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Ricin B-like family domain assignments
in
PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 46 significant domains in 28 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1abrB   1.92e-39   0.00000441   11-139   1abr B:1-140  
  1.05e-37   0.00000836   143-264   1abr B:141-267  
1ce7B   5.71e-35   0.00000748   3-129   1m2t B:249-384  
  1.47e-30   0.00000932   136-253   1ce7 B:134-255  
1ggpB   1.08e-27   0.0000103   4-125   1ggp B:11-140  
  7.04e-27   0.00000312   128-252   1ggp B:141-267  
1knmA   8.25e-63   0.00000305   14-128   1knm A:  
1m2tB   3.66e-36   0.00000354   3-133   1m2t B:249-384  
  3.71e-32   0.0000108   140-261   1m2t B:385-510  
1onkB   8.8e-36   0.00000544   4-133   1m2t B:249-384  
  2.33e-34   0.0000147   140-261   1onk B:138-263  
1oqlB   7.59e-37   0.00000423   4-134   1oql B:1-137  
  1.87e-33   0.0000117   141-261   1oql B:138-263  
1puuB   1.73e-35   0.00000455   4-133   1m2t B:249-384  
  7.45e-33   0.0000137   140-261   1puu B:385-507  
1qxmA   1.01e-30   0.0000016   163-298   1qxm A:149-286  
  8.45e-28   0.00000305   19-156   1qxm A:4-148  
1rzoB   3.71e-42   0.00000693   3-134   1rzo B:2001-2135  
  2.49e-35   0.0000104   137-259   1rzo B:2136-2262  
1sr4A   2.27e-47   0.0000000509   49-205   1sr4 A:  
1sr4C   1.1e-44   0.0000000474   7-157   1sr4 C:  
1sz6B   1.69e-35   0.00000455   4-133   1m2t B:249-384  
  1.21e-32   0.0000152   141-261   1puu B:385-507  
1v6wA   3.63e-65   0.00000324   320-434   1v6w A:304-436  
1vclA   1.63e-32   0.000000128   2-147   1vcl A:1-150  
  7.41e-32   0.000000363   153-282   1vcl A:151-283  
1xhbA   7.14e-41   0.000000401   338-466   1xhb A:423-553  
1yf8B   6.83e-35   0.00000596   3-129   1m2t B:249-384  
  1.1e-31   0.0000133   137-254   1tfm B:134-255  
2aaiB   2.26e-42   0.00000759   3-134   2aai B:1-135  
  1.73e-35   0.0000112   138-259   2aai B:136-262  
2ehmA   8.8e-31   0.0000016   151-286   1qxm A:149-286  
  7.45e-28   0.00000305   7-144   1qxm A:4-148  
2f2fA   2.21e-47   0.0000001   68-221   1sr4 A:  
2f2fC   1.69e-43   0.0000000347   26-178   2f2f C:25-178  
2ihoA   3.95e-35   0.000000327   5-153   2iho A:2-155  
2q3nB   8.52e-41   0.00000557   9-139   2q3n B:7-140  
  4.04e-34   0.00000572   143-264   2q3n B:141-267  
2rg9B   1.87e-35   0.00000455   4-133   1m2t B:249-384  
  1.76e-32   0.000021   141-261   1puu B:385-507  
2zqnA   1.48e-27   0.000000347   3-129   2zqn A:131-260  
2zqoA   1.48e-27   0.000000347   2-128   2zqn A:131-260  
3d7wB   5.73e-36   0.00000375   4-133   1m2t B:249-384  
  3.64e-32   0.0000105   140-261   1m2t B:385-510  
 
Weak hits:
1hwmB   9.13e-40   0.00085   5-133   1hwm B:3-135  
  1.15e-36   0.00066   136-262   1hwm B:136-266  

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View all assignments containing a Ricin B-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   9428 9428
No Yes Homo sapiens 76_38 Human 5 5
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 4 4
No Yes Otolemur garnettii 76_3 Small-eared galago 3 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 7 7
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 3 3
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 3 3
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 3 3
No Yes Myotis lucifugus 76_2.0 Little brown bat 4 4
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 2 2
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   2 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 76_2 Turkey 2 2
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 3 3
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 2 2
No Yes Xenopus laevis African clawed frog 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 4 4
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 76_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Oryzias latipes 76_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danio rerio 76_9 Zebrafish 4 4
No Yes Oikopleura dioica   1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Octopus bimaculoides 280   6 6
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 6 6
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Tetranychus urticae Two-spotted spider mite 2 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Acropora digitifera v1.0   4 2
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Schizophyllum commune   1 1
No Yes Fomitopsis pinicolav1.0   3 3
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   3 3
No Yes Dichomitus squalens   1 1
No Yes Gossypium raimondii v221   4 2
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Malus domestica v196 Apple 4 2
No Yes Populus trichocarpa v156 Black cottonwood 3 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 1
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 2 2
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Catenulispora acidiphila DSM 44928   22 22
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces coelicolor A3(2)   3 3
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces bingchenggensis BCW-1   5 4
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   3 3
No Yes Streptomyces scabiei 87.22   7 7
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   6 6
No Yes Actinosynnema mirum DSM 43827   3 3
No Yes Amycolatopsis mediterranei U32   23 23
No Yes Kribbella flavida DSM 17836   1 1
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   1 1
No Yes Verrucosispora maris AB-18-032   7 7
No Yes Micromonospora sp. L5   4 4
No Yes Micromonospora aurantiaca ATCC 27029   3 3
No Yes Actinoplanes sp. N902-109   7 7
No Yes Actinoplanes sp. SE50/110   9 9
No Yes Actinoplanes missouriensis 431   3 3
No Yes Microbacterium testaceum StLB037   2 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   2 2
No Yes Haemophilus parasuis SH0165   2 2
No Yes Haemophilus ducreyi 35000HP   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Streptomyces rapamycinicus NRRL 5491   3 3
No Yes Streptomyces davawensis JCM 4913   4 4
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   6 6
No Yes Amycolatopsis mediterranei RB   23 23
No Yes Amycolatopsis mediterranei S699   23 23
No Yes Amycolatopsis mediterranei S699   23 23
No Yes Actinoplanes friuliensis DSM 7358   10 10
No Yes Clostridium botulinum BKT015925   2 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 2
No Yes Aggregatibacter actinomycetemcomitans D11S-1   2 2
No Yes Haemophilus parasuis ZJ0906   2 2
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 6 6
No Yes Homo sapiens (NCBI version) Human 2 2
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Malus x domestica (Duplicate) Apple 4 2
No Yes Ricinus communis (Early assembly) Castor bean 24 14
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 2
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 2 2
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 2 2
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 69_2 Turkey 2 2
No Yes Gallus gallus 69_2 Chicken 2 2
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 2 2
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 2 2
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 2
No Yes Danio rerio 69_9 Zebrafish 2 2
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   4803 4727
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   109 109
No Yes Uniprot 2018_03 genome   2696 2522
No Yes NCBI plasmid sequences (Plasmids)   7 6
No Yes NCBI viral sequences (Viral)   3 2
No Yes PDB chains (SCOP 1.75) (PDB)   46 28
No Yes Protein Data Bank (all PDB sequenc)   185 128
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   685 685
No Yes UniProt viral sequences (Viral)   6 3

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