cf. saccharolyticum K10 1 1 No Coprococcus catus GD/7 4 2 No Clostridium saccharobutylicum DSM 13864 3 3 No Clostridium botulinum H04402 065 3 2 No Clostridium botulinum BKT015925 3 2 No Clostridium botulinum B1 str. Okra 3 2 No Clostridium botulinum Ba4 str. 657 3 2 No Clostridium botulinum A str. Hall 3 2 No Clostridium botulinum A str. ATCC 19397 3 2 No Clostridium acetobutylicum DSM 1731 7 6 No Clostridium acetobutylicum EA 2018 7 6 No Enterococcus mundtii QU 25 5 5 No Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 2 2 No Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 2 2 No Streptococcus mutans LJ23 2 1 No Thermobacillus composti KWC4 1 1 No Paenibacillus sp. Y412MC10 3 3 No Paenibacillus mucilaginosus KNP414 6 6 No Paenibacillus mucilaginosus K02 6 6 No Paenibacillus larvae subsp. larvae DSM 25430 1 1 No Paenibacillus polymyxa CR1 2 2 No Paenibacillus polymyxa SC2 3 3 No Paenibacillus polymyxa E681 1 1 No Bacillus licheniformis 9945A 1 1 No Bacillus licheniformis DSM 13 = ATCC 14580 1 1 No Bacillus thuringiensis HD-789 3 2 No Bacillus thuringiensis MC28 10 9 No Bacillus cereus Q1 1 1 No Prevotella dentalis DSM 3688 1 1 No Fibrobacter succinogenes subsp. succinogenes S85 5 5 No Campylobacter jejuni Waterborne C.jejuni Outbreak 2 2 No Campylobacter jejuni RM1221 2 2 No Campylobacter jejuni subsp. jejuni 00-2544 2 2 No Campylobacter jejuni subsp. jejuni 00-2538 2 2 No Campylobacter jejuni subsp. jejuni 00-2426 2 2 No Campylobacter jejuni subsp. jejuni 00-2425 2 2 No Campylobacter jejuni subsp. jejuni PT14 2 2 No Campylobacter jejuni subsp. jejuni ICDCCJ07001 2 2 No Campylobacter jejuni subsp. jejuni S3 2 2 No Campylobacter jejuni subsp. jejuni M1 2 2 No Campylobacter jejuni subsp. jejuni IA3902 2 2 No Campylobacter jejuni subsp. jejuni 81116 2 2 No Campylobacter jejuni subsp. jejuni 81-176 2 2 No Campylobacter jejuni subsp. jejuni NCTC 11168-BN148 2 2 No Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 2 2 No Campylobacter coli 76339 2 2 No Campylobacter coli 15-537360 1 1 No Campylobacter coli CVM N29710 2 2 No Sorangium cellulosum So0157-2 14 13 No Myxococcus stipitatus DSM 14675 5 5 No Burkholderia phenoliruptrix BR3459a 1 1 No Burkholderia sp. YI23 2 2 No Burkholderia sp. CCGE1003 1 1 No Burkholderia sp. CCGE1001 1 1 No Burkholderia sp. KJ006 1 1 No Burkholderia pseudomallei MSHR305 4 2 No Burkholderia pseudomallei NCTC 13179 4 2 No Burkholderia pseudomallei BPC006 4 2 No Burkholderia pseudomallei 1026b 4 2 No Burkholderia pseudomallei MSHR346 3 2 No Burkholderia pseudomallei 668 4 2 No Burkholderia pseudomallei 1710b 4 2 No Burkholderia pseudomallei K96243 4 2 No Burkholderia mallei NCTC 10229 4 2 No Burkholderia mallei NCTC 10247 4 2 No Burkholderia mallei ATCC 23344 4 2 No Burkholderia ambifaria MC40-6 1 1 No Variovorax paradoxus B4 1 1 No Variovorax paradoxus EPS 3 3 No Rhizobium etli CFN 42 1 1 No Rhodopseudomonas palustris HaA2 1 1 No Bradyrhizobium oligotrophicum S58 3 3 No Simiduia agarivorans SA1 = DSM 21679 3 3 No Aggregatibacter actinomycetemcomitans ANH9381 2 2 No Aggregatibacter actinomycetemcomitans D11S-1 2 2 No Haemophilus parasuis ZJ0906 4 4 No Actinobacillus suis H91-0380 1 1 No Actinobacillus pleuropneumoniae serovar 3 str. JL03 1 1 No Actinobacillus pleuropneumoniae serovar 7 str. AP76 1 1 No Aeromonas hydrophila ML09-119 2 2 No Vibrio sp. EJY3 1 1 No Vibrio anguillarum Listonella anguillarum M3 1 1 No Vibrio nigripulchritudo VibrioScope 1 1 No Vibrio vulnificus CMCP6 1 1 No Vibrio vulnificus YJ016 1 1 No Vibrio cholerae LMA3984-4 1 1 No Vibrio cholerae M66-2 1 1 No Vibrio cholerae O395 1 1 No Vibrio cholerae IEC224 1 1 No Vibrio cholerae O1 str. 2010EL-1786 1 1 No Vibrio cholerae MJ-1236 1 1 No Vibrio cholerae O1 biovar El Tor str. N16961 1 1 No Shewanella sp. W3-18-1 2 1 No Shewanella sp. ANA-3 2 1 No Shewanella baltica OS678 1 1 No Shewanella baltica OS223 2 1 No Shewanella baltica OS195 1 1 No Shewanella sp. MR-7 2 1 No Shewanella putrefaciens 200 2 1 No Alteromonas macleodii str. 'Ionian Sea U4' 1 1 No Stenotrophomonas maltophilia JV3 2 1 No Yersinia enterocolitica subsp. palearctica 105.5R(r) 2 2 No Pectobacterium carotovorum subsp. carotovorum PCC21 1 1 No Salmonella bongori N268-08 1 1 No Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 3 3 No Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 1 1 No Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 1 1 No Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 1 1 No Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 1 1 No Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 1 1 No Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 1 1 No Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 1 1 No Salmonella enterica subsp. enterica serovar Newport str. SL254 1 1 No Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. U288 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 1 1 No Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1 1 No Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. Ty21a 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. CT18 1 1 No Salmonella enterica subsp. enterica serovar Typhi str. Ty2 1 1 No Salmonella enterica serovar Bovismorbificans genomics 1 1 No Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 1 1 No Salmonella enterica subsp. enterica serovar Agona str. 24249 1 1 No Salmonella enterica subsp. enterica serovar Agona str. SL483 1 1 No Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 1 1 No Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 1 1 No Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 1 1 No Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 1 1 No Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. B182 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 1 1 No Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 1 1 No Salmonella enterica subsp. enterica serovar Pullorum str. S06004 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 1 1 No Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 1 1 No Escherichia coli IHE3034 2 2 No Escherichia coli APEC O1 2 2 No Pseudomonas syringae pv. syringae B728a 2 1 No Pseudomonas putida BIRD-1 1 1 No Pseudomonas putida ND6 1 1 No Pseudomonas fluorescens F113 1 1 No Pseudomonas aeruginosa RP73 1 1 No Pseudomonas aeruginosa M18 1 1 No Acinetobacter junii SH205 1 1 No Acinetobacter johnsonii SH046 1 1 No Methanolobus psychrophilus R15 1 1 No Halorhabdus tiamatea SARL4B 1 1 Yes Homo sapiens 75_37 (old version GRC) Human 81 80 Yes Homo sapiens Human 38 38 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 27 26 Yes Loa loa v3.3 (Request) Eye worm 12 12 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 9 9 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 9 9 Yes Moniliophthora perniciosa FA553 4 4 Yes Encephalitozoon intestinalis 2 2 Yes Encephalitozoon cuniculi (endoparasite) 4 4 Yes Picea sitchensis Sitka spruce 10 8 Yes Lotus japonicus 3 3 Yes Malus x domestica (Duplicate) Apple 13 10 Yes Ricinus communis Castor bean 35 23 Yes Nicotiana benthamiana 0.4.4 (Early draft) 9 9 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3 Yes Phoenix dactylifera Date palm 3 3 No Mycobacterium tuberculosis H37Rv (Duplicate of ex) 1 1 No Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 1 1 Yes Homo sapiens 69_37 Human 33 33 Yes Pan troglodytes 69_2.1.4 Chimpanzee 25 25 Yes Gorilla gorilla 69_3.1 Western gorilla 27 27 Yes Pongo abelii 69_2 Sumatran orangutan 25 25 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 26 26 Yes Macaca mulatta 69_1 Rhesus monkey 26 26 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 25 25 Yes Otolemur garnettii 69_3 Small-eared galago 26 26 Yes Microcebus murinus 69_1 Gray mouse lemur 25 25 Yes Rattus norvegicus 69_3.4 Norway rat 26 26 Yes Mus musculus 69_38 House mouse 30 29 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 22 22 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 24 24 Yes Cavia porcellus 69_3 Domestic guinea pig 23 23 Yes Oryctolagus cuniculus 69_2 Rabbit 28 28 Yes Ochotona princeps 69 American pika 22 22 Yes Tupaia belangeri 69 Northern tree shrew 20 20 Yes Sus scrofa 69_10.2 Pig 26 26 Yes Bos taurus 69_3.1 Cattle 27 27 Yes Vicugna pacos 69_1 Alpaca 17 17 Yes Tursiops truncatus 69_1 Bottlenose dolphin 25 25 Yes Mustela putorius furo 69_1.0 Domestic ferret 28 27 Yes Ailuropoda melanoleuca 69_1 Giant panda 27 27 Yes Canis familiaris 69_3.1 Dog 27 27 Yes Felis catus 69 Domestic cat 22 21 Yes Equus caballus 69_2 Horse 28 28 Yes Myotis lucifugus 69_2.0 Little brown bat 27 27 Yes Pteropus vampyrus 69_1 Large flying fox 26 26 Yes Sorex araneus 69_1 European shrew 16 15 Yes Erinaceus europaeus 69 Western European hedgehog 20 19 Yes Procavia capensis 69_1 Cape rock hyrax 20 20 Yes Loxodonta africana 69_3 African savanna elephant 25 25 Yes Echinops telfairi 69 Small Madagascar hedgehog 25 25 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 21 20 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 21 19 Yes Macropus eugenii 69_1.0 Tammar wallaby 23 23 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 24 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 27 27 Yes Ornithorhynchus anatinus 69_5 Platypus 24 24 Yes Petromyzon marinus 69_7.0 Sea lamprey 15 15 Yes Meleagris gallopavo 69_2 Turkey 23 23 Yes Gallus gallus 69_2 Chicken 27 27 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 25 25 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 31 31 Yes Anolis carolinensis 69_2.0 Green anole 26 26 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 24 24 Yes Latimeria chalumnae 69_1 Coelacanth 25 25 Yes Gadus morhua 69_1 Atlantic cod 31 31 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 28 28 Yes Takifugu rubripes 69_4 Torafugu 27 27 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 29 29 Yes Oryzias latipes 69_1 Japanese medaka 26 26 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 29 29 Yes Oreochromis niloticus 69_1.0 Nile tilapia 34 34 Yes Danio rerio 69_9 Zebrafish 31 31 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 10 10 Yes Ciona intestinalis 69 Vase tunicate 17 14 Yes Drosophila melanogaster 69_5 Fruit fly 15 15 Yes Caenorhabditis elegans 69_215 Roundworm 9 9 Yes Arabidopsis thaliana 10 Thale cress 3 3 No 1_Upper_euphotic (meta-genome) 1 1 No 6_Upper_euphotic (meta-genome) 1 1 No Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 1 1 No Air microbial communities Singapore indoor air filters 2 (meta-genome) 1 1 No Combined (meta-genome) 5 5 No Cyphomyrmex longiscapus fungus garden (meta-genome) 6 6 No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 No Dump bottom (Dump bottom) (meta-genome) 10 10 No Dump top (Dump top) (meta-genome) 6 6 No Endophytic microbiome from Rice (meta-genome) 2 2 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 3 2 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 3 3 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 1 1 No Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 1 1 No Fungus garden combined (combined) (meta-genome) 4 4 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 1 1 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 3 3 No Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 1 1 No Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 1 1 No Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 1 1 No Human Gut Community Subject 7 (meta-genome) 1 1 No Human Gut Community Subject 8 (meta-genome) 10 6 No Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 8 7 No Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 8 8 No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 9 9 No Marine anammox bioreactor enriched for Scalindua species (meta-genome) 1 1 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 3 3 No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 1 1 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 2 2 No Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 15 15 No Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 6 6 No Mouse Gut Community ob1 (meta-genome) 1 1 No NCBI 2017_08 genome 71684 66402 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 6 6 No Protozoadb 2010_08 (Protozoadb) 130 130 No simHC - Simulated High Complexity Metagenome (meta-genome) 6 6 No simLC - Simulated Low Complexity Metagenome (meta-genome) 4 4 No Sludge/Australian, Phrap Assembly (meta-genome) 3 3 No Soil microbial communities from Minnesota Farm (meta-genome) 13 13 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 26 26 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 68 68 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 46 46 No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 37 37 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 12 12 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 28 27 No STRING v9.0.5 (STRING) 1919 1771 No Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 1 1 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 10 10 No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 7 7 No Termite Protist Endosymbiont Community (meta-genome) 2 2 No Uniprot 2018_03 genome 36655 33002 No Global Ocean Sampling Expedition (GOS) 201 193 No NCBI plasmid sequences (Plasmids) 116 103 No NCBI viral sequences (Viral) 16 12 No PDB chains (SCOP 1.75 ) (PDB) 49 31 No Protein Data Bank (all PDB sequenc) 561 441 No SCOP2 SCOPe CATH ECOD (all domain sequ) 1220 1220 No TargetDB 60 57 No The Salmonella enterica Pan-genome (meta-genome) 33 33 No UniProt 11 8
